Akash Kumar Dhaka
f9a0325b9e
adding some test cases for EP.. more work needs to be done, these are some high level test cases ..
2017-06-12 13:46:50 +03:00
Zhenwen Dai
bd8947c8c2
Merge pull request #512 from pgmoren/EP_refactor
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Refactor EP/EPDTC
2017-06-09 18:01:56 +01:00
Moreno
dd0d8f7862
Refactor EP and EPDTC
2017-06-08 11:00:17 +01:00
dirmeier
31c03b431a
Added LICENSE file to MANIFEST.in
2017-06-05 20:17:31 +02:00
Zhenwen Dai
8569424933
Merge pull request #508 from esiivola/EP_refactor
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Bring the ongoing working about EP refactoring
2017-06-02 11:59:46 +02:00
Akash Kumar Dhaka
84e39667fa
change import statements for calling locally
2017-06-01 16:07:50 +03:00
Akash Kumar Dhaka
61872fb315
fresh branch for these new likelihood functions along with test code- will work atleast with La[lace approximation ...
2017-06-01 15:03:19 +03:00
Moreno
63751de912
Changes in EP/EPDTC to fix numerical issues and increase the flexibility of the inference.
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Changes to avoid numerical issues and improve the performance:
- Keep value of the EP parameters between calls
- Enforce positivity of tau_tilde
- Stable computation of the EP moments for the Bernoulli likelihood
- Compute marginal in the GP model without directly inverting tau_tilde
Changes to improve the flexibility:
- Add parameter for maximum number of iterations
- Distinguish between alternated/nested mode
- Distinguish between sequential/parallel updates in EP
2017-06-01 11:59:04 +03:00
Max Zwiessele
113f84d6a7
cython in linalg
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did set cython to working if linalg_cython was importable.
2017-06-01 11:59:04 +03:00
mzwiessele
8c72eb2932
chg: pkg: CHANGELOG update
2017-06-01 11:59:04 +03:00
mzwiessele
335ecec584
Bump version: 1.6.0 → 1.6.1
2017-06-01 11:59:04 +03:00
mzwiessele
0ee2910391
fix: beiwang will add GMM in full
2017-06-01 11:59:04 +03:00
mzwiessele
cc93fe54af
chg: pkg: CHANGELOG update
2017-06-01 11:59:04 +03:00
mzwiessele
7b58495dc7
Bump version: 1.5.9 → 1.6.0
2017-06-01 11:59:04 +03:00
mzwiessele
011e3d6439
fix: kernel tests and variational tests
2017-06-01 11:59:04 +03:00
mzwiessele
703a136c8c
fix: plotting tests for new matplotlib
2017-06-01 11:59:04 +03:00
mzwiessele
970bd5399b
fix: model tests numpy integer error
2017-06-01 11:59:04 +03:00
mzwiessele
b8aabb97f8
fix: replot with new matplotlib
2017-06-01 11:59:04 +03:00
mzwiessele
1b9b1a95a6
fix: offline plotting workaround with squeezing arrays
2017-06-01 11:59:04 +03:00
mzwiessele
96cc0838eb
fix: Fixed numpy 1.12 indexing and shape preservation
2017-06-01 11:59:04 +03:00
Alex Feldstein
a7a2e53f6d
provide two classes for plotly plots to remove global variable
2017-06-01 11:59:04 +03:00
mzwiessele
a207d09d2b
fix: pkg: changelog
2017-06-01 11:59:04 +03:00
mzwiessele
450717c5c8
Bump version: 1.5.8 → 1.5.9
2017-06-01 11:59:04 +03:00
mzwiessele
9cacf46c18
chg: pkg: CHENGELOG update
2017-06-01 11:59:04 +03:00
mzwiessele
756b618ef4
Bump version: 1.5.7 → 1.5.8
2017-06-01 11:59:04 +03:00
mzwiessele
9eee68e831
fix: pkg: dim reduction simulation with different functions
2017-06-01 11:59:04 +03:00
Alex Feldstein
66bd0b6583
add offline plotting for plotly
2017-06-01 11:59:04 +03:00
esiivola
a5c06b195d
Added initial version of the refactored EP
2017-06-01 02:40:01 +03:00
esiivola
7d996e79e9
Added initial version of the refactored EP
2017-06-01 02:38:17 +03:00
esiivola
be192779a0
Added initial version of the refactored EP
2017-06-01 02:19:58 +03:00
Ruben Martinez-Cantin
d288341d55
Fix python 2-3 compatibility
2017-05-16 16:47:43 +02:00
mzwiessele
845168af3b
fix: pkg: CHANGELOG
2017-04-12 11:54:11 +01:00
mzwiessele
e554eeba64
Bump version: 1.6.1 → 1.6.2
2017-04-12 11:53:27 +01:00
mzwiessele
480aedb74a
fix: updated keywords
2017-04-12 11:53:05 +01:00
Max Zwiessele
a5ba3057ec
Merge pull request #491 from alexfeld/parallel_opt
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fix for parallel optimization
2017-04-12 11:28:46 +01:00
Zhenwen Dai
2f7ab3f5c7
Merge pull request #492 from pgmoren/devel
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We did some benchmarking on classification. These changes should be fine. Let's merge it in.
2017-03-27 13:26:27 +01:00
Max Zwiessele
cc4606beb6
Merge pull request #489 from SheffieldML/linalg_cython-1
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cython in linalg fix #458
2017-03-23 11:45:37 +00:00
Moreno
0c248e7520
Changes in EP/EPDTC to fix numerical issues and increase the flexibility of the inference.
...
Changes to avoid numerical issues and improve the performance:
- Keep value of the EP parameters between calls
- Enforce positivity of tau_tilde
- Stable computation of the EP moments for the Bernoulli likelihood
- Compute marginal in the GP model without directly inverting tau_tilde
Changes to improve the flexibility:
- Add parameter for maximum number of iterations
- Distinguish between alternated/nested mode
- Distinguish between sequential/parallel updates in EP
2017-03-22 13:40:06 +00:00
Alex Feldstein
4e8c95055c
fix in sparse_gp_mpi optimizer
2017-03-20 13:27:25 -04:00
Alex Feldstein
221f7f792f
fix for parallel optimization
2017-03-17 19:32:47 -04:00
Max Zwiessele
bc59dc4ee0
cython in linalg
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did set cython to working if linalg_cython was importable.
2017-03-10 08:05:36 +00:00
Max Zwiessele
627c878455
Merge pull request #486 from SheffieldML/deploy
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Merge pull request #471 from SheffieldML/devel
2017-03-02 14:07:42 +00:00
Max Zwiessele
013064fa41
Merge pull request #471 from SheffieldML/devel
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new version
2017-03-02 14:07:06 +00:00
mzwiessele
11d332566c
chg: pkg: CHANGELOG update
2017-02-28 10:04:47 +00:00
mzwiessele
6fe8c69e81
Bump version: 1.6.0 → 1.6.1
2017-02-28 10:04:36 +00:00
mzwiessele
67b497e5df
fix: beiwang will add GMM in full
2017-02-28 10:04:07 +00:00
mzwiessele
e9d302c87a
chg: pkg: CHANGELOG update
2017-02-28 08:44:52 +00:00
mzwiessele
019522be0d
Bump version: 1.5.9 → 1.6.0
2017-02-28 08:44:39 +00:00
mzwiessele
43bb5e3a1d
fix: kernel tests and variational tests
2017-02-28 08:41:33 +00:00
mzwiessele
920765bcce
fix: plotting tests for new matplotlib
2017-02-24 13:10:00 +00:00
