* test(optimize): cover manifest publish + HEAD-drift reconcile Red against the pre-fix optimize, which ran compact_files without publishing the compacted version to __manifest: - maintenance: optimize must publish so the manifest table_version tracks the compacted Lance HEAD and a later schema apply succeeds; and must reconcile a pre-existing manifest-behind-HEAD drift (forged via raw Lance compaction) so strict writes commit again. - end_to_end + composite_flow: post-optimize query / strict update / reopen in the full lifecycle (the canonical flow previously omitted post-optimize writes as a documented "known limitation"). - failpoints: a crash between compaction and the manifest publish rolls forward on next open. * fix(optimize): publish compaction to manifest and reconcile HEAD drift optimize ran Lance compact_files without publishing the new version to __manifest, so the manifest table_version lagged the Lance HEAD: reads stayed pinned to the pre-compaction version, and the next schema apply or strict update/delete failed its HEAD-vs-manifest precondition with "stale view ... refresh and retry" (open-time recovery rollback inflated the gap on retry). optimize now publishes each compacted table's version under the per-(table, main) write queue, guarded by a manifest CAS and a SidecarKind::Optimize recovery sidecar (loose-match; roll-forward is safe because compaction is content-preserving). When a table has nothing left to compact but its Lance HEAD is already ahead of the manifest pin (pre-fix drift, or a recovery restore commit), optimize reconciles the manifest forward to HEAD (metadata-only, no sidecar). Caches and the CSR/CSC graph index are invalidated after a publish. Docs updated (maintenance, storage, branches-commits, writes, testing). * test(recovery): rollback convergence + optimize-defer regressions Red against the current code, landed before the fix: - recovery: after the open-time sweep rolls a sidecar back, the manifest must track Lance HEAD (no residual drift) so a follow-up schema apply succeeds — the original "+1 per retry" loop. Today roll-back restores without publishing, so the manifest lags HEAD and the apply fails its HEAD-vs-manifest precondition. - maintenance: optimize must refuse while a recovery sidecar is pending — operating on an unrecovered graph could publish a partial write the sweep would roll back. Also removes optimize_reconciles_preexisting_manifest_head_drift: the ad-hoc drift reconcile it covered is replaced by recovery-side convergence. * fix(recovery): converge manifest on roll-back; optimize defers on pending recovery Root of PR #141's review findings and the original "+1 per retry" loop: a Lance HEAD ahead of the manifest was ambiguous (benign content-preserving drift vs. a partial write a sidecar will roll back), and optimize's reconcile guessed it benign. Close the class instead of guessing: - Recovery roll-back now PUBLISHES the restored version (via a push_table_update_at_head helper shared with roll-forward), so the manifest tracks the Lance HEAD after recovery — symmetric with roll-forward. This fixes the +1 loop (after one roll-back the retry's HEAD-vs-manifest precondition passes) and removes the only remaining source of orphaned drift. The audit still records the logical rolled-back-to version; the manifest is published at the restore commit (identical content). - optimize drops the ad-hoc drift reconcile and instead REFUSES when a __recovery sidecar is pending, so it only ever operates on a recovered graph (manifest == HEAD); its compaction publish can no longer commit a partial write. With the reconcile gone, the blob-skip-vs-reconcile gap is moot. Updates the rollback recovery-test helper (manifest == HEAD after roll-back), the failpoints assertions, and the user/dev docs. * test(recovery): fix rollback assertion for manifest convergence The roll-back-publishes change makes the manifest version advance after a SchemaApply roll-back (to the old-schema content), so the schema_apply_without_schema_staging_rolls_back_on_next_open assertion must be `version > pre`, not `version == pre`. This update was dropped during the commit churn and surfaced as a CI Test Workspace failure; the old-schema-preserved intent stays covered by count_rows + _schema.pg + the RolledBack convergence invariant.
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Branches, Commits, Snapshots
L1 — Lance per-dataset branches
Lance supports branching at the dataset level: a branch is a named lineage of versions, and fork_branch_from_state(source_branch, target_branch, source_version) creates a copy-on-write fork.
L2 — Graph-level branches
OmniGraph builds graph branches on top by branching every sub-table coherently:
branch_create(name)/branch_create_from(target, name)— disallowed namemain; fails if branch exists; ensures the schema-apply lock is idle. Atomic and authority-first likebranch_delete: it flips the__manifestbranch (authority), then creates the derived commit-graph branch, force-dropping any orphaned commit-graph ref left by an incomplete prior delete (the manifest branch is fresh, so a same-named commit-graph branch is provably a zombie). If commit-graph creation fails, the manifest branch is rolled back so the name never half-exists.branch_list()— returns public branches, filters the internal__schema_apply_lock__branch.branch_delete(name)— refuses if there are descendants on the branch, or if it is the current branch. The manifest is the single authority for branch existence: deletion flips the__manifestbranch ref first (one atomic op), after which the branch is gone from every snapshot. The owned per-table forks and the commit-graph branch are derived state, reclaimed best-effort withforce_delete_branchafter the flip. A failure during that reclaim (transient object-store error) does not fail the call or block the authority flip; the leftover forks are unreachable orphans that thecleanupreconciler converges. One consequence: if a delete's best-effort reclaim fails, reusing that branch name before the nextcleanupsurfaces a clear error pointing atcleanup(the stale fork would otherwise collide on first write).- Lazy forking: a branch only forks a sub-table when that sub-table is first mutated on it. Pure-read branches share fragments with their source. A fork collision is classified by the manifest authority, not by Lance branch versions: if the live manifest already records the fork on the active branch, a concurrent first-write won and the caller gets a retryable "refresh and retry"; if the manifest does not, a physical branch there is an orphan and the caller is pointed at
cleanup. sync_branch(branch)— re-binds the in-memory handle to the latest head of the branch.
L2 — Commit graph (db/commit_graph.rs)
In-memory shape of a graph commit:
GraphCommit {
graph_commit_id: ULID,
manifest_branch: Option<String>,
manifest_version: u64,
parent_commit_id: Option<String>,
merged_parent_commit_id: Option<String>, // populated for merge commits
actor_id: Option<String>, // joined in-memory from _graph_commit_actors.lance, NOT a column on _graph_commits.lance
created_at: i64 (microseconds since epoch),
}
Storage is split across two Lance datasets (both with stable row IDs):
_graph_commits.lance— every column above exceptactor_id._graph_commit_actors.lance— optional separate(graph_commit_id, actor_id)map, created on demand. Theactor_idfield above is populated by joining this dataset in-memory at load time.
Notes:
- Every successful publish (load / change / merge / schema_apply) appends one commit.
- Merge commits have two parents; linear commits have one.
- API:
list_commits(branch),get_commit(id),head_commit_id_for_branch(branch).
L2 — Snapshots & time travel
snapshot()— current snapshot for the bound branch; cached.snapshot_of(target)— snapshot at aReadTarget(branch | snapshot id).snapshot_at_version(v: u64)— historical snapshot from any manifest version.entity_at(table_key, id, version)— single-entity time travel without building a full snapshot.- A
Snapshotis a(version, HashMap<table_key, SubTableEntry>)— cheap to build, snapshot-isolated cross-table reads.
L2 — Internal system branches
Internal or legacy branch refs:
__schema_apply_lock__— serializes schema migrations; filtered frombranch_list()but visible to internals.__run__<run-id>— legacy from the pre-v0.4.0 Run state machine (removed in MR-771). These are swept off__manifeston the first read-write open by the v2→v3 internal-schema migration (MR-770), and__run__*is no longer a reserved name. Known limitation: a pre-v0.4.0 graph opened read-only still surfaces any stale__run__*branch inbranch_list()until its first read-write open (the migration is write-path-only, like all manifest migrations).
L2 — Recovery audit trail
The five migrated writers (MutationStaging::finalize, schema_apply, branch_merge, ensure_indices, optimize_all_tables) protect their multi-table commits with a sidecar at __recovery/{ulid}.json written before Phase B and deleted after Phase C. The next Omnigraph::open (gated on OpenMode::ReadWrite) runs the recovery sweep in crates/omnigraph/src/db/manifest/recovery.rs: classify per-table state, decide all-or-nothing per sidecar, roll forward / back, record an audit row.
Audit rows live in _graph_commit_recoveries.lance (sibling to _graph_commits.lance) and reference the commit graph by graph_commit_id. The linked recovery commit is identified by that same graph_commit_id, and actor_id="omnigraph:recovery" is stored in _graph_commit_actors.lance (joined by graph_commit_id) — _graph_commits.lance itself does not carry the actor_id column. To find recoveries for a specific original actor: omnigraph commit list --filter actor=omnigraph:recovery, then join to _graph_commit_recoveries.lance by graph_commit_id to read recovery_for_actor. Schema: see crates/omnigraph/src/db/recovery_audit.rs.