omnigraph/docs/dev/lance.md
Ragnor Comerford 0dcdcf5a9d
feat(engine): Stage the delete path; retire the inline-delete residual (#308)
* test(engine): pin zero-row cascade delete must not drift an edge table (red)

A delete <Node> cascades a delete_where into every incident edge type. The
inline delete_where (Dataset::delete) advances Lance HEAD even when zero edges
match, but the cascade records the new version only if deleted_rows > 0 — so a
node with no incident edges leaves edge:Knows HEAD>manifest drift, which trips
the next strict write's ExpectedVersionMismatch and repair refuses it.

Red today: edge:Knows manifest=v5, Lance HEAD=v6. Goes green when delete moves
to the staged two-phase path (iss-950, Lance 7.0 DeleteBuilder::execute_uncommitted),
where a 0-row delete commits no Lance version and the deleted_rows>0 gate becomes
correct by construction.

* fix(engine): a zero-row delete must not advance Lance HEAD

Lance's Dataset::delete commits a new version even when the predicate matches
nothing (build_transaction always emits Operation::Delete), so a node delete
that cascades a delete_where into an incident edge type with no matching edges
advanced that edge table's Lance HEAD while the cascade skipped record_inline
(gated on deleted_rows > 0) — leaving HEAD>manifest drift that wedged the next
strict write and that repair refused as suspicious/unverifiable.

Use Lance 7.0's two-phase DeleteBuilder::execute_uncommitted to read
num_deleted_rows before committing: a no-match delete now advances nothing (no
version, no drift) and the existing deleted_rows>0 gate is correct by
construction. Non-zero deletes commit the staged transaction with
skip_auto_cleanup + affected_rows (parity with the prior inline path).

First step of the staged-delete migration (iss-950); turns the
node_delete_with_no_incident_edges_leaves_no_edge_table_drift regression green.

* feat(engine): stage_delete two-phase primitive (MR-A step 0)

Add TableStore::stage_delete (Lance 7.0 DeleteBuilder::execute_uncommitted),
the two-phase analogue of stage_merge_insert: writes deletion files without
advancing Lance HEAD, returns Option<StagedWrite> (None on 0 rows = true no-op),
carrying the deletion-vector updated_fragments as new_fragments and the
superseded originals as removed_fragment_ids so combine_committed_with_staged
makes the deletion visible to in-query reads.

No affected_rows is threaded: like stage_merge_insert's Operation::Update commit,
the staged delete relies on OmniGraph's per-table write queue + manifest CAS, not
Lance's per-dataset conflict resolver (commit_staged is a single attempt).

Flip the two residual guards to the staged path: staged_writes.rs now asserts
stage_delete does NOT advance HEAD and that a staged delete is read-your-writes
visible (the deletion-vector RYW proof D2 retirement depends on); the
lance_surface_guards delete guard pins execute_uncommitted's UncommittedDelete.

No behavior change yet (callers still use delete_where); Step 1 wires them.

* feat(engine): TableStorage::stage_delete + migrate merge delete path (MR-A step 1a)

Add stage_delete/Option<StagedHandle> to the TableStorage trait (delegates to
TableStore::stage_delete). Migrate the two branch_merge delete sites
(three-way RewriteMerged + adopt delta) from the inline delete_where residual to
stage_delete + commit_staged — identical in shape to the stage_merge_insert +
commit_staged pair above each. HEAD still advances within the merge sequence
(via commit_staged), under the unchanged SidecarKind::BranchMerge Phase-B
confirmation; the _pre_delete/_pre_index failpoints fire by position, unchanged.

merge_truth_table, branching, composite_flow green.

* feat(engine): migrate all delete sites to staged path, retire inline delete (MR-A step 1b/1c)

Routes every delete through the staged write path so delete never advances
Lance HEAD inline — the last inline-commit residual on the mutation path is
gone. `MutationStaging` now accumulates delete predicates (`record_delete`)
alongside pending write batches; at end-of-query `stage_all` combines a
table's predicates into one `(p1) OR (p2) …` `stage_delete` (a deletion-vector
transaction, no HEAD advance) and `commit_all` commits it through the same
`commit_staged` path as inserts/updates. Deletes are now ordinary staged
entries: one sidecar pin at `expected + 1`, no inline special-casing.

Migrated callers (all 5): the 3 mutation.rs sites (delete-node, cascade,
delete-edge) and the 2 merge.rs sites (already on stage_delete in step 1a).
`affected_edges`/`affected` move from post-inline-commit `deleted_rows` to a
committed `count_rows` at record time — exact under D₂, bounded by the cascade
working set. A predicate matching zero rows stages nothing (the staged
equivalent of the old "skip record_inline on 0 deleted rows"), so the zero-row
edge-table drift class stays closed by construction.

Retired scaffolding now that no caller remains:
- `MutationStaging.inline_committed` + `record_inline` → `delete_predicates` +
  `record_delete`; `StagedMutation.inline_committed`/`paths` fields and all the
  `commit_all` inline handling (queue keys, sidecar pins with the
  `record_inline` table_version special-case, the inline recheck loop).
- `open_table_for_mutation`'s post-inline-commit reopen branch (deletes no
  longer advance HEAD mid-query, so a second touch reopens at the pinned
  version like any write).
- `InlineCommitResidual::delete_where` + its `TableStore` impl, the orphaned
  `TableStore::delete_where`, and `DeleteState`. `InlineCommitResidual` now
  carries only `create_vector_index` (Lance #6666 still open).

D₂ stays for now: staged-delete read-your-writes doesn't yet compose into the
pending accumulator (insert-then-delete on one table), so mixed
insert/update/delete in one query is still rejected at parse time. Retiring D₂
is step 2. Doc comments updated to match across exec/, storage_layer, db/.

Tests (all green): writes, consistency, validators, end_to_end, composite_flow,
merge_truth_table, maintenance, recovery, staged_writes, forbidden_apis,
lance_surface_guards, changes, point_in_time (286), plus failpoints (63).

* docs: delete is a staged write, not an inline-commit residual (MR-A step 1)

Update the docs that described `delete` as the inline-commit residual now that
MR-A routes it through `stage_delete`. Always-loaded surfaces (AGENTS.md rule
4 / capability matrix, invariants.md Invariant 4 / truth matrix / known gaps)
plus the dev write-path docs (writes.md, execution.md incl. its mutation
sequence diagram, architecture.md) now state: deletes accumulate as predicates
and stage like inserts/updates, no inline HEAD advance; `InlineCommitResidual`
carries only `create_vector_index` (Lance #6666). The parse-time D₂ rule is
documented as retained — not because delete inline-commits, but because
staged-delete read-your-writes is not yet wired into the pending accumulator
(MR-A step 2). lance.md's 7.0 audit note marked MR-A as landed.

* docs: D₂ is a deliberate boundary, not temporary scaffolding (MR-A close-out)

After MR-A staged the delete path, D₂ (a mutation query is insert/update-only
OR delete-only) was left framed as temporary — "until Lance ships two-phase
delete" / "retire in step 2". Lance shipped that and we used it for the
inline-commit fix; D₂'s original justification is gone. It now stands for a
different, permanent reason: keeping a query to one kind keeps its
read-your-writes unambiguous and each table to one version per query. Retiring
it would buy single-commit mixed atomicity (cheap workaround: split, or a
branch) at the cost of an in-query delete view, pending pruning, edge
id-resolution, and two-commit-per-table ordering in the hot mutation path —
complexity not worth earning. Decision: keep D₂ as a deliberate boundary.

Reframes the now-stale wording everywhere, no logic change:
- The D₂ parse-time error message no longer promises "this restriction lifts
  when Lance exposes a two-phase delete API"; it states the boundary and points
  to a branch+merge for one atomic commit.
- `enforce_no_mixed_destructive_constructive` doc, AGENTS.md, invariants.md
  (Invariant 4 / truth matrix / removed from the known-gaps), writes.md,
  architecture.md, lance.md, and the user mutations doc (which wrongly said
  deletes "commit through a different path" — both stage now).
- Swept remaining stale `delete_where` mentions left from the Step-1 migration:
  the merge.rs "swap when upstream ships" comments (already swapped), the
  forbidden_apis / table_ops residual notes, the staged_writes vector-index
  guard doc (was "same as stage_delete's absence" — stage_delete now exists),
  and test comments/assert messages in recovery/maintenance/writes/failpoints.
  Genuinely-historical records (dated Lance audit, rfc-013, bug-case-fix) left.

Verified: engine builds warning-free; check-agents-md OK; writes/maintenance/
recovery/staged_writes/forbidden_apis all green. Closes MR-A.

* test(engine): overlapping delete predicates must not double-count affected_* (red)

Reproduces a reporting regression from the staged-delete migration flagged in
PR #308 review. Because deletes now stage (instead of inline-committing), two
delete statements in one query both scan the same unchanged committed snapshot;
counting each predicate independently over-reports `affected_*` when they
overlap. The old inline path committed each delete before the next ran, so it
counted distinct.

`delete Person where name = "Alice"` then `delete Person where age > 29` over
the standard fixture (Alice 30, Charlie 35) removes 2 distinct nodes and 3
distinct edges, but the buggy per-statement counting returns 3 nodes / 6 edges.
RED at this commit (asserts left=3, right=2).

* fix(engine): dedup overlapping delete predicates when counting affected_*

Count each delete statement against the committed snapshot MINUS the predicates
a prior delete statement on the same table already recorded:
`(pred) AND NOT ((prior1) OR (prior2) …)`. Summed over statements this is
inclusion-exclusion — `Σ |pₙ \ (p₁ ∪ …)| = |p₁ ∪ p₂ ∪ …|` — exactly the distinct
count the combined `(p1) OR (p2)` staged delete removes. Works for nodes and
edges alike with no edge identity needed; the node ID scan uses the same
exclusion so a later statement also doesn't re-cascade already-deleted nodes.
The ORIGINAL predicate is still what gets recorded (the staged delete removes
the union); only the count uses the exclusion. The common single-delete path is
unchanged (`prior` empty → filter is just the base predicate).

New helper `dedup_delete_filter` + `MutationStaging::recorded_delete_predicates`.
Turns the red regression test green (2 nodes / 3 edges); writes (33),
end_to_end, validators, maintenance, recovery, composite_flow, merge_truth_table,
consistency, changes, and failpoints (63) all stay green.

* test(engine): delete dedup must not drop NULL-column rows (red)

Follow-up to the overlapping-delete fix flagged in PR #308 review (Greptile P1):
the `(base) AND NOT (prior)` exclusion breaks under SQL three-valued logic. If a
prior delete predicate references a NULLable column, a later statement's
matching row whose column is NULL makes `prior` evaluate to UNKNOWN, `NOT
UNKNOWN` is UNKNOWN, and the row is filtered out of the scan — even though the
prior delete never matched it. That drops it from `deleted_ids`, skipping its
cascade (orphaned edges) or, if it is the only match, leaving the node
undeleted. A data bug, not just a miscount.

Data: Charlie(age 35), Zoe(age NULL); Knows Zoe→Charlie. `delete Person where
age > 30` then `delete Person where name = "Zoe"`. Under the buggy `NOT`, Zoe's
scan `(name='Zoe') AND NOT (age>30)` is UNKNOWN → Zoe survives. RED at this
commit (Person count left=1, right=0).

* fix(engine): NULL-safe delete dedup — exclude only definitely-matched prior rows

Change `dedup_delete_filter` from `(base) AND NOT (prior)` to
`(base) AND ((prior) IS NOT TRUE)`. `IS NOT TRUE` keeps both FALSE and UNKNOWN
rows, so a prior predicate that evaluates to SQL UNKNOWN (a NULL in a referenced
column) no longer drops a row this statement legitimately matches — only rows a
prior predicate matched as definitely TRUE are excluded from the count/scan. The
distinct-count semantics are unchanged for non-NULL data.

Turns the red NULL-dedup test green (Zoe deleted, her edge cascaded), and the
overlapping-dedup + writes/end_to_end/validators/maintenance/recovery/
composite_flow/consistency suites stay green.

* docs(engine): note dedup_delete_filter's load-bearing dependency on D₂

Self-review follow-up: the overlapping-delete dedup assumes the committed
snapshot is invariant across a query's statements, which holds only because D₂
forbids mixing writes with deletes (so a delete-touched table has no pending
writes). Make that dependency explicit at the function so a future D₂ relaxation
is forced to revisit the dedup. Comment-only.

* Preserve staged write commit metadata
2026-06-27 16:48:41 +02:00

24 KiB
Raw Blame History

Lance Docs Index (for OmniGraph agents)

OmniGraph sits on top of Lance. Many problems — index lifecycle, branching, transactions, fragments, compaction, vector/FTS internals — are answered upstream in Lance's docs, not in this codebase.

This file is the curated entry point. When you hit a Lance-shaped problem, find the matching topic below and fetch the listed URL(s) before guessing. Don't grep our codebase for behavior that is documented authoritatively in Lance.

Base URL: https://lance.org. Fetch the FULL page content, not summaries — use curl -sL <url> | pandoc -f html -t markdown or paste the rendered page text manually. Tools that summarize pages (like Claude's WebFetch) routinely drop load-bearing details — defaults, pub(crate) blockers, sub-specs hidden behind navigation hubs. Never act on a summarized fetch alone. Keep this index curated to relevant material — the upstream sitemap has hundreds of URLs (notably the Namespace REST API model surface, Spark/Trino/Databricks integrations) that we don't use.

Substrate boundary check. Before fetching, recall docs/dev/invariants.md: if Lance already does the thing, we don't reimplement it. The most common reason to read these docs is to confirm a substrate behavior, not to learn what to clone.

Quick-start (read these once per project)

Read when URL
Onboarding to Lance — concepts in 10 min https://lance.org/quickstart/
Onboarding to vector search https://lance.org/quickstart/vector-search/
Onboarding to full-text search https://lance.org/quickstart/full-text-search/
Onboarding to versioning / time travel https://lance.org/quickstart/versioning/
Lance's own AGENTS.md (its agent guide) https://lance.org/format/AGENTS/

By problem domain

Storage format & file layout

Touching db/manifest, fragment lifecycle, dataset reconstruction, or anything that reads/writes raw Lance state.

Topic URL
Lance file format overview https://lance.org/format/
File-level format spec https://lance.org/format/file/
File encoding https://lance.org/format/file/encoding/
File-level versioning https://lance.org/format/file/versioning/
Table layout (fragments, manifest) https://lance.org/format/table/layout/
Table schema metadata https://lance.org/format/table/schema/
Table-level versioning https://lance.org/format/table/versioning/
Transactions (commit semantics, conflict types) https://lance.org/format/table/transaction/
MemWAL (durability story) https://lance.org/format/table/mem_wal/
Row-ID lineage (stable row IDs) https://lance.org/format/table/row_id_lineage/
Branches & tags (Lance native) https://lance.org/format/table/branch_tag/

Branching / tags / time travel

Touching graph-level branches, snapshots, run isolation, the commit graph.

Topic URL
Branch & tag format https://lance.org/format/table/branch_tag/
Tags & branches operational guide https://lance.org/guide/tags_and_branches/
Versioning quick-start https://lance.org/quickstart/versioning/
Table-level versioning spec https://lance.org/format/table/versioning/

Indexes

Adding/changing index types, fixing coverage, debugging FTS or vector recall, designing the reconciler.

Topic URL
Index spec overview https://lance.org/format/index/
BTREE scalar index https://lance.org/format/index/scalar/btree/
Bitmap scalar index https://lance.org/format/index/scalar/bitmap/
Bloom-filter scalar index https://lance.org/format/index/scalar/bloom_filter/
Label-list scalar index https://lance.org/format/index/scalar/label_list/
Zone-map scalar index https://lance.org/format/index/scalar/zonemap/
R-Tree scalar index (spatial) https://lance.org/format/index/scalar/rtree/
Full-text search (FTS) index https://lance.org/format/index/scalar/fts/
N-gram scalar index https://lance.org/format/index/scalar/ngram/
Vector index https://lance.org/format/index/vector/
Fragment-reuse system index https://lance.org/format/index/system/frag_reuse/
MemWAL system index https://lance.org/format/index/system/mem_wal/
HNSW Rust example https://lance.org/examples/rust/hnsw/
Distributed indexing https://lance.org/guide/distributed_indexing/
Tokenizer (FTS, n-gram) https://lance.org/guide/tokenizer/

Reads & writes

Touching the bulk loader, mutation execution, merge_insert, WriteMode selection.

Topic URL
Read-and-write guide https://lance.org/guide/read_and_write/
Distributed write https://lance.org/guide/distributed_write/
Rust example: write & read a dataset https://lance.org/examples/rust/write_read_dataset/

Schema evolution

Touching apply_schema, the migration planner, additive evolution.

Topic URL
Data-evolution guide https://lance.org/guide/data_evolution/
Migration guide https://lance.org/guide/migration/

Object store / S3

Touching storage.rs, S3-compatible backends (RustFS, MinIO), env vars.

Topic URL
Object-store guide https://lance.org/guide/object_store/

Data types

Touching schema-language scalar mappings, blob columns, JSON, list columns.

Topic URL
Data types overview https://lance.org/guide/data_types/
Arrays / list types https://lance.org/guide/arrays/
Blobs (LargeBinary) https://lance.org/guide/blob/
JSON https://lance.org/guide/json/

Performance & tuning

Optimizing scans, fragment counts, cache behavior, memory pool sizing.

Topic URL
Performance guide https://lance.org/guide/performance/

Compaction & cleanup

Touching omnigraph optimize / cleanup, the underlying compact_files / cleanup_old_versions.

Topic URL
Read-and-write guide (covers compact_files, cleanup_old_versions) https://lance.org/guide/read_and_write/
Performance (compaction tradeoffs) https://lance.org/guide/performance/
Fragment-reuse index https://lance.org/format/index/system/frag_reuse/

DataFusion integration

The runtime substrate that may carry our query execution. See docs/dev/invariants.md: we don't rebuild relational machinery.

Topic URL
DataFusion integration https://lance.org/integrations/datafusion/

SDK reference

Looking up a specific Rust API (signature, return type, error variant).

Topic URL
SDK docs landing https://lance.org/sdk_docs/

What's not in this index (and why)

  • Namespace REST API model surface (/format/namespace/client/operations/models/...) — hundreds of REST schema docs for the Lance Namespace catalog API. Omnigraph does not run a Lance Namespace server, so these are not reachable from our problem space.
  • Spark / Trino / Databricks / Dataproc / Hive / Glue / Polaris / Iceberg / Unity / OneLake / Gravitino integrations — not part of OmniGraph's deployment surface.
  • Python / TF / PyTorch / Hugging Face / Ray integrations — OmniGraph is Rust-only; Python notebooks aren't relevant.
  • Community / governance / release / voting / PMC pages — meta, not technical.

If a future need pulls one of these into scope, add a row to the matching domain section above and link it from AGENTS.md's topic index.

Maintenance

When Lance ships a major release that changes any of the above (file format bump, new index type, transaction semantics change, new branching primitive), refresh this index in the same change as the omnigraph upgrade. Stale Lance pointers are worse than no pointers.

Last alignment audit: 2026-06-15 (Lance 7.0.0 upstream; omnigraph pinned at 7.0.0)

Migration from Lance 6.0.1 → 7.0.0 landed in this cycle. Arrow stayed 58, DataFusion stayed 53 (no change) — the only transitive bump is object_store 0.12.5 → 0.13.2. 141 upstream commits reviewed (6.0.1 → 7.0.0); no fixes lost (the 6.0.x release-branch backports are all forward-ported into 7.0.0). Behavior-affecting findings:

  • object_store 0.13 moved convenience methods behind a new ObjectStoreExt trait (get/put/head/rename/delete; list/list_with_delimiter/put_opts stay on the core ObjectStore trait). Fix = add use object_store::ObjectStoreExt; to storage.rs and db/manifest/namespace.rs; no call-site changes. Mirrors Lance's own migration in PR #6672. The local-FS PutMode::Update gap is unchanged (still unimplemented upstream), so storage.rs::write_text_if_match's local content-token emulation stays.
  • roaring must be pinned to 0.11.4 (cargo update -p roaring --precise 0.11.4). Lance 7.0.0's UpdatedFragmentOffsets newtype (PR #6650) derives Eq over HashMap<u64, RoaringBitmap>, which needs RoaringBitmap: Eq — added only in roaring 0.11.4 (roaring-rs PR #341). Lance's loose roaring = "0.11" constraint otherwise resolves the broken 0.11.3 and lance itself fails to compile (RoaringBitmap: Eq is not satisfied). roaring is transitive (no direct workspace dep); the pin lives only in Cargo.lock.
  • _row_created_at_version for merge-insert INSERT rows now = the commit version (PR #6774; was a fallback of 1 / dataset-creation version). Flipped lance_version_columns.rs::lance_merge_insert_new_row_stamps_created_at_version to assert == v2. Production change-detection keys on _row_last_updated_at_version + ID-set membership, so classification logic is unaffected (the changes/mod.rs rationale comment was corrected).
  • BTREE range-query bound inclusiveness fixed (PR #6796, issue #6792): x <= hi AND x > lo returned the wrong boundary row on 6.0.1. omnigraph today builds BTREE only on string @key columns (id/src/dst) and queries them by equality/IN, not range, so its current query patterns almost certainly never hit this bug — but the corrected boundary semantics are a contract we rely on the moment a BTREE-range path appears (BTREE-on-properties via the index-type tickets, or a range-on-key query). Pinned by lance_surface_guards.rs::btree_range_query_boundary_is_correct (reproduces #6792's 5-row + BTREE shape).
  • WriteParams::auto_cleanup default flipped from on (every-20-commits) to None (PR #6755). On 6.0.1 the on-by-default hook could GC versions the __manifest pins for snapshots/time-travel. omnigraph owns cleanup explicitly (optimize.rs::cleanup_all_tables). Two parts to the fix, because auto_cleanup is create-time config only and has no effect on existing datasets (Lance write.rs docs): (1) auto_cleanup: None at all 11 WriteParams sites so new datasets store no cleanup config; (2) — the load-bearing half — skip_auto_cleanup: true on every commit path, because graphs created before the bump still carry the on-config in their datasets, and Lance's hook fires off the dataset's stored config at commit time (io/commit.rs: if !commit_config.skip_auto_cleanup). So the staged commit path (commit_stagedCommitBuilder::with_skip_auto_cleanup(true)), the __manifest publisher (MergeInsertBuilder::skip_auto_cleanup(true)), and the direct WriteParams paths all skip the hook. Without this, an upgraded graph would still auto-cleanup and delete __manifest-pinned versions. Pinned by lance_surface_guards.rs::skip_auto_cleanup_suppresses_version_gc (negative control + with-skip survival).
  • Lance #6658 SHIPPED in 7.0.0 (DeleteBuilder::execute_uncommitted, exposed via PR #6781) → MR-A (migrate delete to the staged two-phase API) has since landed (dev-graph iss-950): delete_where is retired, deletes stage via TableStorage::stage_delete, and the guard was flipped to _compile_uncommitted_delete_field_shape (pins execute_uncommitted / UncommittedDelete). StagedWrite must carry UncommittedDelete.affected_rows through commit_staged so Lance's row-level rebase metadata is preserved. The parse-time D2 rule is retained as a deliberate boundary (constructive XOR destructive per query), not as scaffolding awaiting further work.
  • The unenforced primary key is now immutable once set (lance::dataset::transaction, ~L24722480: if !primary_key_before.is_empty() && (writes_primary_key || primary_key_after != primary_key_before) → "the unenforced primary key is a reserved key and cannot be changed once set"). omnigraph marks __manifest.object_id as the unenforced PK (lance-schema:unenforced-primary-key) for merge-insert row-level CAS — baked into manifest_schema() at init, and added by the migrate_v1_to_v2 internal-schema migration for pre-v0.4.0 graphs. The migration relied on Lance 6's idempotent re-apply for crash-recovery (a crash after the field-set but before the stamp bump re-enters the migration with the PK already present); under v7 that re-apply errors, so a real v1 graph could never finish migrating. Fixed by guarding the set on the manifest's unenforced-PK field (db/manifest/migrations.rs::migrate_v1_to_v2): ["object_id"] → no-op, [] → set, any other PK field → loud refusal (the wrong CAS key, unchangeable under v7). Pinned by lance_surface_guards.rs::unenforced_primary_key_is_immutable_once_set (red if Lance relaxes immutability); regression: db::manifest::tests::test_publish_migrates_pre_stamp_manifest_to_current_version (was red under v7).
  • Native DirectoryNamespace no longer recognizes omnigraph's manifest-tracked tables (lance-namespace-impls dir.rs ~L1310): list/describe/create_table_version route through check_table_status, which reports an omnigraph table absent → TableNotFound. The decoupling is contingent on omnigraph's legacy boolean PK key, not an unconditional v7 property: v7's namespace eagerly adds the new lance-schema:unenforced-primary-key:position key to any __manifest lacking it; that write hits the immutable-PK rule above (the boolean key already set the PK), so ensure_manifest_table_up_to_date errors and the namespace silently falls back to directory listing. omnigraph keeps the boolean key deliberately — Lance honors it permanently (maps to PK position 0), and one uniform on-disk format beats a new-vs-old split (existing graphs can't be re-keyed to the position key under that same immutability rule). omnigraph production never uses Lance's native namespace (its publisher writes __manifest directly via merge_insert; its own namespace.rs impls are custom), so this is test-only — the test_directory_namespace_direct_publish_cannot_replace_native_omnigraph_write_path surface guard was realigned to the v7 behavior (it now asserts the native namespace is fully decoupled, which only strengthens the guard's thesis).
  • Still NOT fixed in 7.0.0: vector-index two-phase (Lance #6666 open) — create_vector_index inline residual retained; blob-column compaction — compact_files_still_fails_on_blob_columns guard still red on a fix, optimize still skips blob tables behind LANCE_SUPPORTS_BLOB_COMPACTION.
  • No Lance API surface omnigraph uses changed at compile time (the only compile break was object_store) — but two runtime behaviors did (the unenforced-PK immutability and the native-namespace TableNotFound, above), each caught by the full engine test suite rather than the build. CleanupPolicy, WriteParams (apart from the auto_cleanup default), CompactionOptions, the namespace models (resolved via lance-namespace-reqwest-client 0.7.7, unchanged across the bump), Operation, ManifestLocation, and MergeInsertBuilder shapes are all stable. Lesson: a clean build is not a clean alignment — run cargo test --workspace before declaring a Lance bump done.
  • Two surface guards added by the v3→v4 migration-robustness follow-up (not a Lance bump, but they pin Lance error surfaces the migration now classifies on): dataset_open_missing_returns_not_found_variant (a missing Dataset::open returns DatasetNotFound/NotFound — the legacy-open read in db/commit_graph.rs::read_legacy_commit_cache treats only those as "no legacy data" and propagates everything else) and lance_error_incompatible_transaction_variant_exists (a concurrent UpdateConfig stamp-bump loses with IncompatibleTransactiondb/manifest/migrations.rs::commit_v4_stamp_idempotently matches it to retry the benign same-value race). Re-run on a Lance bump like the others.

Bump this date stanza on the next alignment pass.

Prior alignment audit: 2026-05-22 (Lance 6.0.1 upstream; omnigraph pinned at 6.0.1)

Migration from Lance 4.0.0 → 6.0.1 landed in this cycle (DataFusion 52 → 53, Arrow 57 → 58, lance-tokenizer 6.0.1 added, tantivy* removed). Direct 4 → 6 jump; v5.x was not used as an intermediate (rationale in ~/.claude/plans/shimmering-percolating-duckling.md). Behavior-affecting findings:

  • DatasetIndexExt moved from lance-index to lance::index (Lance PR #6280, v5.0). Six import sites updated. lance-index::IndexType and lance-index::is_system_index stayed in lance-index. omnigraph-cli and omnigraph-server gained lance = { workspace = true } in their dev-dependencies.
  • DescribeTableResponse gained is_only_declared: Option<bool> (lance-namespace 6.0+, v5.0 PR #6186). Set to Some(false) in both BranchManifestNamespace::describe_table and StagedTableNamespace::describe_table — every table we return is physically materialized via Dataset::open, never "declared-only."
  • MergeInsertBuilder execute_reader return shape preserved (Arc<Dataset>, MergeStats); the publisher CAS chain at db/manifest/publisher.rs:370-391 works unchanged. Pinned by tests/lance_surface_guards.rs::_compile_merge_insert_builder_method_chain.
  • LanceError::TooMuchWriteContention variant retained in v6.0.1 (no rename). The typed publisher translation at db/manifest/publisher.rs:417-430 continues to apply. Pinned by lance_surface_guards.rs::lance_error_too_much_write_contention_variant_exists.
  • ManifestLocation field shape stable: .path: object_store::path::Path, .size: Option<u64>, .e_tag: Option<String>, .naming_scheme: ManifestNamingScheme. Pinned by lance_surface_guards.rs::manifest_location_field_shape.
  • LanceFileVersion::default() flipped V2_0 → V2_1 (v5.0). No effect — every data_storage_version callsite explicitly pins Some(LanceFileVersion::V2_2) (load-bearing for blob v2: Blob v2 requires file version >= 2.2 enforced in lance/src/dataset/write.rs:748).
  • Dataset::checkout_version(N).await?.restore().await?: restore() takes &mut self and returns Result<()> (mutates in place, does not consume + return a new dataset). The recovery rollback hammer at db/manifest/recovery.rs:505-522 continues to work. Pinned by lance_surface_guards.rs::_compile_checkout_version_then_restore_signature.
  • DatasetBuilder::from_namespace(...).with_branch(...).with_version(...).load() surface preserved (the namespace builder chain at db/manifest/namespace.rs:162-174). Pinned by lance_surface_guards.rs::_compile_dataset_builder_from_namespace_signature.
  • compact_files(&mut ds, CompactionOptions::default(), None) signature stable. CompactionOptions still does not expose data_storage_version; compact_files builds its own WriteParams { ..Default::default() }. Note: LanceFileVersion::default() is now V2_1 in v6, so optimize-rewritten fragments come out at V2_1 by default (was V2_0 in v4). Existing explicit V2_2 pins on creates/appends still apply.
  • Dataset::optimize_indices(&mut self, &lance_index::optimize::OptimizeOptions) (via DatasetIndexExt) is a depended-on surface as of the index-coverage work: db/omnigraph/optimize.rs calls it after compact_files to fold appended/rewritten fragments into existing indexes (incremental merge, not retrain). It is a committing call (mutates in place, advances HEAD; no uncommitted variant in v6.0.1), so optimize treats it as an inline-commit residual under the SidecarKind::Optimize recovery sidecar. Signature pinned by lance_surface_guards.rs::_compile_optimize_indices_signature; the incremental-coverage behavior pinned by optimize_indices_extends_fragment_coverage (appended fragment uncovered before, covered after).
  • Dataset::delete(predicate) returns DeleteResult { new_dataset: Arc<Dataset>, num_deleted_rows: u64 } — unchanged shape. Pinned by lance_surface_guards.rs::_compile_delete_result_field_shape. MR-A will repurpose this guard to the staged two-phase variant once DeleteBuilder::execute_uncommitted migration lands.
  • File reader read methods now async (Lance PR #6710, v6.0). No effect — omnigraph reaches Lance exclusively through Dataset::scan and the staged-write API.
  • Tokenizer vendored as lance-tokenizer (Lance PR #6512, v6.0). No effect — no direct tokenizer imports.
  • Lance #6658 closed (2026-05-14) but DeleteBuilder::execute_uncommitted did not ship in v6.0.1 — binary search across the release stream shows it first appears in v7.0.0-beta.10 (the closing commits landed on main but didn't backport to the 6.x line). Tracked as MR-A: migrate delete_where to staged, retire the parse-time D2 mutation rule, extend recovery sidecar coverage. Gated on the Lance v7.x bump, not this PR. v7.0.0-rc.1 dropped 2026-05-21.
  • Lance #6666 still open (build_index_metadata_from_segments public): vector-index two-phase blocked; inline create_vector_index residual retained.
  • Lance #6877 still open (MergeInsertBuilder dup-rowid): PR #109's SourceDedupeBehavior::FirstSeen + check_batch_unique_by_keys precondition stay load-bearing.
  • Dataset::force_delete_branch (branches().delete(name, force=true), dataset.rs:524) tolerates a missing branch-contents ref (vs plain delete_branch's RefNotFound), but on the local store still errors NotFound if the branch tree/ directory is fully absent (remove_dir_all's NotFound is not caught for Lance's native error variant, refs.rs:526-549). Both variants still refuse a branch with referencing descendants (RefConflict). TableStore::force_delete_branch wraps this to be fully idempotent (tolerates already-absent). The single-authority branch-delete redesign uses it for orphan reclamation (eager best-effort reclaim + cleanup reconciler). Pinned by lance_surface_guards.rs::force_delete_branch_semantics. Branch delete is "flip the ref atomically, then remove_dir_all(tree/{branch})"; branch-exclusive data lives under tree/{branch}/ so a drop reclaims it immediately without touching main.
  • Lance blob-v2 compact_files bug (no public issue found as of 2026-06): compact_files disables binary-copy for blob datasets and forces BlobHandling::AllBinary on the read side; the v2.1+ structural decoder then mis-counts column infos for the blob-v2 struct and fails with Invalid user input: there were more fields in the schema than provided column indices / infos (lance-encoding/src/decoder.rs::ColumnInfoIter::expect_next). This fails even a pristine uniform-V2_2 multi-fragment blob table; vector/list/scalar/ragged columns and mixed file versions all compact fine. Reads/queries use descriptor handling (BlobHandling::default()) and are unaffected. optimize skips blob-bearing tables behind LANCE_SUPPORTS_BLOB_COMPACTION = false (db/omnigraph/optimize.rs), reporting SkipReason::BlobColumnsUnsupportedByLance. Pinned by lance_surface_guards.rs::compact_files_still_fails_on_blob_columns, which turns red when the bug is fixed → flip the gate, remove the skip branch + the maintenance.rs::optimize_skips_blob_table_and_reports_skip skip assertions.

Surface guards added: crates/omnigraph/tests/lance_surface_guards.rs (10 named guards; 5 runtime + 5 compile-only; plus the index-coverage work's _compile_optimize_indices_signature and optimize_indices_extends_fragment_coverage). Future Lance bumps re-run this file first as the smoke check. Two additional guards from the original plan deferred to follow-up (manifest_cas_returns_row_level_contention_variant needs full publisher-race harness; table_version_metadata_byte_compatible_with_v4 needs pub(crate) reach extension).