Commit graph

3540 commits

Author SHA1 Message Date
Zhenwen Dai
4f0894b6b7 change the name of kernel DiffGenomeKern to DEtime 2015-03-30 15:25:59 +01:00
Alan Saul
582aa4f406 More samples for predictive quantile 2015-03-27 15:30:40 +00:00
Alan Saul
cbb558d751 Merge branch 'saul_merge' into devel 2015-03-27 15:16:14 +00:00
Alan Saul
ac8df57021 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-03-27 15:15:50 +00:00
Alan Saul
1a253ff82a Added safe_exp and tests 2015-03-27 15:14:52 +00:00
James Hensman
4cf1f5494f extra kernel stressing in benchmarks, bugfix in svgp 2015-03-27 15:12:52 +00:00
James Hensman
ba648900d2 adding the beginnings of some benchmarks 2015-03-27 14:48:18 +00:00
Alan Saul
4d27fddd37 Small tidying up 2015-03-27 14:24:24 +00:00
Alan Saul
3c7a1b9a91 Merge branch 'devel' into saul_merge 2015-03-27 14:17:34 +00:00
Alan Saul
dd6219fb7e Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-03-27 14:17:13 +00:00
Alan Saul
0ea3d33695 Merging with private repo, mostly fixed 2015-03-27 14:17:03 +00:00
Alan Saul
6a1de2bfc2 Added block matrix dot product 2015-03-27 13:59:31 +00:00
Alan Saul
932b5468ae Adding likelihoods and block matrices 2015-03-27 13:59:31 +00:00
Alan Saul
d7316ee7d9 Relaxed inference test requirement 2015-03-27 13:49:12 +00:00
James Hensman
55dba3d2d9 shape changes for gradeitns of likelihood parameters in variational_expectations 2015-03-27 11:14:41 +00:00
James Hensman
e74bfd81c6 added some clarifying comments with NDL 2015-03-25 14:22:39 +00:00
James Hensman
534e0df606 some tests for the svgp, and some changes to the likelihoods 2015-03-24 14:11:50 +00:00
James Hensman
53081c704d derivatives of likelihood things now working for svgp 2015-03-24 13:58:41 +00:00
James Hensman
611febe7eb stupid bug 2015-03-23 14:48:13 +00:00
James Hensman
efb32282de Merge branch 'devel' of github.com:/sheffieldml/GPy into devel 2015-03-23 14:24:41 +00:00
mzwiessele
66c7da879a [verbose opt] ipython notebook new version widget changes 2015-03-23 14:30:25 +00:00
mzwiessele
b0ee68a8b9 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2015-03-23 14:29:15 +00:00
mzwiessele
871f3a6ea3 [verbose opt] ipython notebook new version widget changes 2015-03-23 14:28:56 +00:00
James Hensman
9976e56bea lots of changes to mappings 2015-03-23 14:24:32 +00:00
James Hensman
99545500b1 a little work on mappings 2015-03-23 12:38:15 +00:00
mzwiessele
1b46a99e75 [optimization] html widget api changes in ipython notebook? 2015-03-23 09:57:53 +00:00
mzwiessele
7381531d23 [sparse gp] doc changes for missing data 2015-03-23 08:48:06 +00:00
mzwiessele
b47e5ab4bb [ploting init] minor 2015-03-23 08:47:45 +00:00
mzwiessele
f771944629 [optimization] model prints how many parameters there are to optimize 2015-03-23 08:46:46 +00:00
Zhenwen Dai
ea5f25900c remove printing 2015-03-19 11:33:59 +00:00
Zhenwen Dai
7152f41f82 fix the param renaming problem 2015-03-19 11:33:00 +00:00
Zhenwen Dai
59bd0d3b6e Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-03-13 09:47:41 +00:00
Zhenwen Dai
7f30fef698 add trigger update to set_{X,Y,Z} 2015-03-13 09:47:36 +00:00
mzwiessele
d01a0a61e2 [optimize] max_f_eval -> max_iters 2015-03-11 10:42:44 +00:00
mzwiessele
77b4dc7d44 [optimize] added clear functionality for ipython notebook and kern input sensitivity error handling 2015-03-11 10:37:21 +00:00
Zhenwen Dai
c6cf0bc121 add set_Z function 2015-03-09 17:26:18 +00:00
Alan Saul
233c5ee8b4 Updated other likelihoods to give back logpdf and gradients for each link_f rather than summing on the inside 2015-03-09 10:27:21 +00:00
James Hensman
48821a6b73 Added binomial likelihood
Also some changes to pass through Y_metadata, where it had previously
been (errorneously) omitted.
2015-03-05 10:26:02 +00:00
James Hensman
89b8b0d298 messy merge 2015-03-03 17:08:33 +00:00
James Hensman
965f1aa2cb removed climin dependency unless actually needed 2015-03-03 17:04:15 +00:00
frb-yousefi
df4dde91c5 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2015-02-27 13:24:25 +00:00
frb-yousefi
46e67c03cf DGPLVM 2015-02-27 13:23:08 +00:00
mzwiessele
b616214252 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2015-02-26 14:24:11 +00:00
mzwiessele
ed6da422eb [pickling errors] due to too little constant jitter, the gradient checks in pickle tests did not pass 2015-02-26 14:24:07 +00:00
mzwiessele
f1e7760403 [verbose optimization] added automatic detection of ipython notebook support, this is experimental 2015-02-26 13:52:20 +00:00
mzwiessele
fc4b38fe59 [sparse gp] prediction without missing data and uncertain inputs was bugged 2015-02-26 13:51:47 +00:00
James Hensman
f1da8c0fec Merge branch 'devel' of github.com:/sheffieldml/GPy into devel 2015-02-25 16:10:38 +00:00
mzwiessele
924899069e [optimization] experimental auto detect of ipython notebook 2015-02-24 11:56:36 +00:00
mzwiessele
72c6b66983 [updateable] update field in observable 2015-02-24 11:56:06 +00:00
mzwiessele
85ae035e32 [var_dtc] constant jitter 1e-10 2015-02-24 11:55:22 +00:00