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moving mcmc

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This commit is contained in:
James Hensman 2014-11-03 10:55:13 +00:00
parent 70afcd3ddd
commit d1200a1be7
8 changed files with 12 additions and 59 deletions
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1
GPy/inference/latent_function_inference/var_dtc.py
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@ -167,6 +167,7 @@ class VarDTC(LatentFunctionInference):
woodbury_vector = Cpsi1Vf # == Cpsi1V
else:
print 'foobar'
stop
psi1V = np.dot(Y.T*beta, psi1).T
tmp, _ = dtrtrs(Lm, psi1V, lower=1, trans=0)
tmp, _ = dpotrs(LB, tmp, lower=1)

0
GPy/inference/optimization/hmc.py → GPy/inference/mcmc/hmc.py
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0
GPy/inference/optimization/samplers.py → GPy/inference/mcmc/samplers.py
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8
doc/GPy.inference.optimization.rst
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@ -68,6 +68,14 @@ GPy.inference.optimization.sgd module
:undoc-members:
:show-inheritance:
GPy.inference.optimization.stochastics module
---------------------------------------------
.. automodule:: GPy.inference.optimization.stochastics
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------

40
doc/GPy.likelihoods.rst
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@ -60,14 +60,6 @@ GPy.likelihoods.mixed_noise module
:undoc-members:
:show-inheritance:
GPy.likelihoods.negative_binomial module
----------------------------------------
.. automodule:: GPy.likelihoods.negative_binomial
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.ordinal module
------------------------------
@ -84,30 +76,6 @@ GPy.likelihoods.poisson module
:undoc-members:
:show-inheritance:
GPy.likelihoods.skew_exponential module
---------------------------------------
.. automodule:: GPy.likelihoods.skew_exponential
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.skew_normal module
----------------------------------
.. automodule:: GPy.likelihoods.skew_normal
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.sstudent_t module
---------------------------------
.. automodule:: GPy.likelihoods.sstudent_t
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.student_t module
--------------------------------
@ -116,14 +84,6 @@ GPy.likelihoods.student_t module
:undoc-members:
:show-inheritance:
GPy.likelihoods.symbolic module
-------------------------------
.. automodule:: GPy.likelihoods.symbolic
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------

8
doc/GPy.mappings.rst
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@ -36,14 +36,6 @@ GPy.mappings.mlp module
:undoc-members:
:show-inheritance:
GPy.mappings.symbolic module
----------------------------
.. automodule:: GPy.mappings.symbolic
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------

6
doc/GPy.testing.rst
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@ -84,10 +84,10 @@ GPy.testing.prior_tests module
:undoc-members:
:show-inheritance:
GPy.testing.tie_tests module
----------------------------
GPy.testing.sparse_tests module
-------------------------------
.. automodule:: GPy.testing.tie_tests
.. automodule:: GPy.testing.sparse_tests
:members:
:undoc-members:
:show-inheritance:

8
doc/GPy.util.rst
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@ -204,14 +204,6 @@ GPy.util.subarray_and_sorting module
:undoc-members:
:show-inheritance:
GPy.util.symbolic module
------------------------
.. automodule:: GPy.util.symbolic
:members:
:undoc-members:
:show-inheritance:
GPy.util.univariate_Gaussian module
-----------------------------------