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Author SHA1 Message Date
mzwiessele
4a8a9bac54 [var dtc missing] no caching of indexed y anymore, no subarray indexing 2014-07-02 11:05:11 -07:00
mzwiessele
a9443417d7 [logging] more on logging 2014-07-02 10:15:18 -07:00
mzwiessele
eb9fb180fb var dtc missing] memory efficiency greatly improved 2014-07-02 09:17:27 -07:00
mzwiessele
89f7f2dc73 [parameterized] init greatly improved 2014-07-02 09:17:14 -07:00
mzwiessele
8a8818aa91 yak shaving and whitespaces 2014-06-30 10:26:17 -07:00
mzwiessele
b9e61b0ed1 [brendan] netpbmfile 2014-06-30 10:26:05 -07:00
mzwiessele
431f67a8e3 [optimize] bugfix 2014-06-30 09:24:26 -07:00
mzwiessele
8ef16f5529 [parameterized] bugfix: downstream parameters did not get constraint update on add_parameter 2014-06-30 09:20:56 -07:00
mzwiessele
cbcb0a9b99 [parameterized] adding parameters in hierarchy, did not update higher siblings 2014-06-30 08:18:05 -07:00
mzwiessele
67620e47d0 [cacher] removed logger 2014-06-30 08:17:47 -07:00
mzwiessele
3ac8f477fa [var dtc missing] yak shaving 2014-06-27 16:22:57 -07:00
mzwiessele
35b778b45f [logging] 2014-06-27 16:19:23 -07:00
mzwiessele
8213b5011c [gp] memory > only one copy 2014-06-27 15:21:12 -07:00
mzwiessele
06ee090a50 [subbarray] logging 2014-06-27 15:21:12 -07:00
mzwiessele
83e2df838d [vardtc missing] performance fixes 2014-06-27 08:04:20 -07:00
mzwiessele
66390cbf8a [optimizer array] bugfix, when updating the model the optimizer array would not update 2014-06-25 09:33:17 -07:00
mzwiessele
94bff66c7b [optmimize] bugfix 2014-06-20 12:10:21 -07:00
mzwiessele
73d9118043 [whitespaces] & [opt] minor fix of optimizer, when Optimizer is provided (set model to self) 2014-06-20 10:28:32 -07:00
mzwiessele
eaa18e3512 [model] optimizer can now be an optimizer instance, instead of a string 2014-06-19 12:07:58 -07:00
mzwiessele
1e006f63b5 [parallel vardtc] minor adjustments to work with current implementation of 
psi stats
 2014-06-18 08:56:48 -07:00
mzwiessele
c62dd85418 [randomize] adjusted parameters to go into random generator right 2014-06-18 08:52:33 -07:00
mzwiessele
47d10600d1 [scg] minor adjustements based on original publication 2014-06-18 08:52:27 -07:00
Alan Saul
fdf8f984c1 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2014-06-09 17:39:44 +01:00
Max Zwiessele
1102fa3320 [linalg] fixed scipy 0.14 bugfix. sciy.linalg.lapack.dpotri was fixed to work right with lower=1, thus, the hack is gone now from GPy.util.linalg.dpotri, when using scipy 0.14 and higher 2014-06-09 09:28:40 -07:00
James Hensman
322d0d6d01 re-doing the lee dataset 2014-06-08 21:06:29 +01:00
James Hensman
0812a0e15c Revert "Minor edits to reading Lee data in datasets.py" 
This reverts commit 730e229238.
 2014-06-08 21:02:42 +01:00
durrande
1dfe7ed0a8 fixed unnecessary warnings when using periodic kernels 2014-06-08 18:37:07 +02:00
Alan Saul
4ecf9a2cf8 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2014-06-06 13:17:52 +01:00
Neil Lawrence
ec1b9190f5 Datasets.py updates should have been committed before. 2014-06-05 18:49:15 +01:00
Neil Lawrence
3003718ea9 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2014-06-05 18:48:55 +01:00
James Hensman
d20222a90b reverting Maxs linalg changes 2014-06-04 15:43:03 +01:00
Neil Lawrence
730e229238 Minor edits to reading Lee data in datasets.py 2014-06-04 11:21:25 +01:00
Max Zwiessele
38ed60385a linalg had lowers missing for windows libraries to work correctly 2014-06-03 15:42:32 -07:00
Zhenwen Dai
2b5753e6f6 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2014-05-30 18:56:32 +01:00
Zhenwen Dai
6e30f3c6c3 [splitkern] support idx_p==0 2014-05-30 18:56:23 +01:00
James Hensman
2a69312aa0 Merge branc( 'devel' of github.com:SheffieldML/GPy into devel 2014-05-30 09:22:47 +01:00
James Hensman
ed74a81732 editied whitespace 2014-05-30 09:22:43 +01:00
Zhenwen Dai
47ba2542c2 minor changes 2014-05-29 17:11:26 +01:00
Zhenwen Dai
4c538efb64 DiffGenomeKern bug fix 2014-05-29 17:10:14 +01:00
Neil Lawrence
dd6f7c1f4c Modified Spellman et al data load. 2014-05-29 16:57:01 +01:00
zhenwen
ea1326c8c8 [splitkern] some more changes 2014-05-29 14:54:11 +01:00
Zhenwen Dai
5f08152651 [splitkern] some additional implmentation 2014-05-29 14:03:59 +01:00
Zhenwen Dai
c2568d2e9f [splitkern] bug fix 2014-05-29 13:21:14 +01:00
Zhenwen Dai
f9291fe7da [splitkern] buf fix 2014-05-29 11:21:19 +01:00
Zhenwen Dai
5d728f7715 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2014-05-29 10:30:11 +01:00
Zhenwen Dai
74b62ab3c3 merge the bug of fixing function 2014-05-29 10:29:18 +01:00
James Hensman
dadbc6c92d merging 2014-05-29 10:27:37 +01:00
Zhenwen Dai
988889247c developing split kernel 2014-05-29 10:27:36 +01:00
James Hensman
7a3d13894f reverting the fixing behaviour. 
two reasons: 1) the new behaviour is confusing for new users. Either
something is fixed, or it's not. 2) the fixing didn't work! things that
should have been fixed were passed to the optimizer for optimization.

If we really want to save keystrokes, consider this:

m.foo.fix()
m.foo.unfix()
m.foo.constrain_positive()

is the same as

m.foo.fix()
m.foo.constrain_positive()

but the latter throws a warning.
 2014-05-29 10:24:20 +01:00
Zhenwen Dai
627cf9c86c developing split kernel 2014-05-29 10:13:16 +01:00