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Author SHA1 Message Date
Akash Kumar Dhaka
54f530a22b adding some test cases for EP.. more work needs to be done, these are some high level test cases .. 2017-08-10 11:14:40 +03:00
Moreno
255d97a917 Refactor EP and EPDTC 2017-08-10 11:14:40 +03:00
esiivola
7c4e2f21f8 Added initial version of the refactored EP 2017-08-10 11:14:40 +03:00
esiivola
0d06dc3b4e Added initial version of the refactored EP 2017-08-10 11:14:40 +03:00
esiivola
dfc5bd42dc Added initial version of the refactored EP 2017-08-10 11:14:40 +03:00
mzwiessele
e849a4c62d fix: pkg: CHANGELOG 2017-08-10 11:14:40 +03:00
mzwiessele
b143e92b5c Bump version: 1.6.1 → 1.6.2 2017-08-10 11:14:40 +03:00
mzwiessele
000d832830 fix: updated keywords 2017-08-10 11:14:40 +03:00
Alex Feldstein
6f738bd2b4 fix in sparse_gp_mpi optimizer 2017-08-10 11:14:40 +03:00
Alex Feldstein
ef924eba6c fix for parallel optimization 2017-08-10 11:14:40 +03:00
Moreno
63751de912 Changes in EP/EPDTC to fix numerical issues and increase the flexibility of the inference. 
Changes to avoid numerical issues and improve the performance:
    - Keep value of the EP parameters between calls
    - Enforce positivity of tau_tilde
    - Stable computation of the EP moments for the Bernoulli likelihood
    - Compute marginal in the GP model without directly inverting tau_tilde

    Changes to improve the flexibility:
    - Add parameter for maximum number of iterations
    - Distinguish between alternated/nested mode
    - Distinguish between sequential/parallel updates in EP
 2017-06-01 11:59:04 +03:00
Max Zwiessele
113f84d6a7 cython in linalg 
did set cython to working if linalg_cython was importable.
 2017-06-01 11:59:04 +03:00
mzwiessele
8c72eb2932 chg: pkg: CHANGELOG update 2017-06-01 11:59:04 +03:00
mzwiessele
335ecec584 Bump version: 1.6.0 → 1.6.1 2017-06-01 11:59:04 +03:00
mzwiessele
0ee2910391 fix: beiwang will add GMM in full 2017-06-01 11:59:04 +03:00
mzwiessele
cc93fe54af chg: pkg: CHANGELOG update 2017-06-01 11:59:04 +03:00
mzwiessele
7b58495dc7 Bump version: 1.5.9 → 1.6.0 2017-06-01 11:59:04 +03:00
mzwiessele
011e3d6439 fix: kernel tests and variational tests 2017-06-01 11:59:04 +03:00
mzwiessele
703a136c8c fix: plotting tests for new matplotlib 2017-06-01 11:59:04 +03:00
mzwiessele
970bd5399b fix: model tests numpy integer error 2017-06-01 11:59:04 +03:00
mzwiessele
b8aabb97f8 fix: replot with new matplotlib 2017-06-01 11:59:04 +03:00
mzwiessele
1b9b1a95a6 fix: offline plotting workaround with squeezing arrays 2017-06-01 11:59:04 +03:00
mzwiessele
96cc0838eb fix: Fixed numpy 1.12 indexing and shape preservation 2017-06-01 11:59:04 +03:00
Alex Feldstein
a7a2e53f6d provide two classes for plotly plots to remove global variable 2017-06-01 11:59:04 +03:00
mzwiessele
a207d09d2b fix: pkg: changelog 2017-06-01 11:59:04 +03:00
mzwiessele
450717c5c8 Bump version: 1.5.8 → 1.5.9 2017-06-01 11:59:04 +03:00
mzwiessele
9cacf46c18 chg: pkg: CHENGELOG update 2017-06-01 11:59:04 +03:00
mzwiessele
756b618ef4 Bump version: 1.5.7 → 1.5.8 2017-06-01 11:59:04 +03:00
mzwiessele
9eee68e831 fix: pkg: dim reduction simulation with different functions 2017-06-01 11:59:04 +03:00
Alex Feldstein
66bd0b6583 add offline plotting for plotly 2017-06-01 11:59:04 +03:00
Zhenwen Dai
e74a31c482 Update ss_gplvm.py 
resolve the future warning: FutureWarning:comparison to `None` will result in an elementwise object comparison in the future.
 2017-01-29 11:38:13 +00:00
Max Zwiessele
fce0e4258b Merge pull request #472 from SheffieldML/predictive_gradients 
fix: predictive_gradients for new posterior class
 2017-01-10 15:43:56 +00:00
mzwiessele
6fc0cc630c fix: predictive_gradients for new posterior class 2017-01-10 14:38:09 +00:00
Max Zwiessele
f36a394766 Merge pull request #470 from SheffieldML/plotting_fix 
Plotting fix
 2017-01-10 13:48:28 +00:00
mzwiessele
b17b92043c chg: pkg: CHANGELOG update 2017-01-10 12:53:34 +00:00
mzwiessele
3608cff438 Bump version: 1.5.6 → 1.5.7 2017-01-09 11:05:20 +00:00
mzwiessele
b6d2cf4406 fix: removed additional dict line 2017-01-09 11:01:30 +00:00
mzwiessele
fe3bad7200 fix: plotting also allows 3D (capitals) 2017-01-09 10:59:51 +00:00
Safrone
14046705cf fix: fallback for when no environment variables are set (#467) 
* fix: dev: add or in home directory getting

adds another or when getting the home directory with os.getenv() so that if neither $HOME nor $USERPROFILE environment variable is set, os.path.join() will not fail by getting a None and the config will revert to the default configuration file.

* fix: remove extra statement
 2017-01-09 09:50:29 +00:00
Teo de Campos
a2f67febb4 Changed the order of the operations, ensuring that the covariance matrix is symmetric despite numerical precision issues. 
Suggested by Alan.
 2016-12-06 11:01:45 -02:00
beiwang
b1935292d9 Delete gmm_bayesian_gplvm.py 2016-11-11 19:54:57 +00:00
beiwang
567601344c gmm_creation 2016-11-11 19:18:39 +00:00
beiwang
6aab528af2 gmm_creation 2016-11-11 18:12:14 +00:00
mzwiessele
daa28f5e60 fix: pkg: changelogrc and changelog update 2016-11-07 10:54:04 +00:00
mzwiessele
5d480bfc68 fix: pkg: gitchangelog rc had missing line 2016-11-07 10:52:23 +00:00
mzwiessele
977d336148 Bump version: 1.5.5 → 1.5.6 2016-11-07 10:50:43 +00:00
Max Zwiessele
975b561d96 Merge pull request #448 from thangbui/devel 
Added pep.py -- Sparse Gaussian processes using Power Expectation Propagation
 2016-11-07 10:48:49 +00:00
Thang Bui
7b384ae258 renamed pep test scripts 2016-11-07 09:54:50 +00:00
Max Zwiessele
323b8c4283 Merge pull request #452 from SheffieldML/setupreq 
fix: Installation #451
 2016-11-07 09:04:24 +00:00
Thang Bui
323204541e fixed seed in pep test script #448 2016-11-01 16:48:45 +00:00