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Author SHA1 Message Date
Max Zwiessele
23ff53f7f8 BGPLVM with missing data 2013-12-16 11:39:39 +00:00
Max Zwiessele
a6725b55e1 pca adjustements to lvm models 2013-12-16 11:37:42 +00:00
Max Zwiessele
f9c9e8e1d5 ppca added, ppca missing data not working yet 2013-12-16 11:36:23 +00:00
Max Zwiessele
60b299bd5d diagonal operations 2013-12-16 11:36:01 +00:00
Max Zwiessele
415e3256c0 subarray indexing 2013-12-16 11:35:47 +00:00
mu
4d360dae77 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2013-12-13 14:10:36 +00:00
mu
fa08d20f58 ODE UY dkdtheta 2013-12-13 14:10:03 +00:00
Andreas
2e99fa1502 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-12-13 14:01:06 +00:00
Andreas
4d82f30367 Small changes in svigp 2013-12-13 14:01:01 +00:00
mu
054b98d55b UY dkdtheta 2013-12-13 13:39:28 +00:00
James Hensman
7c78358445 ensure_defaiult constraints in svigp 2013-12-12 15:45:35 +00:00
Alan Saul
997b5d596d Bug in ODE_UY fix 2013-12-12 15:35:59 +00:00
James Hensman
63ab143e7c some tifying in the models classes 2013-12-12 14:18:18 +00:00
James Hensman
cd3bcee11c some minor edit to Bernoulli 2013-12-12 02:27:20 -08:00
James Hensman
12c3877b50 moving fitc 2013-12-11 16:15:18 -08:00
James Hensman
414257466e adding a copright notice 2013-12-11 16:14:51 -08:00
James Hensman
d703afd96a some work in the Gaussian likelihood 2013-12-11 16:03:36 -08:00
James Hensman
f1a08fbfdb mostly docstring noodling 2013-12-11 15:42:25 -08:00
mu
c793e5d916 UY dkdtheta 2013-12-11 16:24:35 +00:00
Alan Saul
990dab77ff Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-12-11 15:48:07 +00:00
James McMurray
b6d8617d04 Adding data_resources.json to setup data files 2013-12-11 15:45:27 +01:00
James McMurray
4f3e9f2bf7 Testing modification for ReadTheDocs to stop docstring errors 2013-12-11 13:27:54 +01:00
James Hensman
9011d8fe2f some noodling around in the likelihoods 2013-12-10 14:51:11 -08:00
Nicolo Fusi
45f76cc532 removed print statements from config parser, commented out ODE kerns 2013-12-10 14:32:30 -08:00
Nicolo Fusi
b984acaa80 Merge branch 'devel' 2013-12-10 14:08:28 -08:00
Nicolo Fusi
ebd2752d5b Merge branch 'devel' 2013-12-10 14:07:18 -08:00
James Hensman
d8a627c1d8 fixed bug introduced my merge 2013-12-10 12:17:59 -08:00
James Hensman
8d5fc8a2e2 merged in params 2013-12-10 11:56:35 -08:00
mu
9b32fd47ee Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2013-12-10 17:12:23 +00:00
mu
bab477f149 ode UY 2013-12-10 17:07:37 +00:00
mu
cb36368d13 dk dparameter 2013-12-10 12:38:34 +00:00
Max Zwiessele
a3bf662fd3 array handling in plotting and weave 2013-12-09 00:19:37 +00:00
Max Zwiessele
e1bb3e508e naming and pil changes 2013-12-07 18:45:24 +00:00
James Hensman
fed4134727 modified docstrings 2013-12-06 16:47:08 -08:00
James Hensman
e6593db781 adding empyy init file 2013-12-06 15:54:01 -08:00
James Hensman
ee68377f5e more work on the posterior class 2013-12-06 11:48:32 -08:00
James Hensman
83a49f132a Added the structure to posterior.py to enable... 
to enable computation from the posterior mean and variance, instead of
the woodbury componnents

This iss the first step in being able to use this structre for EP and
the laplace approximation.
 2013-12-06 09:50:01 -08:00
James Hensman
5ec64d2279 more massive and destructive changes everywhere 2013-12-05 15:09:31 -05:00
James Hensman
881800126f many dramatic cahnges. at least it import without error. 2013-12-05 13:49:38 -05:00
James Hensman
7812a7dc7d moved functional part of sparseGP to inference/dtcvar 2013-12-05 10:56:18 +00:00
James Hensman
3549a676a8 tidied up gp_base and gp 2013-12-04 20:12:40 +00:00
James Hensman
f5bae4450f Lots of tidying in the inference section 2013-12-04 17:58:02 +00:00
Alan Saul
eba553fe2c Fixed the numerical quadrature, won't work with large f unless normalized 2013-12-04 14:33:16 +00:00
Alan Saul
f8707c3918 Fixed lots of breaking tests, reduced step size for checkgrad to 1e-4 in tests (perhaps this should be global), added some missing attributes to data_resources.json 2013-12-04 12:44:13 +00:00
James Hensman
435cbbc421 adding exact gaussian inference 2013-12-04 12:02:30 +00:00
James Hensman
48c292d263 added some docstrings and the posterior class structure 2013-12-04 11:50:18 +00:00
James Hensman
326c74ef8a messing wih he inference directory now 2013-12-04 11:34:14 +00:00
James Hensman
83a495645d some more messing with the likelihood directory 2013-12-04 11:32:12 +00:00
James Hensman
daaad3c30c first commit in new structure 2013-12-04 11:20:25 +00:00
Alan Saul
cb6c1dd0d2 Set warnings for truncated hessian, it has been noted that that by 
truncating we can have incorrect posteriors, though at convergence
this should not be a problem, could be fixed by not using Cholsky
as the decomposition as it cannot handle non-positive definite mats
 2013-12-03 15:21:45 +00:00