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Author SHA1 Message Date
Zhenwen Dai
c6cf0bc121 add set_Z function 2015-03-09 17:26:18 +00:00
Alan Saul
233c5ee8b4 Updated other likelihoods to give back logpdf and gradients for each link_f rather than summing on the inside 2015-03-09 10:27:21 +00:00
James Hensman
48821a6b73 Added binomial likelihood 
Also some changes to pass through Y_metadata, where it had previously
been (errorneously) omitted.
 2015-03-05 10:26:02 +00:00
James Hensman
89b8b0d298 messy merge 2015-03-03 17:08:33 +00:00
James Hensman
965f1aa2cb removed climin dependency unless actually needed 2015-03-03 17:04:15 +00:00
frb-yousefi
df4dde91c5 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2015-02-27 13:24:25 +00:00
frb-yousefi
46e67c03cf DGPLVM 2015-02-27 13:23:08 +00:00
mzwiessele
b616214252 Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel 2015-02-26 14:24:11 +00:00
mzwiessele
ed6da422eb [pickling errors] due to too little constant jitter, the gradient checks in pickle tests did not pass 2015-02-26 14:24:07 +00:00
mzwiessele
f1e7760403 [verbose optimization] added automatic detection of ipython notebook support, this is experimental 2015-02-26 13:52:20 +00:00
mzwiessele
fc4b38fe59 [sparse gp] prediction without missing data and uncertain inputs was bugged 2015-02-26 13:51:47 +00:00
James Hensman
9f51137469 Merge pull request #174 from beckdaniel/kernel_prod_bugfix 
Kernel product bugfix
 2015-02-26 10:22:00 +00:00
James Hensman
c8b70dd77a Merge pull request #177 from mellorjc/master 
matplotlib interactive mode only in IPython
 2015-02-26 10:14:23 +00:00
James Hensman
f1da8c0fec Merge branch 'devel' of github.com:/sheffieldml/GPy into devel 2015-02-25 16:10:38 +00:00
mzwiessele
924899069e [optimization] experimental auto detect of ipython notebook 2015-02-24 11:56:36 +00:00
mzwiessele
72c6b66983 [updateable] update field in observable 2015-02-24 11:56:06 +00:00
mzwiessele
85ae035e32 [var_dtc] constant jitter 1e-10 2015-02-24 11:55:22 +00:00
Zhenwen Dai
11cc5d16f4 add save param_array 2015-02-23 16:19:14 +00:00
javiergonzalezh
b49228d1d0 minor error in corregionalization corrected 2015-02-23 15:02:50 +00:00
mzwiessele
6435b83c7a [sparse gp] prediction with uncertain inputs 2015-02-21 14:43:10 +01:00
mellorjc
f25797cd61 catch only a specific error 
catch only NameError, rather than everything.
 2015-02-19 11:45:57 +00:00
mellorjc
7ad275ce8a matplotlib interactive mode only in IPython 
have interactive mode only in IPython so that running scripts that plot from python behave like normal.
 2015-02-19 11:31:46 +00:00
Zhenwen Dai
9f7ae611ed force set_XY to update the model 2015-02-17 10:49:06 +00:00
Zhenwen Dai
c5c8b8341c A temporal fix for the problem of sometimes the model not being updated. 2015-02-17 10:48:26 +00:00
Zhenwen Dai
ae5d70b063 add mcmc into inference import 2015-02-15 19:24:51 +00:00
James Hensman
7920ff0b4d Merge branch 'devel' of github.com:/sheffieldml/GPy into devel 2015-02-11 11:49:59 +00:00
James Hensman
482bd1472c reconfigured svgp inference a little 2015-02-11 11:49:45 +00:00
James Hensman
393b9e94ba added more stable expectations for Bernoulli 2015-02-10 16:15:37 +00:00
James Hensman
06d7e690f3 minor weave/numpy bug in coregionalize 2015-02-10 15:54:59 +00:00
James Hensman
475eceb4dd Merge branch 'devel' of github.com:sheffieldml/GPy into devel 2015-02-10 14:23:11 +00:00
James Hensman
b499a870fb fixed a plotting bug for sliced plots 2015-02-10 14:23:03 +00:00
Alan Saul
f690192384 Added logging for jitter so we know how much has been added and how many tries have been taken 2015-02-10 11:52:40 +00:00
Alan Saul
952851de88 Bug in linalg jitchol!!! 2015-02-09 19:38:19 +00:00
Alan Saul
cfdd72fc72 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-02-09 19:36:08 +00:00
Alan Saul
29d153e185 Bug in linalg jitchol!!! 2015-02-09 19:35:46 +00:00
Daniel Beck
98c743d157 test + code change in gradients_X 2015-02-09 10:02:26 +11:00
Daniel Beck
fc8705104b a cleaner test 2015-02-09 09:41:21 +11:00
Daniel Beck
d6a56a6f0b changed operator.mul to np.multiply for consistency 2015-02-09 09:35:32 +11:00
Daniel Beck
8b4274339a added decorator that changes numpy invalid op warning to exception 2015-02-09 09:28:53 +11:00
Daniel Beck
1d2cbfe44a first attempt 2015-02-06 19:39:46 +11:00
Max Zwiessele
e967c95ef0 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-01-30 09:43:06 +00:00
Max Zwiessele
167e9c538d [var dtc] added code for additional covariates, not affecting normal procedures 2015-01-30 09:43:02 +00:00
Neil Lawrence
47cbdc265e Update __init__.py 
Add inference to __init__.py
 2015-01-21 08:15:52 +01:00
Neil Lawrence
8288240b7d Update hmc.py 2015-01-21 08:14:35 +01:00
Cristian Guarnizo
81c57140c4 Update __init__.py 
Added EQ_ODE2.
 2015-01-19 11:28:27 -05:00
Cristian Guarnizo
88f69312eb Create eq_ode2.py 
Added ODE2 kernel for latent force models.
 2015-01-19 11:27:07 -05:00
Max Zwiessele
57e941140c [opt] unified printing of status of optimization 2015-01-15 09:02:45 +00:00
Max Zwiessele
4deac0103c [transformations] bugfix for pickling 2015-01-15 09:02:22 +00:00
Max Zwiessele
7fbbdafdbf [opt] bugfix 2015-01-13 15:07:24 +00:00
Max Zwiessele
be3c8f5202 [verbose opt] messages would be overwritten when using ipython_notebooks, fixed 2015-01-13 14:29:28 +00:00