omnigraph/docs/user/maintenance.md
2026-05-15 03:45:22 +03:00

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# Maintenance: Optimize & Cleanup
`db/omnigraph/optimize.rs`.
## `optimize_all_tables(db)` — non-destructive
- Lance `compact_files()` on every node + edge table on `main`.
- Rewrites small fragments into fewer large ones; old fragments remain reachable via older manifests.
- Bounded by `OMNIGRAPH_MAINTENANCE_CONCURRENCY` (default 8).
- Returns `[TableOptimizeStats { table_key, fragments_removed, fragments_added, committed }]`.
## `cleanup_all_tables(db, options)` — destructive
- Lance `cleanup_old_versions()` per table.
- Removes manifests (and their unique fragments) older than the retention policy.
- `CleanupPolicyOptions { keep_versions: Option<u32>, older_than: Option<Duration> }` — at least one is required.
- Returns `[TableCleanupStats { table_key, bytes_removed, old_versions_removed }]`.
- CLI guards with `--confirm`; without it, prints a preview line.
- **Recovery floor:** `--keep < 3` may garbage-collect Lance versions that the open-time recovery sweep needs as a rollback target (the sweep restores to the branch's manifest-pinned table version, which is HEAD-1 in the typical Phase B → Phase C drift case). Default `--keep 10` is safe.
## Tombstones
Logical sub-table delete markers in `__manifest`; `tombstone_object_id(table_key, version)` excludes a sub-table version from snapshot reconstruction.
## Internal schema migrations (`db/manifest/migrations.rs`)
Version evolutions of the on-disk `__manifest` shape are reconciled automatically on the first write under a new binary. `INTERNAL_MANIFEST_SCHEMA_VERSION` declares the shape the binary expects; the on-disk stamp `omnigraph:internal_schema_version` (Lance schema-level metadata) records the on-disk shape. The publisher's open-for-write path calls `migrate_internal_schema` before reading state; reads are side-effect-free. No operator action is required for in-place upgrades. See [storage.md → Internal schema versioning](storage.md) for the full mechanism.
A binary opening a manifest stamped at a version *higher* than it knows about refuses to publish with a clear "upgrade omnigraph first" error — old binaries cannot clobber a newer schema.