412 commits

Author	SHA1	Message	Date
Alan Saul	ef778f75d4	Updated sampling and plots to be correct shape, and changed plotting of sampling to be posterior samples p(f*|f), like it used to be, and samples_y to plot samples of p(y*|y)	2015-09-10 11:08:28 +01:00
Mike Croucher	d3321251ef	Switched to scipy.special.log1p@	2015-09-07 16:34:53 +01:00
Mike Croucher	54ea44b9f9	Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel	2015-09-07 16:23:19 +01:00
Mike Croucher	fb444d8933	Used scipy.log1p since it gives more consistent results cross-platform	2015-09-07 16:23:10 +01:00
Mike Croucher	c47c63b408	Python 3 fixes	2015-09-07 14:07:09 +01:00
Ricardo	2745904c01	Shape of heteroscedastic variance corrected	2015-09-03 17:28:31 +01:00
Max Zwiessele	26bdcfa82e	[hetnoise] import correction	2015-09-02 15:45:55 +01:00
Max Zwiessele	74a7c6398b	[merge]	2015-09-02 14:34:23 +01:00
Ricardo	f780693577	New likelihood: HeteroscedasticGaussian	2015-09-02 13:29:33 +01:00
Max Zwiessele	70a9a26d7e	[core] updating system, security branching	2015-09-02 09:06:17 +01:00
Max Zwiessele	938cc49aed	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2015-08-28 16:28:25 +01:00
Max Zwiessele	4bd99c674f	[heteroscedastic gauss] Implemented Heteroscedastic Guassian Lik with @ric70x7	2015-08-28 16:28:01 +01:00
Max Zwiessele	0d32652c88	[heteroscedastic gauss] Implemented Heteroscedastic Guassian Lik with @ric70x7	2015-08-28 16:26:55 +01:00
James Hensman	60b5f071b4	sqrt(pi) term fix in Bernoulli	2015-08-18 17:11:54 +01:00
Alan Saul	da5de6b814	Added fallback for non-identity link function for Gaussian variational expectations	2015-08-18 16:29:44 +01:00
James Hensman	9780fb48de	fixing qualtile code for some likelhoods	2015-08-13 12:07:01 +01:00
Mike Croucher	dd059502ac	Python 3 fixes	2015-08-12 08:37:13 +01:00
Alan Saul	926b53bfce	Changed quantile computation via sampling and added fallback for predictive mean and variance if conditional mean and variance are not implemented yet	2015-07-22 18:33:11 +01:00
Alan Saul	a1c9168de4	Passing on y_metadata	2015-06-25 15:18:08 +01:00
James Hensman	24e759199e	sqrt pi term was missing in variational expectations	2015-06-12 16:58:29 +01:00
Alan Saul	56d50e0469	Reshaped log predictive density to have D outputs	2015-05-22 21:16:38 +01:00
Alan Saul	1acbcd2593	Fixed deg free gradient	2015-04-28 10:51:13 +01:00
Alan Saul	75ebe4bf10	Added log predictive density, student t degrees of freedom gradients and plotting functionality	2015-04-27 18:56:20 +01:00
Alan Saul	7abeed51de	Quadrature appeared to be out by a factor of 1/sqrt(pi)	2015-04-23 17:00:14 +01:00
James Hensman	e88b8a88d1	manual merging with AS	2015-04-16 12:45:04 +01:00
Alan Saul	361f0a5274	Fixed log predictive density, added option for LOO to provide some intemediate variables	2015-04-16 09:25:18 +01:00
Alan Saul	ab5f359103	Changed LOO implementation for Eq 30 instead of 37	2015-04-14 16:27:58 +01:00
Alan Saul	b6761c21d7	Added LOO for laplace and exact inference on training data, Gaussian logpdf appeared to be wrong, now fixed	2015-04-14 14:17:08 +01:00
Alan Saul	5c9587404d	Added some numerical stability to link functions with tests for link functions	2015-04-10 14:58:02 +01:00
James Hensman	ea787fd376	manual merging	2015-04-09 15:46:40 +01:00
James Hensman	1e30ffd730	speed ups for normal cdf	2015-04-09 15:42:02 +01:00
Mike Croucher	82a9bb9d93	Merge remote-tracking branch 'upstream/devel' into devel	2015-04-09 14:21:15 +01:00
Alan Saul	e658637c18	Added Y_metadata to log_predictive_density	2015-04-08 10:57:20 +01:00
Mike Croucher	5c653fa4b0	Fix merge conflicts	2015-04-01 13:03:48 +01:00
Mike Croucher	e82b5fe773	Resolve merge conflicts	2015-04-01 11:44:20 +01:00
Alan Saul	582aa4f406	More samples for predictive quantile	2015-03-27 15:30:40 +00:00
Alan Saul	1a253ff82a	Added safe_exp and tests	2015-03-27 15:14:52 +00:00
Alan Saul	4d27fddd37	Small tidying up	2015-03-27 14:24:24 +00:00
Alan Saul	3c7a1b9a91	Merge branch 'devel' into saul_merge	2015-03-27 14:17:34 +00:00
Alan Saul	0ea3d33695	Merging with private repo, mostly fixed	2015-03-27 14:17:03 +00:00
James Hensman	55dba3d2d9	shape changes for gradeitns of likelihood parameters in variational_expectations	2015-03-27 11:14:41 +00:00
James Hensman	534e0df606	some tests for the svgp, and some changes to the likelihoods	2015-03-24 14:11:50 +00:00
James Hensman	53081c704d	derivatives of likelihood things now working for svgp	2015-03-24 13:58:41 +00:00
Mike Croucher	7930eb646f	Merge from upstream	2015-03-13 14:23:40 +00:00
Alan Saul	233c5ee8b4	Updated other likelihoods to give back logpdf and gradients for each link_f rather than summing on the inside	2015-03-09 10:27:21 +00:00
James Hensman	48821a6b73	Added binomial likelihood ... Also some changes to pass through Y_metadata, where it had previously been (errorneously) omitted.	2015-03-05 10:26:02 +00:00
Mike Croucher	2b8ef1041b	Exception fixes for Python 3 compat	2015-02-26 13:43:55 +00:00
Mike Croucher	29da6ff065	Merge remote-tracking branch 'upstream/devel' into devel	2015-02-26 08:25:51 +00:00
Mike Croucher	2ca24a88f5	More relative import fixes for Python 3 compatibility	2015-02-26 07:14:40 +00:00
Mike Croucher	5e4afb765a	Relative import fixes for Python 3 compatibility	2015-02-26 07:10:10 +00:00