omnigraph/docs/user/cli-reference.md
aaltshuler 711865e6f1 docs(cluster,server): the Phase 5 mode switch; retire applied-not-serving caveats
The standing caveat ('applied means recorded in the cluster catalog —
nothing more; the server still boots from omnigraph.yaml') retires: cluster
docs gain the 'Serving from the cluster' section (exclusivity, applied-
revision serving, fail-fast readiness, restart-to-pick-up, expose-all
bridge), server.md gains mode-inference rule 0 and the cluster-booted multi
mode, deployment.md the boot-source choice, and the CLI's apply note plus
the cli-reference cluster row (stale back to Stage 3A) now describe the full
convergence surface. RFC-005 flips to Landed with four implementation
deviations recorded.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-06-10 17:56:54 +03:00

127 lines
7.5 KiB
Markdown

# CLI Reference (`omnigraph`)
A reference for the `omnigraph` binary's command surface and `omnigraph.yaml` schema. For a quick-start guide, see [cli.md](cli.md).
Top-level command families and subcommands. Graph-targeting commands accept either a positional `URI`, `--uri`, or a `--target <name>` resolved against `omnigraph.yaml`; `cluster` commands use `--config <dir>`.
## Top-level commands
| Command | Purpose |
|---|---|
| `init` | `--schema <pg>` → initialize a graph (also scaffolds `omnigraph.yaml` if missing) |
| `load` | bulk load a branch (`--mode overwrite\|append\|merge`) |
| `ingest` | branch-creating transactional load (`--from <base>`) |
| `query` (alias: `read`) | run named read query; source via `--query <path>`, `-e`/`--query-string <GQ>`, or `--alias <name>` (exactly one). `read` is the deprecated previous name and prints a one-line warning to stderr |
| `mutate` (alias: `change`) | run mutation query; same `--query` / `-e` / `--alias` mutual-exclusion as `query`. `change` is the deprecated previous name and prints a one-line warning to stderr |
| `snapshot` | print current snapshot (per-table version + row count) |
| `export` | dump to JSONL on stdout (`--type T`, `--table K` filters) |
| `branch create \| list \| delete \| merge` | branching ops |
| `commit list \| show` | inspect commit graph |
| `schema plan \| apply \| show (alias: get)` | migrations |
| `lint` (alias: `check`) | offline / graph-backed query validation. Replaces `query lint` / `query check`, which are kept as deprecated argv-level shims that print a one-line warning and rewrite to `omnigraph lint` |
| `cluster validate \| plan \| apply \| approve \| status \| refresh \| import \| force-unlock` | declarative cluster control plane. `validate` checks a local `cluster.yaml` folder and referenced schema/query/policy files; `plan` diffs it against local JSON state at `__cluster/state.json`, annotates dispositions, and embeds real schema-migration previews; `apply` converges the cluster — stored-query/policy catalog writes (content-addressed under `__cluster/resources/`), graph creates, schema updates (soft drops only; `--as` records the actor), and graph deletes behind a digest-bound approval from `cluster approve <resource> --as <actor>`; what apply converges is what an `omnigraph-server --cluster <dir>` deployment serves on its next restart (omnigraph.yaml deployments are unaffected); `status` reads the state ledger; `refresh`/`import` explicitly update local JSON state from read-only graph observations; `force-unlock <LOCK_ID>` manually removes a held local state lock by exact id |
| `optimize` | non-destructive Lance compaction (skips tables with `Blob` columns or uncovered drift; `--json` reports `skipped`) |
| `repair [--confirm] [--force]` | preview or explicitly publish uncovered manifest/head drift. `--confirm` heals verified maintenance drift and exits non-zero if suspicious/unverifiable drift is refused; `--force --confirm` publishes suspicious/unverifiable drift after operator review |
| `cleanup --keep N --older-than 7d --confirm` | destructive version GC |
| `embed` | offline JSONL embedding pipeline |
| `policy validate \| test \| explain` | Cedar tooling. Selects `cli.graph`, else `server.graph`, else top-level `policy.file` |
| `version` / `-v` | print `omnigraph 0.3.x` |
## `omnigraph.yaml` schema
```yaml
project: { name }
graphs:
<name>:
uri: <local|s3://|http(s)://>
bearer_token_env: <ENV_NAME>
queries: # per-graph stored-query registry (server-role; multi-graph mode)
<query-name>: # key MUST equal the `query <name>` symbol inside the .gq
file: <path-to-.gq> # relative to this config's directory
mcp:
expose: true # default true: listed in the MCP catalog (GET /queries); set false to hide (still HTTP-callable)
tool_name: <name> # optional MCP tool-name override (defaults to <query-name>;
# must be unique across exposed queries)
server:
graph: <name>
bind: <ip:port>
cli:
graph: <name>
branch: <name>
output_format: json|jsonl|csv|kv|table
table_max_column_width: 80
table_cell_layout: truncate|wrap
query:
roots: [<dir>, …] # search path for .gq files
auth:
env_file: ./.env.omni
aliases:
<alias>:
# accepted values: `read` / `query` (read alias), `change` / `mutate`
# (write alias). `query` and `mutate` are recommended; `read` and
# `change` remain accepted forever for back-compat.
command: read|change|query|mutate
query: <path-to-.gq>
name: <query-name>
args: [<positional-name>, …]
graph: <name>
branch: <name>
format: <output-format>
queries: # top-level registry — applies only to a bare-URI (anonymous) graph; a graph served by name uses its `graphs.<id>.queries`. Mirrors top-level `policy`.
<query-name>: { file: <path-to-.gq> } # mcp.expose defaults to true
policy:
file: ./policy.yaml
```
## Cluster config preview
```bash
omnigraph cluster validate --config ./company-brain
omnigraph cluster plan --config ./company-brain --json
omnigraph cluster apply --config ./company-brain --json
omnigraph cluster approve graph.<id> --config ./company-brain --as <actor>
omnigraph cluster status --config ./company-brain --json
omnigraph cluster refresh --config ./company-brain --json
omnigraph cluster import --config ./company-brain --json
omnigraph cluster force-unlock <LOCK_ID> --config ./company-brain --json
```
`--config` is a directory containing `cluster.yaml`; it defaults to `.`.
Stage 3A accepts graphs, schemas, stored queries, and policy bundle file
references. `cluster plan` reads local JSON state from
`<config-dir>/__cluster/state.json`; a missing file means empty state. Plan,
apply, refresh, and import acquire `__cluster/lock.json` by default and release
it before returning. `cluster apply` executes only stored-query/policy catalog
writes (content-addressed under `__cluster/resources/`) and requires an
existing `state.json`; graph/schema changes are deferred with warnings, and
applied resources do not serve traffic — the server still boots from
`omnigraph.yaml`. `cluster status` reads state only and reports any existing
lock metadata. `force-unlock` removes a lock only when the supplied id exactly
matches the lock file. `refresh` requires an existing `state.json`; `import`
creates one only when it is missing. Both observe declared graphs read-only at
`<config-dir>/graphs/<graph-id>.omni`. External state backends, graph/schema
apply, automatic stale-lock breaking, `plan --refresh`, pipelines, UI specs,
embeddings, aliases, and bindings are reserved for later stages. See
[cluster-config.md](cluster-config.md).
## Output formats (`query` command, alias: `read`)
- `json` — pretty-printed object with metadata + rows
- `jsonl` — one metadata line then one JSON object per row
- `csv` — RFC 4180-ish quoting
- `table` — fitted text table, honors `table_max_column_width` + `table_cell_layout`
- `kv` — grouped per-row key/value blocks
## Param resolution
Precedence (high to low): explicit `--params` / `--params-file`, alias positional args, `omnigraph.yaml` defaults. JS-safe-integer handling is built in (`is_js_safe_integer_i64`, `JS_MAX_SAFE_INTEGER_U64`) so 64-bit ids round-trip safely through JSON clients.
## Bearer token resolution (CLI)
1. `graphs.<name>.bearer_token_env`
2. `OMNIGRAPH_BEARER_TOKEN` global env
3. `auth.env_file` referenced `.env`
## Duration parsing (cleanup)
`s | m | h | d | w` units, e.g. `--older-than 7d`.