398 commits

Author	SHA1	Message	Date
Zhenwen Dai	105a6c5377	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-11-03 16:04:59 +00:00
Zhenwen Dai	1840b7e6b8	extend inference X for all gp models	2014-11-03 16:04:15 +00:00
Alan Saul	13fd45e31f	Minor doc changes, fixed MPI dependency and 'stop' in var_dtc	2014-11-03 14:39:17 +00:00
Zhenwen Dai	3eb2fa3a8f	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-11-03 14:22:16 +00:00
Zhenwen Dai	24ad425a1b	bug fix for inferenceX	2014-11-03 14:11:46 +00:00
Alan Saul	7760730230	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-11-03 13:39:12 +00:00
Zhenwen Dai	78b50db138	add new inference X	2014-11-03 13:38:28 +00:00
Alan Saul	02c903c4eb	Tidied up laplace warnings	2014-11-03 13:36:26 +00:00
Zhenwen Dai	74765d0e0d	refine the docstring for hmc	2014-11-03 12:18:04 +00:00
Zhenwen Dai	6625e27fec	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-11-03 12:05:52 +00:00
Zhenwen Dai	b39188a5cd	add __init__.py to mcmc	2014-11-03 12:05:49 +00:00
Zhenwen Dai	f7ecfed179	add documentation for hmc	2014-11-03 12:04:46 +00:00
James Hensman	4905348dbe	changed init for mcmc	2014-11-03 11:26:31 +00:00
James Hensman	db6c50712e	removing dead bayesopt file	2014-11-03 11:15:40 +00:00
James Hensman	d1200a1be7	moving mcmc	2014-11-03 10:55:13 +00:00
Max Zwiessele	894829ffeb	[var dtc missing] deleted code for missing data inference	2014-10-29 08:24:25 +00:00
Max Zwiessele	f916717aad	[stochastics] updated some stuff on the stochastics	2014-10-29 08:23:57 +00:00
Max Zwiessele	236dfb505d	[Laplace] sum now around argument, instead of call to array	2014-10-29 08:21:03 +00:00
Max Zwiessele	eadce0ca4f	[stochastics] added doc	2014-10-22 15:31:52 +01:00
Max Zwiessele	536adf0782	[classification] sparse gp inference for EPDTC	2014-10-17 17:30:48 +01:00
Max Zwiessele	3d45870846	[stochastics] holds stochastic updates and rules	2014-10-16 14:17:49 +01:00
James Hensman	84c87f7886	beginning of adding variational GH quadrature to the likelihood class	2014-10-16 12:14:56 +01:00
Max Zwiessele	fa7807ee6f	[missing data] general implementation for subsetting data	2014-10-08 12:03:51 +01:00
Max Zwiessele	919be3ceba	[vardtc missing data] updated to new psi2 stuff	2014-10-06 11:00:34 +01:00
Max Zwiessele	6a260409fa	[param_to_array] deprecated and removed param_to_array from code, use param.values instead	2014-10-06 08:59:24 +01:00
James Hensman	ed754823be	NonContiguos tests fixed for Kdiag_dX	2014-09-15 09:55:02 +01:00
Zhenwen Dai	d7eee6aa00	finish the debug of sparsegp_mpi	2014-09-12 10:36:01 +01:00
Zhenwen Dai	5697a533e7	a bug fix for VarDTC_minibatch	2014-09-09 12:17:29 +01:00
Zhenwen Dai	0f47a6b35f	adapt the numerical stability strategy from VarDTC to VarDTC_minibatch	2014-09-09 11:46:19 +01:00
Zhenwen Dai	4e83501ea5	update sparse_gp_mpi for new interface	2014-09-08 17:22:37 +01:00
Zhenwen Dai	e332c1e246	more for debug	2014-09-01 18:39:43 +01:00
Zhenwen Dai	a6e7d01ad2	add debug util module and try to debug sparsegp_mpi	2014-08-29 15:21:21 +01:00
Zhenwen Dai	f29753e9e6	generalize the interface of mpi	2014-08-26 18:12:41 +01:00
Zhenwen Dai	77a96efeba	improve numerical stability of vardtc_parallel	2014-08-26 16:38:00 +01:00
Zhenwen Dai	785c580032	merge the current devel into psi2	2014-08-11 18:01:23 +01:00
Zhenwen Dai	98d91e6db2	Merge branch 'hmc' into devel ... A HMC sampler for GP parameters	2014-08-07 14:30:03 +01:00
Zhenwen Dai	c3bb7b28a1	debug HMC shortcut	2014-08-07 14:28:46 +01:00
Zhenwen Dai	e0a7884270	hmc shortcut	2014-08-06 22:15:28 +01:00
Zhenwen Dai	d11a2c482c	correct the initial distribution of p	2014-08-06 16:33:35 +01:00
Ricardo	140fdc8211	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-08-06 14:45:20 +01:00
Zhenwen Dai	23120c53e2	remove prints	2014-08-06 11:10:34 +01:00
Zhenwen Dai	0a1e7aface	debug hmc code	2014-08-06 11:01:08 +01:00
Zhenwen Dai	18a1513edb	add hmc.py	2014-08-05 16:48:35 +01:00
Niu	e17e539bce	initial implementation of hmc	2014-08-02 14:06:24 +01:00
mzwiessele	8c80fb9c52	[inference] less constant jitter, and jitter adjustements ... Conflicts: GPy/util/linalg.py	2014-07-22 09:26:20 -07:00
Ricardo	369cc0ba2b	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-07-11 10:43:02 +01:00
maxz	08555c5f56	[vardtc missing] logging ... Conflicts: GPy/inference/latent_function_inference/var_dtc.py	2014-07-08 15:42:13 -07:00
mzwiessele	7c8de7fff8	[whitespaces]	2014-07-07 16:01:12 -07:00
mzwiessele	8dacea2c13	[var dtc missing]	2014-07-02 12:30:33 -07:00
mzwiessele	c8da45aa8f	[var dtc missing] performance increase with right iterations	2014-07-02 12:07:40 -07:00