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262 commits

Author SHA1 Message Date
Max Zwiessele
924a319b98 catch linalg errors inside model and more sopihisticated non-pd checks 2013-06-07 13:34:45 +01:00
James Hensman
fae84d6497 fixed a transpose bug in the sparse GP prediction 2013-06-06 16:27:39 +01:00
Alan Saul
7cf43baf05 Merged 2013-06-06 14:47:45 +01:00
James Hensman
5e4c24d652 psi1 is now the right way around 2013-06-06 14:38:48 +01:00
Alan Saul
e587618339 Factored out lapack into utils so we can check version and give deprecation warnings 2013-06-06 14:04:14 +01:00
Ricardo
8d8408dee0 _Xmean is now Xoffset and _Xstd is now _Xscale 2013-06-05 19:18:29 +01:00
Ricardo
a2bc6ec1e6 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-06-05 18:02:02 +01:00
Ricardo
616e8c9026 Minor changes 2013-06-05 18:01:53 +01:00
Ricardo
ab6a87a4d5 pseudo_EM modified 2013-06-05 18:01:28 +01:00
Max Zwiessele
a6ed003194 num_data refactoring 2013-06-05 17:33:22 +01:00
Ricardo
c774432fee Merge branch 'devel' of github.com:SheffieldML/GPy into devel 
Conflicts:
	GPy/core/fitc.py
 2013-06-05 16:37:57 +01:00
Ricardo
7fb3466fba FITC is back 2013-06-05 16:30:41 +01:00
Max Zwiessele
b129e6a669 merged num_data conflicts 2013-06-05 16:21:54 +01:00
James Hensman
527586a012 lots of bugfixes after refactoring 2013-06-05 16:14:43 +01:00
Max Zwiessele
0490861099 kern params adapted: Nparams > num_params and fixes of input_dim 2013-06-05 16:14:30 +01:00
Max Zwiessele
db78b233b8 Nparams > num_params and Nparam_tranformed > num_params_transformed 2013-06-05 15:29:18 +01:00
Ricardo
f60c8ab899 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-06-05 15:13:42 +01:00
Ricardo
8e7a71c63e seems to run now 2013-06-05 15:13:17 +01:00
Ricardo
8d07df6503 change input for output 2013-06-05 15:13:00 +01:00
James Hensman
68bf4dc436 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-06-05 14:52:58 +01:00
James Hensman
56a4bc4e21 an assortment of fixes 2013-06-05 14:52:37 +01:00
Ricardo
5f0a020022 new file 2013-06-05 14:42:31 +01:00
Ricardo
aac4f6a237 Fixed naming to standardized PEP8 2013-06-05 14:39:32 +01:00
Ricardo
b3eeacd956 Merged and fixed conflicts, names still need changing accordingly 2013-06-05 14:22:16 +01:00
Max Zwiessele
7040b26f41 refactoring files added 2013-06-05 14:11:49 +01:00
Ricardo
1dcbd1ee66 New FITC model and other stuff 2013-06-05 14:11:28 +01:00
Max Zwiessele
802d6e7792 merged regression example, corrected refactoring 2013-06-05 14:02:59 +01:00
James Hensman
d43f4c911c preferred optimiser is now scg bydefault 2013-06-05 13:58:04 +01:00
James Hensman
adb8a98cb3 fixed the multiple optima demo 2013-06-05 13:08:51 +01:00
Max Zwiessele
2e5e8ac026 REFACTORING: model names, lowercase, classes uppercase 2013-06-05 13:02:03 +01:00
James Hensman
dea4359b4e changed the behaviour of checkgrad 
checkgrad usd to check the passed string (for name matching) against the
list of _get_param_names(). Then it would index along
_get_param_names_transformed()!

this led to inconsistensies when fixed or tied variables were used,
which screwed up the ordering of the variable names.

We now match against _get_param_names_transformed().
 2013-06-05 12:08:33 +01:00
Alan Saul
97f3357b6d Replaced Q by input_dim 2013-06-05 11:17:15 +01:00
James Hensman
1c51eae954 made input_ubncertainty plotting work, modified example a little 2013-06-05 08:59:47 +01:00
James Hensman
e53b97e09f Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-06-04 18:25:56 +01:00
James Hensman
a5e1985d9d plotting in the model behaves better 2013-06-04 18:25:46 +01:00
Max Zwiessele
a32f9bf9dd Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-06-04 18:09:08 +01:00
Max Zwiessele
75f4e26b23 added priors behaviour as intended and issue #38 closed and fixed 2013-06-04 18:09:02 +01:00
James Hensman
6196ed794e fixed printing, some example 2013-06-04 17:54:36 +01:00
James Hensman
6d64559f1f re-merged. only RA's errors (probit?) remain 2013-06-04 17:38:05 +01:00
Max Zwiessele
c4cd93cd17 MERGE 2013-06-04 17:27:59 +01:00
Max Zwiessele
c7ac1ed9d8 domains added and class names in priors capitalized 2013-06-04 17:21:56 +01:00
James Hensman
e29e5624f5 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-06-04 17:19:44 +01:00
James Hensman
edae1032c7 tests are now passing 2013-06-04 17:19:33 +01:00
Max Zwiessele
3546650d15 added domain matching in set_prior 2013-06-04 17:12:17 +01:00
Max Zwiessele
e02804a671 added domains to priors 2013-06-04 17:03:29 +01:00
Max Zwiessele
dbc4bc3f3c Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-06-04 16:50:04 +01:00
Max Zwiessele
3fceef9d67 added domains in transformatins and priors 2013-06-04 16:49:42 +01:00
James Hensman
362389781b fixing some examples 2013-06-04 16:28:20 +01:00
James Hensman
d84ae52d41 fixed Alan's dependency nightmare. 2013-06-04 16:21:00 +01:00
Alan Saul
f403e5b0b7 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-06-04 16:05:44 +01:00