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apunkt/GPy

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2bb0323b0c

Merge 419be7bfd1 into 38bffb154c Neil Lawrence 2025-08-15 18:51:35 +00:00
419be7bfd1 Fix and improve LFM kernel implementation Neil Lawrence 2025-08-15 20:50:50 +02:00
bcaa5676cd Discover LFM kernels already exist as EQ_ODE1 and EQ_ODE2 - update docstrings and remove redundant implementation Neil Lawrence 2025-08-15 14:51:49 +02:00
74c39c8a54 Add initial LFM1 kernel implementation with basic structure and parameter handling Neil Lawrence 2025-08-15 13:21:28 +02:00
5ae4101693 Remove MATLAB comparison script - will be built as external validation tool Neil Lawrence 2025-08-15 12:14:27 +02:00
ca1d4bffe9 Add MATLAB comparison framework for LFM kernel validation Neil Lawrence 2025-08-15 12:12:21 +02:00
7227ad8a17 Complete test-driven design phase for LFM kernel - Add comprehensive test suite and update backlog status Neil Lawrence 2025-08-15 11:50:10 +02:00
c8e98f99ee Update LFM kernel backlog items - complete code review, start design phase Neil Lawrence 2025-08-15 11:38:59 +02:00
de37894a56 Add CIP-0002: Parameter Tying Framework for GPy - Community Discussion Neil Lawrence 2025-08-15 11:29:16 +02:00
df1164d638 Update parameter tying investigation with paramz dependency analysis Neil Lawrence 2025-08-15 11:24:42 +02:00
f058078017 Update parameter tying investigation with GitHub issue findings Neil Lawrence 2025-08-15 11:16:43 +02:00
e659649851 Add backlog item for parameter tying investigation and CIP creation Neil Lawrence 2025-08-15 11:14:35 +02:00
883309a35f Update LFM kernel code review: Initial analysis of GPy and MATLAB implementations Neil Lawrence 2025-08-15 11:06:34 +02:00
9f44a3df11 Fix backlog item YAML frontmatter format Neil Lawrence 2025-08-15 08:27:09 +02:00
26ca1a6930 Integrate backlog items into CIP-0001 Neil Lawrence 2025-08-15 08:25:35 +02:00
06a103d61d Add LFM kernel implementation backlog items Neil Lawrence 2025-08-15 08:24:01 +02:00
90805ba026 Update CIP-0001: Modernize LFM kernel implementation Neil Lawrence 2025-08-15 08:22:38 +02:00
d06e3d1cb7 Add GPy community-driven development tenet Neil Lawrence 2025-08-15 07:58:12 +02:00
112f00077d Add VibeSafe project management framework Neil Lawrence 2025-08-15 07:40:27 +02:00
f7a8c674e2

Merge ee0abed568 into 38bffb154c dependabot[bot] 2025-07-31 20:38:00 +00:00
3fac273f7e

Merge db439d7bad into 38bffb154c mirjanic 2025-07-31 20:37:50 +00:00
ec37c70b5f

Merge cc9d22cea2 into 38bffb154c Liz Decolvenaere 2025-07-31 20:37:50 +00:00
26566be856

Merge 46359d6b51 into 38bffb154c Peter Scherpelz 2025-07-31 20:37:47 +00:00
8942dc8656

Merge 7bfb65b5c5 into 38bffb154c Robert (Bob) Turner 2025-07-31 20:37:45 +00:00
dbc03580d7

Merge 6feda6f73b into 38bffb154c Atharva Jadhao 2025-07-31 20:37:45 +00:00
c4f2af0a73

Merge 3f090751b3 into 38bffb154c Kevin M Jablonka 2025-07-31 20:37:42 +00:00
caccf5bc22

Merge 752bbf3996 into 38bffb154c Timo 2025-07-11 22:13:56 -04:00
f653711a4b

Merge ce2b15481b into 38bffb154c gehbiszumeis 2025-07-05 15:05:48 +01:00
a4bb42557e

Merge 4db53c6e25 into 38bffb154c Martin Bubel 2025-07-05 15:02:34 +01:00
fecd9eb0a7

Merge 5def1c7110 into 38bffb154c Martin Bubel 2025-06-19 12:18:54 +02:00
5def1c7110

Merge branch 'devel' into maintenance-support-numpy2 maintenance-support-numpy2 Martin Bubel 2025-06-19 12:18:51 +02:00
38bffb154c Fix lint issues related to comparisons with None devel Yuri Victorovich 2025-06-11 20:15:05 -07:00
26a7f21655

Merge pull request #1116 from SheffieldML/limit-pytest-version Martin Bubel 2025-06-19 11:41:27 +02:00
156f5b738f

Update .github/workflows/test-and-deploy.yml limit-pytest-version Martin Bubel 2025-06-19 11:32:30 +02:00
6ff1e68699

Update .github/workflows/test-and-deploy.yml Martin Bubel 2025-06-19 11:32:18 +02:00
bb4c5ab7e2

Update .github/workflows/test-and-deploy.yml Martin Bubel 2025-06-19 11:32:11 +02:00
7d269c772d limit upper pytest version in workflows Martin Bubel 2025-06-17 09:50:51 +02:00
619b1dfa47 Fix lint issues related to comparisons with None Yuri Victorovich 2025-06-11 20:15:05 -07:00
7715853597 limit upper pytest version in github actions Martin Bubel 2025-06-11 23:20:12 +02:00
eb0a3897b2 setting upper limit on scipy again Martin Bubel 2025-06-10 18:50:51 +02:00
8791afdd3d update cython files Martin Bubel 2025-06-10 18:32:03 +02:00
c1dea43786 support numpy 2.0 Martin Bubel 2025-06-10 18:31:21 +02:00
0059ad0a3c

Merge babf9b06ff into acdd03d3ed Martin Bubel 2025-01-25 16:18:04 +00:00
acdd03d3ed

Merge pull request #1108 from olamarre/bugfix/ep-pickling Martin Bubel 2025-01-15 19:22:47 +01:00
b6efa8e548 update changelog Martin Bubel 2025-01-15 19:17:45 +01:00
ad9c507cde fix: pickle and deep copy classification models with EP Olivier Lamarre 2025-01-03 23:33:00 -05:00
9a31886085

Merge pull request #1104 from SheffieldML/1098-cant-instantiate-halft-prior Martin Bubel 2024-10-28 23:32:56 +01:00
d7da7c617f remove dev-test-script 1098-cant-instantiate-halft-prior Martin Bubel 2024-10-28 23:28:18 +01:00
5a9e5e3cc4 update prior tests Martin Bubel 2024-10-28 23:28:10 +01:00
200798eb48 draft: update prior __new__ functions Martin Bubel 2024-10-28 23:06:31 +01:00
4db53c6e25 add ruff pre-commit 1102-add-ruff-linter-and-formatter Martin Bubel 2024-10-27 13:57:41 +01:00
1fcb40845d

Merge pull request #1101 from janmayer/fix_invalid_escape_sequence Martin Bubel 2024-10-27 13:51:56 +01:00
c04c9b328d update changelog Martin Bubel 2024-10-27 13:51:41 +01:00
12d4c22ca7 Escape more strings Jan Mayer 2024-10-26 09:36:11 +02:00
4fa858ee6d Fix invalid escape sequence Jan Mayer 2024-10-21 20:15:11 +02:00
ee0abed568

Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows dependabot/github_actions/dot-github/workflows/actions/download-artifact-4.1.7 dependabot[bot] 2024-09-03 22:53:34 +00:00
babf9b06ff remove forgotten setup.py install in workflow switch-to-poetry Martin Bubel 2024-07-28 18:21:33 +02:00
de85ce54f2 fix identation in workflow Martin Bubel 2024-07-28 18:12:36 +02:00
70b00abe19

Merge branch 'devel' into switch-to-poetry Martin Bubel 2024-07-28 18:08:49 +02:00
028f0880ff put upper limit on numpy due to paramz incompatibility Martin Bubel 2024-07-28 18:05:39 +02:00
c8a9b5f0ba

Merge pull request #1093 from SheffieldML/devel deploy Martin Bubel 2024-07-23 08:19:10 +02:00
aa49220fd1 github actions: clenaup build-and-deploy jobs v1.13.2 Martin Bubel 2024-07-23 08:11:42 +02:00
0833966c16 github actions: fix identation Martin Bubel 2024-07-22 23:53:05 +02:00
aabeec2a74 github actions: try to not use direct path Martin Bubel 2024-07-22 23:52:00 +02:00
ade8b351de github-actions: remove deletion of dists folder Martin Bubel 2024-07-22 23:46:40 +02:00
e20644c963 bump upload-artifact Martin Bubel 2024-07-22 23:40:06 +02:00
0e4ecc3363 try build-linux with even older actions Martin Bubel 2024-07-22 23:34:36 +02:00
d3b2c9f351 try older version of manylinux Martin Bubel 2024-07-22 23:29:27 +02:00
fdb208f194 try docker workaround actions-manylinux-workaround Martin Bubel 2024-07-22 23:15:13 +02:00
121c3c7ee5 build-linux rollback Martin Bubel 2024-07-22 23:05:04 +02:00
8c7e3c858f build-linux try latest actions Martin Bubel 2024-07-22 22:43:23 +02:00
1c972c115f add some checks and the use of artifact path to build-linux job Martin Bubel 2024-07-22 14:48:45 +02:00
4ab5fa87f0 linux-build: add missing creation of tar ball Martin Bubel 2024-07-22 14:23:47 +02:00
95a3484944 update handling of tar files in deploy-test Martin Bubel 2024-07-22 13:35:45 +02:00
b9084f3f37 add artifact extraction to deploy-test Martin Bubel 2024-07-22 11:57:03 +02:00
a2cce4209b inspect deploy job before doing the release Martin Bubel 2024-07-22 11:22:23 +02:00
030bef943e update manylinux build job's git checkout Martin Bubel 2024-07-22 11:17:57 +02:00
25aad2053c try alternativ actions in build-linux Martin Bubel 2024-07-22 11:15:27 +02:00
d8cc7f4347

Merge pull request #1091 from SheffieldML/devel Martin Bubel 2024-07-22 10:08:15 +02:00
b3799fa72d github actions: downgrad upload-artifact on github actions Martin Bubel 2024-07-22 10:06:02 +02:00
915b964b73 githubactions: downgrade upload-artifacts on manylinux job Martin Bubel 2024-07-22 10:05:21 +02:00
a5968b63e2 remove duplicate line from readme Martin Bubel 2024-07-22 10:04:42 +02:00
64048ab6c8

Merge pull request #1090 from SheffieldML/devel Martin Bubel 2024-07-22 08:57:27 +02:00
f394cf914c downgrade checkout action on manylinux container Martin Bubel 2024-07-22 08:56:19 +02:00
5c894d1091

Merge pull request #1086 from SheffieldML/devel Martin Bubel 2024-07-22 00:07:50 +02:00
6d577cee35 add setuptools installation to build workflow Martin Bubel 2024-07-21 23:49:05 +02:00
2fb9bb6f69 fix missing setuptools installation in workflow 1078-the-init-status-in-initialize_latent Martin Bubel 2024-07-21 17:42:09 +02:00
7e1cb7adee

Merge pull request #1084 from SheffieldML/devel Martin Bubel 2024-07-21 17:35:25 +02:00
282fcd4d68

Merge branch 'deploy' into devel Martin Bubel 2024-07-21 17:22:19 +02:00
d37e96d331

Merge pull request #1083 from SheffieldML/1071-release-patch-v1132 Martin Bubel 2024-07-21 17:13:37 +02:00
e619c9c45e bump version 1.13.2 1071-release-patch-v1132 Martin Bubel 2024-07-21 17:08:02 +02:00
dd04700c0e

Merge pull request #1082 from SheffieldML/1078-the-init-status-in-initialize_latent Martin Bubel 2024-07-21 17:06:26 +02:00
8274d02147 fix changes made to initializatino in #1078 Martin Bubel 2024-07-21 17:00:37 +02:00
0c78b17cde

Merge branch 'devel' into 1078-the-init-status-in-initialize_latent Martin Bubel 2024-07-21 16:49:26 +02:00
df47258170 fix github actions file Martin Bubel 2024-07-21 16:44:50 +02:00
4d3b49da7d update github workflow Martin Bubel 2024-07-21 16:44:50 +02:00
4959256c24 update dependency installation in github workflows Martin Bubel 2024-07-21 16:38:40 +02:00
c25238b7f0 Revert "update github workflow for testing" Martin Bubel 2024-07-21 16:09:17 +02:00
80713af2a3 fix typo in github actions Martin Bubel 2024-07-20 13:33:25 +02:00
816b02e32c update stationary_cython file Martin Bubel 2024-07-20 13:32:16 +02:00