Commit graph

3514 commits

Author SHA1 Message Date
mzwiessele
7381531d23 [sparse gp] doc changes for missing data 2015-03-23 08:48:06 +00:00
mzwiessele
b47e5ab4bb [ploting init] minor 2015-03-23 08:47:45 +00:00
mzwiessele
f771944629 [optimization] model prints how many parameters there are to optimize 2015-03-23 08:46:46 +00:00
Zhenwen Dai
ea5f25900c remove printing 2015-03-19 11:33:59 +00:00
Zhenwen Dai
7152f41f82 fix the param renaming problem 2015-03-19 11:33:00 +00:00
Zhenwen Dai
59bd0d3b6e Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-03-13 09:47:41 +00:00
Zhenwen Dai
7f30fef698 add trigger update to set_{X,Y,Z} 2015-03-13 09:47:36 +00:00
mzwiessele
d01a0a61e2 [optimize] max_f_eval -> max_iters 2015-03-11 10:42:44 +00:00
mzwiessele
77b4dc7d44 [optimize] added clear functionality for ipython notebook and kern input sensitivity error handling 2015-03-11 10:37:21 +00:00
Zhenwen Dai
c6cf0bc121 add set_Z function 2015-03-09 17:26:18 +00:00
Alan Saul
233c5ee8b4 Updated other likelihoods to give back logpdf and gradients for each link_f rather than summing on the inside 2015-03-09 10:27:21 +00:00
James Hensman
48821a6b73 Added binomial likelihood
Also some changes to pass through Y_metadata, where it had previously
been (errorneously) omitted.
2015-03-05 10:26:02 +00:00
James Hensman
89b8b0d298 messy merge 2015-03-03 17:08:33 +00:00
James Hensman
965f1aa2cb removed climin dependency unless actually needed 2015-03-03 17:04:15 +00:00
frb-yousefi
df4dde91c5 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2015-02-27 13:24:25 +00:00
frb-yousefi
46e67c03cf DGPLVM 2015-02-27 13:23:08 +00:00
mzwiessele
b616214252 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2015-02-26 14:24:11 +00:00
mzwiessele
ed6da422eb [pickling errors] due to too little constant jitter, the gradient checks in pickle tests did not pass 2015-02-26 14:24:07 +00:00
mzwiessele
f1e7760403 [verbose optimization] added automatic detection of ipython notebook support, this is experimental 2015-02-26 13:52:20 +00:00
mzwiessele
fc4b38fe59 [sparse gp] prediction without missing data and uncertain inputs was bugged 2015-02-26 13:51:47 +00:00
James Hensman
f1da8c0fec Merge branch 'devel' of github.com:/sheffieldml/GPy into devel 2015-02-25 16:10:38 +00:00
mzwiessele
924899069e [optimization] experimental auto detect of ipython notebook 2015-02-24 11:56:36 +00:00
mzwiessele
72c6b66983 [updateable] update field in observable 2015-02-24 11:56:06 +00:00
mzwiessele
85ae035e32 [var_dtc] constant jitter 1e-10 2015-02-24 11:55:22 +00:00
Zhenwen Dai
11cc5d16f4 add save param_array 2015-02-23 16:19:14 +00:00
javiergonzalezh
b49228d1d0 minor error in corregionalization corrected 2015-02-23 15:02:50 +00:00
mzwiessele
6435b83c7a [sparse gp] prediction with uncertain inputs 2015-02-21 14:43:10 +01:00
Zhenwen Dai
9f7ae611ed force set_XY to update the model 2015-02-17 10:49:06 +00:00
James Hensman
7920ff0b4d Merge branch 'devel' of github.com:/sheffieldml/GPy into devel 2015-02-11 11:49:59 +00:00
James Hensman
482bd1472c reconfigured svgp inference a little 2015-02-11 11:49:45 +00:00
James Hensman
393b9e94ba added more stable expectations for Bernoulli 2015-02-10 16:15:37 +00:00
James Hensman
06d7e690f3 minor weave/numpy bug in coregionalize 2015-02-10 15:54:59 +00:00
James Hensman
475eceb4dd Merge branch 'devel' of github.com:sheffieldml/GPy into devel 2015-02-10 14:23:11 +00:00
James Hensman
b499a870fb fixed a plotting bug for sliced plots 2015-02-10 14:23:03 +00:00
Alan Saul
f690192384 Added logging for jitter so we know how much has been added and how many tries have been taken 2015-02-10 11:52:40 +00:00
Alan Saul
cfdd72fc72 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-02-09 19:36:08 +00:00
Alan Saul
29d153e185 Bug in linalg jitchol!!! 2015-02-09 19:35:46 +00:00
Max Zwiessele
e967c95ef0 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-01-30 09:43:06 +00:00
Max Zwiessele
167e9c538d [var dtc] added code for additional covariates, not affecting normal procedures 2015-01-30 09:43:02 +00:00
Neil Lawrence
47cbdc265e Update __init__.py
Add inference to __init__.py
2015-01-21 08:15:52 +01:00
Neil Lawrence
8288240b7d Update hmc.py 2015-01-21 08:14:35 +01:00
Cristian Guarnizo
81c57140c4 Update __init__.py
Added EQ_ODE2.
2015-01-19 11:28:27 -05:00
Cristian Guarnizo
88f69312eb Create eq_ode2.py
Added ODE2 kernel for latent force models.
2015-01-19 11:27:07 -05:00
Max Zwiessele
57e941140c [opt] unified printing of status of optimization 2015-01-15 09:02:45 +00:00
Max Zwiessele
4deac0103c [transformations] bugfix for pickling 2015-01-15 09:02:22 +00:00
Max Zwiessele
7fbbdafdbf [opt] bugfix 2015-01-13 15:07:24 +00:00
Max Zwiessele
be3c8f5202 [verbose opt] messages would be overwritten when using ipython_notebooks, fixed 2015-01-13 14:29:28 +00:00
Max Zwiessele
07e85042ec [kern] added Fixed kern to import list in GPY.kern 2015-01-13 14:05:50 +00:00
Max Zwiessele
53dcd3f9fa [objective grads] undid the change, as this would lead to dramatic problems in reloading old models using the pickle module 2015-01-13 13:53:28 +00:00
Max Zwiessele
20eff02061 [objective grads] undid the change, as this would lead to dramatic problems in reloading old models using the pickle module 2015-01-13 13:46:49 +00:00