Commit graph

4405 commits

Author SHA1 Message Date
Zhenwen Dai
f221a3b1fa add missing file 2015-08-20 17:35:22 +01:00
Zhenwen Dai
0e01474aec Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-08-20 17:33:56 +01:00
Zhenwen Dai
1d2b771e09 psi-statistics for any kernels via Gaussian quadrature 2015-08-20 17:33:49 +01:00
Ricardo Andrade
0d995a56b2 gradients w.r.t. kappa corrected
np.diag(dL_dK_small) needs to be copied
2015-08-19 16:00:31 +01:00
Alan Saul
80161665b8 Trying to make travis print warnings 2015-08-19 10:10:41 +01:00
Alan Saul
624d65493c Fixed laplace seed, added debugging for misc tests 2015-08-18 17:41:25 +01:00
James Hensman
33d8441ac8 Merge branch 'devel' of github.com:/sheffieldml/gpy into devel 2015-08-18 17:12:21 +01:00
James Hensman
60b5f071b4 sqrt(pi) term fix in Bernoulli 2015-08-18 17:11:54 +01:00
Alan Saul
94b33a6151 Removed installation conflict 2015-08-18 16:59:20 +01:00
Alan Saul
0edf614220 Updated travis for 0.16 scipy 2015-08-18 16:54:42 +01:00
Alan Saul
2d14f1608d Added variational expectation tests updates 2015-08-18 16:30:17 +01:00
Alan Saul
fa01d29f69 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2015-08-18 16:29:49 +01:00
Alan Saul
da5de6b814 Added fallback for non-identity link function for Gaussian variational expectations 2015-08-18 16:29:44 +01:00
James Hensman
72a5eb3fc1 adding var_gauss.py 2015-08-18 16:18:01 +01:00
Alan Saul
51092854fc Added testing of variational expectations, analytic vs numeric, and gradient checks 2015-08-18 16:03:45 +01:00
James Hensman
7ba26eda1c the Opper-Archambeau method is now implemented as an inference method in the GPy style 2015-08-18 11:39:27 +01:00
James Hensman
ea3bfbb597 minor bugfixes in plotting: quantiles are now computed using predict_kw
correctly
2015-08-18 08:00:47 +01:00
Zhenwen Dai
097b048100 improve the stability of parallel inference code 2015-08-17 17:49:37 +01:00
James Hensman
5c35d70a56 Merge branch 'devel' of github.com:/sheffieldml/GPy into devel 2015-08-17 16:32:35 +01:00
James Hensman
c79c74a2d6 tidied link_fn tests 2015-08-17 16:32:27 +01:00
Alan Saul
65b6e54d5c Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-08-17 16:06:47 +01:00
Alan Saul
070137504a Added full cov prediction 2015-08-17 16:06:43 +01:00
James Hensman
e144463ce7 Merge pull request #216 from Dapid/devel-cython_update
ENH: various Cython enhancements, mostly releasing the GIL
2015-08-17 15:15:39 +01:00
James Hensman
4656962337 tidied setup.py 2015-08-17 15:04:43 +01:00
James Hensman
e61699d5e2 Merge branch 'Dapid-devel-cythonchol' into devel 2015-08-17 15:01:46 +01:00
James Hensman
f292f6edd0 running cython 2015-08-17 15:01:19 +01:00
James Hensman
521ca142bb reenabling gil 2015-08-17 15:00:29 +01:00
James Hensman
6068369979 minor corrections :) 2015-08-17 14:57:54 +01:00
David Menéndez Hurtado
a379382dd5 ENH: various Cython enhancements, mostly releasing the GIL when not needed 2015-08-17 14:46:37 +02:00
James Hensman
79127d146b Merge branch 'devel' into Dapid-devel-cythonchol 2015-08-17 13:38:23 +01:00
James Hensman
0e7bacbec9 adding new test for cholesky backprop 2015-08-17 13:34:09 +01:00
James Hensman
8a7191c395 Merge branch 'devel-cythonchol' of git://github.com/Dapid/GPy into Dapid-devel-cythonchol 2015-08-17 13:05:30 +01:00
David Menéndez Hurtado
629e57257f FIX: ensuring contiguity of the buffers for BLAS call and returning a Numpy array 2015-08-17 13:39:03 +02:00
David Menéndez Hurtado
fb77c00da7 FIX: transforming the indexing to 2D 2015-08-17 13:24:55 +02:00
David Menéndez Hurtado
da7e4e3af6 ENH: implementing the Cholesky backpropagation through Scipy's BLAS 2015-08-17 12:21:54 +02:00
James Hensman
e3fd7885bf ENH: fixed up BCGPLVM to work with new framework 2015-08-17 11:06:45 +01:00
James Hensman
80f554adfd another relative import (py3) bug 2015-08-13 12:32:17 +01:00
James Hensman
4f6a0e728a Merge pull request #183 from AlexGrig/std_periodic_kernel
ENH: Adding standard periodic kernel
2015-08-13 12:11:33 +01:00
James Hensman
2bd22ff0f5 Merge pull request #191 from mellorjc/master
adding an exponential prior
2015-08-13 12:08:15 +01:00
James Hensman
9780fb48de fixing qualtile code for some likelhoods 2015-08-13 12:07:01 +01:00
James Hensman
2af47f1d31 Merge branch 'devel' of github.com:/sheffieldml/GPy into devel 2015-08-13 10:04:15 +01:00
James Hensman
c8b54ff887 fixed a plotting bug 2015-08-13 10:04:06 +01:00
Zhenwen Dai
aa54042b10 change the default name of sparse_gp_mpi class 2015-08-13 10:00:05 +01:00
James Hensman
90df33af50 tidied model_tests 2015-08-13 09:27:03 +01:00
James Hensman
affd538687 removed randomness from inference tests by setting np.seed 2015-08-13 09:10:16 +01:00
James Hensman
0883c2e556 caught warnings in misc_tests 2015-08-13 08:54:56 +01:00
James Hensman
a344155827 fixed relative import in spline 2015-08-13 08:41:54 +01:00
James Hensman
dbbf4a2e69 fixed conflict in plotting 2015-08-12 16:04:58 +01:00
James Hensman
a07eea143e Merge branch 'tjhgit-devel' into devel 2015-08-12 16:01:37 +01:00
James Hensman
94d5a0042c merging. conflict in relative import styles 2015-08-12 16:00:48 +01:00