Commit graph

2854 commits

Author SHA1 Message Date
James Hensman
f9a16059e4 weaved some slow functions in the stationary class. We now fall back (and latch) to numpy if weave fails 2014-10-16 01:28:41 +01:00
James Hensman
5962035b54 Merge branch 'devel' of github.com:sheffieldml/GPy into devel 2014-10-12 16:00:56 +01:00
Alan Saul
7916c5f9ea Stopped rounding to int in priors printing 2014-10-10 17:19:37 +01:00
Max Zwiessele
829e40b25c [missing_data in sparse gp] can be extended towards missing_data handling in gp itself. Setting up gpy issue 2014-10-09 10:34:01 +01:00
Max Zwiessele
de801c9d29 [datasets] updated deng loading pandas bugs... 2014-10-09 10:32:32 +01:00
Max Zwiessele
d954829a40 [pca] missing data is now handled as mean 2014-10-09 08:40:15 +01:00
Max Zwiessele
a63278c234 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2014-10-08 12:03:54 +01:00
Max Zwiessele
fa7807ee6f [missing data] general implementation for subsetting data 2014-10-08 12:03:51 +01:00
James Hensman
fd4404a11a minor bugfix on windows (thanks NC) 2014-10-07 16:20:16 +01:00
James Hensman
3e07b207a9 whitespace 2014-10-06 11:49:02 +01:00
Max Zwiessele
d93fac8c13 [datasets] deng et al. single cell experiment prints for ipython notebook 2014-10-06 11:00:57 +01:00
Max Zwiessele
919be3ceba [vardtc missing data] updated to new psi2 stuff 2014-10-06 11:00:34 +01:00
Max Zwiessele
6a260409fa [param_to_array] deprecated and removed param_to_array from code, use param.values instead 2014-10-06 08:59:24 +01:00
Ricardo
c1d998e272 Another bug fixed 2014-10-03 12:02:58 +01:00
Ricardo
45f8751769 Bug fixed 2014-10-03 11:55:58 +01:00
Ricardo
94b19242f0 HalfT prior is working 2014-10-03 11:37:09 +01:00
Ricardo
657c78ba34 Half_t prior (Martin's contribution) 2014-10-03 10:07:58 +01:00
James Hensman
f4718edfb8 edited coregionalize implementation 2014-09-30 16:44:55 +01:00
James Hensman
9081c8ee96 optionally unweaved the coregionalize kernel
coregionalize shoudl now work without weave. Added kernel tests also.
2014-09-29 10:22:50 +01:00
Zhenwen Dai
afbb8ab253 bug fix for extending prod kernel 2014-09-24 15:08:02 +01:00
Zhenwen Dai
10bfb47aa6 add set_X and set_Y interface to gp model 2014-09-24 14:36:25 +01:00
Zhenwen Dai
88dc6f25a2 Merge branch 'devel' for extending prod kernel 2014-09-24 13:45:49 +01:00
Zhenwen Dai
6823a1df2e extend prod kernel for handling more than 2 kernels 2014-09-24 13:45:39 +01:00
James Hensman
8154398b2e added notimplemented error to svigp 2014-09-24 10:07:20 +01:00
James Hensman
0d6a9fb460 tidying soem comments 2014-09-23 10:55:06 +01:00
James Hensman
f9b6e0991c symmetrify now falls back gracefully to numpy if weave fails 2014-09-23 10:24:29 +01:00
James Hensman
be8fa21cbc now ising numpy for std_norm_cdf 2014-09-23 08:54:50 +01:00
James Hensman
3134f52d7d removed fast_array_equal (no longer used) 2014-09-23 08:46:35 +01:00
James Hensman
1765e017dd removed more more more imports 2014-09-22 22:09:25 +01:00
James Hensman
4a3db2bef7 removed more more imports 2014-09-22 22:07:35 +01:00
James Hensman
422cca27d5 removed more imports 2014-09-22 22:06:33 +01:00
James Hensman
5cb159f8d4 removed unnecessary imports in likelihoods when hunting down weave depencencies 2014-09-22 22:05:28 +01:00
Zhenwen Dai
dd987d9428 change BGPLVM to use sparsegp_mpi 2014-09-22 18:12:19 +01:00
Max Zwiessele
ac4dbb851d [#133] fix: chainging constraint in __init__ 2014-09-22 13:57:27 +01:00
Max Zwiessele
bccd8e094a [updates] merged update structure 2014-09-22 09:29:48 +01:00
Max Zwiessele
ef05f49b8b [updates] updated update structure immensely 2014-09-22 09:26:01 +01:00
James Hensman
48fb604891 some improvements to plotting 2d kernels 2014-09-17 12:30:56 +01:00
James Hensman
31478d4d59 improved docsting for optimize 2014-09-17 11:22:31 +01:00
James Hensman
803c345d44 docstring for ExpQuad (thanks Mike O. ) 2014-09-17 11:12:38 +01:00
James Hensman
ff63617286 for loop speedup in grdients X 2014-09-16 13:20:38 +01:00
James Hensman
ed754823be NonContiguos tests fixed for Kdiag_dX 2014-09-15 09:55:02 +01:00
Zhenwen Dai
33fcd06ccc change setup.py accordingly. 2014-09-12 11:53:59 +01:00
Zhenwen Dai
049b58c729 Remove the dependency on matplotlib 2014-09-12 11:51:51 +01:00
Zhenwen Dai
d7eee6aa00 finish the debug of sparsegp_mpi 2014-09-12 10:36:01 +01:00
Zhenwen Dai
31f11eda40 bug fix: param object randomize 2014-09-11 17:29:47 +01:00
Zhenwen Dai
6c043ed829 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2014-09-11 16:45:05 +01:00
Zhenwen Dai
e11e294791 changes installtion instructions 2014-09-11 16:44:01 +01:00
Ricardo
31ace537a5 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2014-09-11 16:18:34 +01:00
Ricardo
badacfb585 bug fixed in normalization 2014-09-11 16:18:13 +01:00
Zhenwen Dai
97d7fa6955 add the Windows installation instructions for GPy 2014-09-11 14:29:50 +01:00