trustgraph/docs/tech-specs/STRUCTURED_DATA_SCHEMAS.md
cybermaggedon 89be656990
Release/v1.2 (#457)
* Bump setup.py versions for 1.1

* PoC MCP server (#419)

* Very initial MCP server PoC for TrustGraph

* Put service on port 8000

* Add MCP container and packages to buildout

* Update docs for API/CLI changes in 1.0 (#421)

* Update some API basics for the 0.23/1.0 API change

* Add MCP container push (#425)

* Add command args to the MCP server (#426)

* Host and port parameters

* Added websocket arg

* More docs

* MCP client support (#427)

- MCP client service
- Tool request/response schema
- API gateway support for mcp-tool
- Message translation for tool request & response
- Make mcp-tool using configuration service for information
  about where the MCP services are.

* Feature/react call mcp (#428)

Key Features

  - MCP Tool Integration: Added core MCP tool support with ToolClientSpec and ToolClient classes
  - API Enhancement: New mcp_tool method for flow-specific tool invocation
  - CLI Tooling: New tg-invoke-mcp-tool command for testing MCP integration
  - React Agent Enhancement: Fixed and improved multi-tool invocation capabilities
  - Tool Management: Enhanced CLI for tool configuration and management

Changes

  - Added MCP tool invocation to API with flow-specific integration
  - Implemented ToolClientSpec and ToolClient for tool call handling
  - Updated agent-manager-react to invoke MCP tools with configurable types
  - Enhanced CLI with new commands and improved help text
  - Added comprehensive documentation for new CLI commands
  - Improved tool configuration management

Testing

  - Added tg-invoke-mcp-tool CLI command for isolated MCP integration testing
  - Enhanced agent capability to invoke multiple tools simultaneously

* Test suite executed from CI pipeline (#433)

* Test strategy & test cases

* Unit tests

* Integration tests

* Extending test coverage (#434)

* Contract tests

* Testing embeedings

* Agent unit tests

* Knowledge pipeline tests

* Turn on contract tests

* Increase storage test coverage (#435)

* Fixing storage and adding tests

* PR pipeline only runs quick tests

* Empty configuration is returned as empty list, previously was not in response (#436)

* Update config util to take files as well as command-line text (#437)

* Updated CLI invocation and config model for tools and mcp (#438)

* Updated CLI invocation and config model for tools and mcp

* CLI anomalies

* Tweaked the MCP tool implementation for new model

* Update agent implementation to match the new model

* Fix agent tools, now all tested

* Fixed integration tests

* Fix MCP delete tool params

* Update Python deps to 1.2

* Update to enable knowledge extraction using the agent framework (#439)

* Implement KG extraction agent (kg-extract-agent)

* Using ReAct framework (agent-manager-react)
 
* ReAct manager had an issue when emitting JSON, which conflicts which ReAct manager's own JSON messages, so refactored ReAct manager to use traditional ReAct messages, non-JSON structure.
 
* Minor refactor to take the prompt template client out of prompt-template so it can be more readily used by other modules. kg-extract-agent uses this framework.

* Migrate from setup.py to pyproject.toml (#440)

* Converted setup.py to pyproject.toml

* Modern package infrastructure as recommended by py docs

* Install missing build deps (#441)

* Install missing build deps (#442)

* Implement logging strategy (#444)

* Logging strategy and convert all prints() to logging invocations

* Fix/startup failure (#445)

* Fix loggin startup problems

* Fix logging startup problems (#446)

* Fix logging startup problems (#447)

* Fixed Mistral OCR to use current API (#448)

* Fixed Mistral OCR to use current API

* Added PDF decoder tests

* Fix Mistral OCR ident to be standard pdf-decoder (#450)

* Fix Mistral OCR ident to be standard pdf-decoder

* Correct test

* Schema structure refactor (#451)

* Write schema refactor spec

* Implemented schema refactor spec

* Structure data mvp (#452)

* Structured data tech spec

* Architecture principles

* New schemas

* Updated schemas and specs

* Object extractor

* Add .coveragerc

* New tests

* Cassandra object storage

* Trying to object extraction working, issues exist

* Validate librarian collection (#453)

* Fix token chunker, broken API invocation (#454)

* Fix token chunker, broken API invocation (#455)

* Knowledge load utility CLI (#456)

* Knowledge loader

* More tests
2025-08-18 20:56:09 +01:00

4.6 KiB

Structured Data Pulsar Schema Changes

Overview

Based on the STRUCTURED_DATA.md specification, this document proposes the necessary Pulsar schema additions and modifications to support structured data capabilities in TrustGraph.

Required Schema Changes

1. Core Schema Enhancements

Enhanced Field Definition

The existing Field class in core/primitives.py needs additional properties:

class Field(Record):
    name = String()
    type = String()  # int, string, long, bool, float, double, timestamp
    size = Integer()
    primary = Boolean()
    description = String()
    # NEW FIELDS:
    required = Boolean()  # Whether field is required
    enum_values = Array(String())  # For enum type fields
    indexed = Boolean()  # Whether field should be indexed

2. New Knowledge Schemas

2.1 Structured Data Submission

New file: knowledge/structured.py

from pulsar.schema import Record, String, Bytes, Map
from ..core.metadata import Metadata

class StructuredDataSubmission(Record):
    metadata = Metadata()
    format = String()  # "json", "csv", "xml"
    schema_name = String()  # Reference to schema in config
    data = Bytes()  # Raw data to ingest
    options = Map(String())  # Format-specific options

3. New Service Schemas

3.1 NLP to Structured Query Service

New file: services/nlp_query.py

from pulsar.schema import Record, String, Array, Map, Integer, Double
from ..core.primitives import Error

class NLPToStructuredQueryRequest(Record):
    natural_language_query = String()
    max_results = Integer()
    context_hints = Map(String())  # Optional context for query generation

class NLPToStructuredQueryResponse(Record):
    error = Error()
    graphql_query = String()  # Generated GraphQL query
    variables = Map(String())  # GraphQL variables if any
    detected_schemas = Array(String())  # Which schemas the query targets
    confidence = Double()

3.2 Structured Query Service

New file: services/structured_query.py

from pulsar.schema import Record, String, Map, Array
from ..core.primitives import Error

class StructuredQueryRequest(Record):
    query = String()  # GraphQL query
    variables = Map(String())  # GraphQL variables
    operation_name = String()  # Optional operation name for multi-operation documents

class StructuredQueryResponse(Record):
    error = Error()
    data = String()  # JSON-encoded GraphQL response data
    errors = Array(String())  # GraphQL errors if any

2.2 Object Extraction Output

New file: knowledge/object.py

from pulsar.schema import Record, String, Map, Double
from ..core.metadata import Metadata

class ExtractedObject(Record):
    metadata = Metadata()
    schema_name = String()  # Which schema this object belongs to
    values = Map(String())  # Field name -> value
    confidence = Double()
    source_span = String()  # Text span where object was found

4. Enhanced Knowledge Schemas

4.1 Object Embeddings Enhancement

Update knowledge/embeddings.py to support structured object embeddings better:

class StructuredObjectEmbedding(Record):
    metadata = Metadata()
    vectors = Array(Array(Double()))
    schema_name = String()
    object_id = String()  # Primary key value
    field_embeddings = Map(Array(Double()))  # Per-field embeddings

Integration Points

Flow Integration

The schemas will be used by new flow modules:

  • trustgraph-flow/trustgraph/decoding/structured - Uses StructuredDataSubmission
  • trustgraph-flow/trustgraph/query/nlp_query/cassandra - Uses NLP query schemas
  • trustgraph-flow/trustgraph/query/objects/cassandra - Uses structured query schemas
  • trustgraph-flow/trustgraph/extract/object/row/ - Consumes Chunk, produces ExtractedObject
  • trustgraph-flow/trustgraph/storage/objects/cassandra - Uses Rows schema
  • trustgraph-flow/trustgraph/embeddings/object_embeddings/qdrant - Uses object embedding schemas

Implementation Notes

  1. Schema Versioning: Consider adding a version field to RowSchema for future migration support
  2. Type System: The Field.type should support all Cassandra native types
  3. Batch Operations: Most services should support both single and batch operations
  4. Error Handling: Consistent error reporting across all new services
  5. Backwards Compatibility: Existing schemas remain unchanged except for minor Field enhancements

Next Steps

  1. Implement schema files in the new structure
  2. Update existing services to recognize new schema types
  3. Implement flow modules that use these schemas
  4. Add gateway/rev-gateway endpoints for new services
  5. Create unit tests for schema validation