Zhenwen Dai
6119c33078
Support non-symmetric dL_dKmm for stationary kernel
2014-06-03 11:34:32 +01:00
Zhenwen Dai
2b5753e6f6
Merge branch 'devel' of github.com:SheffieldML/GPy into devel
2014-05-30 18:56:32 +01:00
Zhenwen Dai
6e30f3c6c3
[splitkern] support idx_p==0
2014-05-30 18:56:23 +01:00
James Hensman
8eaa0bbf8a
basic vardtc working
2014-05-30 16:45:51 +01:00
Ricardo
6877b21fad
Merge branch 'devel' of github.com:SheffieldML/GPy into devel
2014-05-30 16:23:51 +01:00
James Hensman
2a69312aa0
Merge branc( 'devel' of github.com:SheffieldML/GPy into devel
2014-05-30 09:22:47 +01:00
James Hensman
ed74a81732
editied whitespace
2014-05-30 09:22:43 +01:00
Zhenwen Dai
47ba2542c2
minor changes
2014-05-29 17:11:26 +01:00
Zhenwen Dai
4c538efb64
DiffGenomeKern bug fix
2014-05-29 17:10:14 +01:00
Neil Lawrence
dd6f7c1f4c
Modified Spellman et al data load.
2014-05-29 16:57:01 +01:00
zhenwen
ea1326c8c8
[splitkern] some more changes
2014-05-29 14:54:11 +01:00
Ricardo
7dd6031a0b
Merge branch 'devel' of github.com:SheffieldML/GPy into devel
2014-05-29 14:37:18 +01:00
Zhenwen Dai
5f08152651
[splitkern] some additional implmentation
2014-05-29 14:03:59 +01:00
Zhenwen Dai
c2568d2e9f
[splitkern] bug fix
2014-05-29 13:21:14 +01:00
Zhenwen Dai
f9291fe7da
[splitkern] buf fix
2014-05-29 11:21:19 +01:00
Zhenwen Dai
5d728f7715
Merge branch 'devel' of github.com:SheffieldML/GPy into devel
2014-05-29 10:30:11 +01:00
Zhenwen Dai
74b62ab3c3
merge the bug of fixing function
2014-05-29 10:29:18 +01:00
James Hensman
dadbc6c92d
merging
2014-05-29 10:27:37 +01:00
Zhenwen Dai
988889247c
developing split kernel
2014-05-29 10:27:36 +01:00
James Hensman
7a3d13894f
reverting the fixing behaviour.
...
two reasons: 1) the new behaviour is confusing for new users. Either
something is fixed, or it's not. 2) the fixing didn't work! things that
should have been fixed were passed to the optimizer for optimization.
If we really want to save keystrokes, consider this:
m.foo.fix()
m.foo.unfix()
m.foo.constrain_positive()
is the same as
m.foo.fix()
m.foo.constrain_positive()
but the latter throws a warning.
2014-05-29 10:24:20 +01:00
Zhenwen Dai
627cf9c86c
developing split kernel
2014-05-29 10:13:16 +01:00
James Hensman
ac2d28e2fd
reverting the fixing behaviour.
...
two reasons: 1) the new behaviour is confusing for new users. Either
something is fixed, or it's not. 2) the fixing didn't work! things that
should have been fixed were passed to the optimizer for optimization.
If we really want to save keystrokes, consider this:
m.foo.fix()
m.foo.unfix()
m.foo.constrain_positive()
is the same as
m.foo.fix()
m.foo.constrain_positive()
but the latter throws a warning.
2014-05-29 09:55:49 +01:00
Neil Lawrence
0fde50f56d
Changes to configuration file set up: now uses defaults.cfg, installation.cfg and searches locally for .gpy_user.cfg in the users home directory.
2014-05-28 10:25:02 +01:00
Neil Lawrence
9ea236112e
Added CIFAR-10 data to data sets.
2014-05-27 16:27:27 +01:00
Neil Lawrence
e3b6d9c9c5
Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel
2014-05-24 15:31:50 +01:00
Neil Lawrence
de75d7dac1
New data sets
2014-05-24 15:31:42 +01:00
teodecampos
f84f3f4308
Fixed an assertion, it was checking the dimensionality of the input data matrix, rather than that of the labels.
2014-05-23 17:18:38 +01:00
mzwiessele
0252fae298
[bgplvm] do test latents updated for devel branch
2014-05-23 13:26:41 +01:00
mzwiessele
3525e45b2f
[copy] is now fully functional, only hierarchy observers will be copied and pickled
2014-05-23 11:11:21 +01:00
mzwiessele
96e1e13f7e
[dim_reduce examples] updated robot_wireless
2014-05-22 15:32:59 +01:00
mzwiessele
d6bf3b0d79
[dim_reduce examples] updated swiss roll
2014-05-22 15:25:26 +01:00
mzwiessele
fa750d4ba4
[dim_reduce examples] updated plotting of brendan and bgplvm_oil
2014-05-22 15:08:36 +01:00
mzwiessele
6534e6606d
[tests] added some unfix fix print and gradcheck tests, it basically just behaves as a user would do with a model
2014-05-22 12:56:02 +01:00
mzwiessele
c2e3bf5bce
[caching] catching key error, when individuum is already gone
2014-05-22 12:55:18 +01:00
mzwiessele
9bf7e1baf6
[optimizer&fixing] optimizer has only one optimizer copy and fixing remembers old constraint
2014-05-22 12:44:50 +01:00
mzwiessele
5a2bc4863b
[optimizer] one copy for the optimizer in optimizer_array, use this instead of _set|get_params_transformed
2014-05-22 11:39:04 +01:00
Max Zwiessele
43ee8ce614
[reverts] some reverts, as one param etc does not work
2014-05-21 16:49:47 +01:00
Zhenwen Dai
b945c20004
restructure rbf kernel
2014-05-21 16:42:35 +01:00
Max Zwiessele
6b2681d849
[caching] first things first
2014-05-21 16:40:57 +01:00
Max Zwiessele
24a34aee95
[model] exactly two parameter copy in memory
2014-05-21 16:33:44 +01:00
Max Zwiessele
dc628f558a
[gp] output data is a copy now
2014-05-21 16:32:44 +01:00
Max Zwiessele
156ba00719
[bgplvm&mrd] missing data greatly improved, still not there yet
2014-05-21 16:32:06 +01:00
Zhenwen Dai
04ab93a961
BayersianGPLVM mpi support
2014-05-21 12:44:24 +01:00
Alan Saul
a0d6634387
Added a numpy version of univariate gaussian, untested
...
and is significantly slower but may be useful soon.
2014-05-21 11:30:52 +01:00
Zhenwen Dai
52c0be1848
merge devel branch in
2014-05-21 10:38:34 +01:00
Zhenwen Dai
a2203179f6
[psi2] implement RBF cpu
2014-05-21 10:34:51 +01:00
Max Zwiessele
b520eb212c
[fixing] fixing now saves the old constraint
2014-05-20 16:39:52 +01:00
Max Zwiessele
c507cfe4ab
[index operations] added lookup for properties for a given index as dict <properties, subindex> for given index
2014-05-20 16:06:56 +01:00
Max Zwiessele
ef256223d1
[mrd] more control for init, some missing data adjustements, init greatly improved
2014-05-20 14:49:20 +01:00
Max Zwiessele
995de897b3
[core updates] first try to switch updates off and on. Use m.updates = False to switch updates off, and vice-versa
2014-05-20 14:48:53 +01:00
