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643 commits

Author SHA1 Message Date
Max Zwiessele
9d262936c6 array core and bgplvm working > changes due to __i<op>__ will now be reported 2014-02-11 16:54:33 +00:00
Max Zwiessele
79aca59a37 parameter handling with default constraints 2014-02-11 14:44:15 +00:00
Max Zwiessele
6a068775f5 Merge branch 'params' of github.com:SheffieldML/GPy into params 
Conflicts:
	GPy/core/parameterization/param.py
	GPy/core/parameterization/parameter_core.py
	GPy/core/parameterization/parameterized.py
 2014-02-10 15:21:09 +00:00
Max Zwiessele
e0c68d5eb3 _highest_parent_ now follows the tree, dK_dX > gradient_X, added update_grads_variational to linear, bgplvm for new framework 2014-02-10 15:12:49 +00:00
Alan Saul
186feb45a1 Fixed likelihood tests for new parameters structure 2014-02-07 15:16:52 +00:00
Max Zwiessele
b2328c4f47 starting varDTC with uncertain inputs [not working] 2014-02-05 10:48:23 +00:00
James Hensman
ae03b63afb tidied up sparse_gp_regression 2014-01-29 09:40:22 +00:00
Ricardo
bb0e2a6237 Plotting functions modified 2014-01-28 13:42:14 +00:00
James Hensman
563fbd257b some gplvm related fixes 2014-01-24 16:37:20 +00:00
James Hensman
a8c760932e beginnings of gplvm 2014-01-24 15:56:27 +00:00
James Hensman
7bb6f4ba4e Merge branch 'params' of github.com:SheffieldML/GPy into params 2014-01-24 15:48:49 +00:00
James Hensman
13cc747623 foo 2014-01-24 15:48:45 +00:00
Max Zwiessele
cec766b723 getstate > _getstate and setstate > _setstate 2014-01-24 15:48:23 +00:00
James Hensman
3fd4e19acd added all authors to GP Regression copyright 2014-01-24 15:48:08 +00:00
James Hensman
0c51239bdd removed fitc_classification modle 2014-01-24 10:18:13 +00:00
Max Zwiessele
0733886ba0 all parameterization stuff now in seperate module -> GPy.core.parameterization 2013-12-16 13:45:24 +00:00
James Hensman
63ab143e7c some tifying in the models classes 2013-12-12 14:18:18 +00:00
James Hensman
8d5fc8a2e2 merged in params 2013-12-10 11:56:35 -08:00
Max Zwiessele
a3bf662fd3 array handling in plotting and weave 2013-12-09 00:19:37 +00:00
Max Zwiessele
e1bb3e508e naming and pil changes 2013-12-07 18:45:24 +00:00
James Hensman
83a49f132a Added the structure to posterior.py to enable... 
to enable computation from the posterior mean and variance, instead of
the woodbury componnents

This iss the first step in being able to use this structre for EP and
the laplace approximation.
 2013-12-06 09:50:01 -08:00
James Hensman
5ec64d2279 more massive and destructive changes everywhere 2013-12-05 15:09:31 -05:00
James Hensman
3549a676a8 tidied up gp_base and gp 2013-12-04 20:12:40 +00:00
Max Zwiessele
8c02e4af36 added BGPLVM in parameterized 2013-11-06 15:15:13 +00:00
Max Zwiessele
3316d29341 added gplbm and sparse gp to new parameterized structure 2013-11-06 11:40:54 +00:00
Max Zwiessele
d8151eee61 X caching is not yet done, parameter caching working fine. X cache must be adjusted to update at the right times 2013-10-27 17:04:46 +00:00
Max Zwiessele
9a70f27010 first adjustments to the model and gps -> updates and gradient transforms 2013-10-22 13:41:01 +01:00
Max Zwiessele
bc765134c0 make sure _init_ is not overriden 2013-10-17 14:37:39 +01:00
James Hensman
a59d980327 Nparam changes to num_params 2013-10-08 14:49:18 +01:00
Andreas
958e9f7c7a Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-10-08 11:31:13 +01:00
Andreas
f008c1919b Normalize Y given as an argument to constructor 2013-10-08 11:28:15 +01:00
Ricardo
0ae9f9aafd Fixing W_columns and num_outputs nomenclature 2013-09-23 17:29:33 +01:00
James McMurray
aa5ebcbd8f Fixed more errors in docs 2 2013-09-20 17:46:23 +01:00
James McMurray
5bf20f7bd7 Merge branch 'devel' of git://github.com/SheffieldML/GPy into devel 2013-09-20 14:29:33 +01:00
James McMurray
be3880c0bd Fixed docstring warnings - could still be mistakes 2013-09-20 13:38:20 +01:00
James Hensman
7af2d62ee6 do_test_latents appears to be working now 2013-09-20 13:03:24 +01:00
Ricardo
7bdaa41d57 Reverting error 2013-09-18 14:45:06 +01:00
Ricardo
2762e158fd normalize_Y is passed to core function 2013-09-17 17:44:00 +01:00
Ricardo
7e4dca7e3a Heaviside transformation fixed 2013-09-16 16:55:12 +01:00
Ricardo
603aa18482 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 
Conflicts:
	GPy/examples/regression.py
	GPy/kern/constructors.py
	GPy/testing/kernel_tests.py
	GPy/util/multioutput.py
 2013-09-16 12:32:42 +01:00
Ricardo
1931e447f4 print_all function removed, print m works as before. 2013-09-16 12:24:37 +01:00
Neil Lawrence
dffa9541c2 Merged conflict of model.py 2013-09-14 20:05:42 +01:00
Neil Lawrence
00d335444d Changed kern.py so that X2 is correctly passed as None to the kern parts for dK_dX. Modified several kern parts so that dK_dX is correctly computed (factors of 2 missing). Removed spurious factors of 2 from gplvm, bcgplvm, sparse_gp and fitc code. 2013-09-14 20:02:40 +01:00
Ricardo
4bb2ea9606 coregionalisation changed to coregionalization 2013-09-14 17:23:17 +01:00
Ricardo
1bc9374717 linK2_functions2 merged 2013-09-13 18:09:59 +01:00
Ricardo
f8c9e6b982 Merge branch 'linK_functions2' into devel 
Conflicts:
	GPy/core/gp.py
	GPy/core/gp_base.py
	GPy/core/sparse_gp.py
	GPy/examples/regression.py
	GPy/kern/constructors.py
	GPy/kern/parts/coregionalise.py
	GPy/models/__init__.py
	GPy/models/sparse_gp_classification.py
	GPy/util/__init__.py
 2013-09-13 15:57:34 +01:00
Ricardo
d653921bf3 Useless files deleted 2013-09-13 13:09:55 +01:00
Ricardo
f4794fb79d Moved to (sparse_)gp_multioutput_regression 2013-09-13 13:06:01 +01:00
Ricardo
c01ca1d007 Doesn't matter I'll erase this file 2013-09-13 13:03:12 +01:00
Ricardo
34bac4fa40 Sparse multiple outputs model with Gaussian noise 2013-09-13 12:51:05 +01:00