Refresh user-facing and agent-facing docs for the staged-write rewire and clean up stale Run-state-machine references that survived MR-771. MR-794-specific updates: * docs/runs.md — remove "Known limitation: mid-query partial failure" section; document the in-memory accumulator + D₂ rule + the LoadMode::Overwrite residual. * docs/invariants.md §VI.25 — flip from aspirational/open to upheld for inserts/updates. Within-query read-your-writes is now load-bearing for the publisher CAS contract. * docs/architecture.md — add "Mutation atomicity — in-memory accumulator (MR-794)" subsection with per-op flow; refresh the engine + state diagrams to drop RunRegistry and add MutationStaging. * docs/execution.md — rewrite the mutation flow sequence diagram for the staged-write path; updated the LoadMode table to call out per-mode commit semantics; rewrote load vs ingest. * docs/query-language.md — document the D₂ parse-time rule. * docs/errors.md — add the D₂ BadRequest rejection path. * docs/testing.md — extend the runs.rs row to cover the new MR-794 contract tests; add the staged_writes.rs row. * docs/releases/v0.4.1.md (new) — release note covering the rewire, test additions, residuals, and files changed. * AGENTS.md (CLAUDE.md symlink) — update the atomic-per-query description and the L2 capability matrix row. Stale-reference cleanup (MR-771 leftovers): * docs/storage.md — drop live _graph_runs.lance / _graph_run_actors.lance from the layout diagram and prose; mark legacy. * docs/branches-commits.md — move __run__<id> to a legacy note; remove publish_run from the publish-trigger list. * docs/audit.md — refresh _as API list (drop begin_run_as / publish_run_as); legacy RunRecord.actor_id moved to a historical note. * docs/constants.md — mark run registry / branch-prefix rows as legacy. * docs/cli.md — replace the legacy omnigraph run * quickstart block with omnigraph commit list/show. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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Query Language (.gq)
Pest grammar at crates/omnigraph-compiler/src/query/query.pest. AST in query/ast.rs. Type checker in query/typecheck.rs. Lowering in ir/lower.rs.
Query declarations
query <name>($p1: T1, $p2: T2?, …)
@description("…") @instruction("…") {
…
}
Two body shapes:
- Read:
match { … } return { … } [order { … }] [limit N] - Mutation: one or more of
insert | update | deletestatements
Param types reuse all schema scalars; trailing ? makes a param optional. The compiler reserves $__nanograph_now for now().
MATCH clauses
- Binding:
$x: NodeType { prop: <literal | $param | now()>, … } - Traversal:
$src EDGE_NAME { min, max? } $dst— variable-length paths via hop bounds; default 1..1 if bounds omitted. - Filter:
<expr> <op> <expr>with operators>=,<=,!=,>,<,=, and stringcontains. - Negation:
not { clause+ }— desugars to anti-join over the inner pipeline.
Search clauses (multi-modal)
Used inside MATCH or as expressions inside RETURN/ORDER:
| Function | Purpose | Underlying Lance facility |
|---|---|---|
nearest($x.vec, $q) |
k-NN vector search (cosine) | Lance vector index (IVF / HNSW) |
search(field, q) |
Generic FTS | Inverted index |
fuzzy(field, q [, max_edits]) |
Levenshtein-tolerant text search | Inverted index |
match_text(field, q) |
Pattern match | Inverted index |
bm25(field, q) |
BM25 scoring | Inverted index |
rrf(rank_a, rank_b [, k]) |
Reciprocal Rank Fusion of two rankings (default k=60) | OmniGraph fuses scored rankings |
nearest() requires a LIMIT; the compiler resolves the query vector via the param map (or via the runtime embedding client when bound to a text input).
RETURN clause
return { <expr> [as <alias>], … } with expressions:
- Variable / property access:
$x,$x.prop - Literals: string, int, float, bool, list
now()- Aggregates:
count,sum,avg,min,max - All search functions above (so you can return a score column)
AliasRef— re-use a previous projection alias
ORDER & LIMIT
order { <expr> [asc|desc], … }— supports plain expressions andnearest(...).limit <integer>— required when there is anearest(...)ordering.
Mutation statements
insert <Type> { prop: <value>, … }update <Type> set { prop: <value>, … } where <prop> <op> <value>delete <Type> where <prop> <op> <value>
<value> is a literal, $param, or now(). Multi-statement mutations execute atomically (added in v0.2.0).
D₂ — mixed insert/update + delete is rejected at parse time
A single mutation query must be either insert/update-only or delete-only. Mixed → rejected before any I/O with the message:
mutation '<name>' on the same query mixes inserts/updates and deletes; split into separate mutations: (1) inserts and updates, then (2) deletes. This restriction lifts when Lance exposes a two-phase delete API (tracked: MR-793 / Lance-upstream).
Reason: under the staged-write rewire (MR-794), inserts and updates accumulate in memory and commit at end-of-query, while deletes still inline-commit (Lance 4.0.0 has no public two-phase delete). Mixing creates ordering hazards (same-row insert→delete becomes a no-op because the staged insert isn't visible to delete; cascading deletes of just-inserted edges break referential integrity by silent design). Until Lance exposes DeleteJob::execute_uncommitted, the parse-time rejection keeps both paths atomic and correct. See docs/runs.md and docs/invariants.md §VI.25.
IR (Intermediate Representation)
QueryIR { name, params, pipeline: Vec<IROp>, return_exprs, order_by, limit }
Pipeline operations:
NodeScan { variable, type_name, filters }Expand { src_var, dst_var, edge_type, direction (Out|In), dst_type, min_hops, max_hops, dst_filters }— destination filters are pushed into the expand so Lance scalar pushdown can prune.Filter { left, op, right }AntiJoin { outer_var, inner: Vec<IROp> }— fornot { … }
Lowering:
- Partition MATCH clauses (bindings, traversals, filters, negations).
- Identify "deferred" bindings (a destination of a traversal that has filters) so the Expand can carry the filter as a pushdown.
- Emit NodeScan for the first binding, then Expand operations, then remaining Filter operations, then AntiJoins for negations.
- Translate RETURN / ORDER expressions; preserve LIMIT.
Linting & validation (query/lint.rs)
Codes seen so far:
- Q000 (Error): parse error
- L201 (Warning): nullable property never set by any UPDATE — "{type}.{prop} exists in schema but no update query sets it"
- (Warning): mutation declares no params — hardcoded mutations are easy to miss
- Plus all type errors from
typecheck_query_decl()(undefined types, mismatched operators, undefined edges, etc.)
Output:
QueryLintOutput { status, schema_source, query_path,
queries_processed, errors, warnings, infos,
results: [{ name, kind, status, error?, warnings[] }],
findings: [{ severity, code, message, type_name?, property?, query_names[] }] }
CLI exits non-zero only on status = Error.