72 commits

Author	SHA1	Message	Date
Mike Croucher	79f4b26f4d	Fixed integer division for Python 3 compat	2015-02-28 12:41:23 +00:00
Mike Croucher	8c552c2509	Fixed string encoding for Python 3	2015-02-28 12:39:39 +00:00
Mike Croucher	82ea197972	Put weave import in a try block so it fails gracefullt in Py3	2015-02-27 15:39:10 +00:00
Mike Croucher	046bd3d955	Commented out cholupdate since it uses weave and appears not to be used	2015-02-26 16:55:17 +00:00
Mike Croucher	c6b43d91da	Exception fixes for Python 3 compat	2015-02-26 14:29:40 +00:00
Mike Croucher	c5b91e543a	Convert print to function for Python 3 compatibility	2015-02-26 09:03:04 +00:00
Mike Croucher	2ca24a88f5	More relative import fixes for Python 3 compatibility	2015-02-26 07:14:40 +00:00
Alan Saul	f690192384	Added logging for jitter so we know how much has been added and how many tries have been taken	2015-02-10 11:52:40 +00:00
Alan Saul	29d153e185	Bug in linalg jitchol!!!	2015-02-09 19:35:46 +00:00
Max Zwiessele	1e6ed9f873	[linalg] ppca with missing data removed	2014-11-11 09:56:36 +00:00
James Hensman	fd4404a11a	minor bugfix on windows (thanks NC)	2014-10-07 16:20:16 +01:00
James Hensman	f9b6e0991c	symmetrify now falls back gracefully to numpy if weave fails	2014-09-23 10:24:29 +01:00
mzwiessele	8c80fb9c52	[inference] less constant jitter, and jitter adjustements ... Conflicts: GPy/util/linalg.py	2014-07-22 09:26:20 -07:00
Max Zwiessele	1102fa3320	[linalg] fixed scipy 0.14 bugfix. sciy.linalg.lapack.dpotri was fixed to work right with lower=1, thus, the hack is gone now from GPy.util.linalg.dpotri, when using scipy 0.14 and higher	2014-06-09 09:28:40 -07:00
James Hensman	d20222a90b	reverting Maxs linalg changes	2014-06-04 15:43:03 +01:00
Max Zwiessele	38ed60385a	linalg had lowers missing for windows libraries to work correctly	2014-06-03 15:42:32 -07:00
Zhenwen Dai	06336bf0d4	switch psi2 statistics design	2014-05-06 16:30:17 +01:00
Max Zwiessele	321a75100c	finally added pca package again	2014-03-24 11:21:48 +00:00
Max Zwiessele	56d749ded8	indentation...	2014-03-04 17:31:10 +00:00
Neil Lawrence	339b5caa76	Part working version of sympy covariance with new params version.	2014-02-24 21:16:26 +00:00
Max Zwiessele	d0c563ff0a	added sparsegp with missing data	2014-02-18 15:52:33 +00:00
James Hensman	3375606039	lots of F-ordering nonsense. Seems to work though	2014-02-14 11:38:34 +00:00
Max Zwiessele	b2328c4f47	starting varDTC with uncertain inputs [not working]	2014-02-05 10:48:23 +00:00
Ricardo	064a57f851	lines that call matplotlib were commented	2014-01-28 13:43:33 +00:00
James Hensman	b9a51a2ab8	added PCA to linalg	2014-01-24 10:19:03 +00:00
James Hensman	28c899926a	merged (hard) the util from devel	2014-01-24 09:50:49 +00:00
Nicolò Fusi	6945ad7aa1	Seems to work on windows now ... not everything works yet, but I've identified the main issues. Still TODO: handle missing OMP libraries gracefully	2013-10-11 16:19:27 -07:00
James McMurray	aa5ebcbd8f	Fixed more errors in docs 2	2013-09-20 17:46:23 +01:00
James McMurray	be3880c0bd	Fixed docstring warnings - could still be mistakes	2013-09-20 13:38:20 +01:00
Ricardo	352a35522f	1 docstring line completed	2013-09-17 14:27:16 +01:00
Max Zwiessele	f2eb611e6a	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2013-06-07 13:35:37 +01:00
Max Zwiessele	924a319b98	catch linalg errors inside model and more sopihisticated non-pd checks	2013-06-07 13:34:45 +01:00
James Hensman	d5cb4ddfdf	fixed blaslib bug, I hope	2013-06-06 16:49:03 +01:00
Alan Saul	38c78dfbde	Removed overwriting_b in lapack	2013-06-06 15:02:19 +01:00
James Hensman	bd298dae9c	fixed lapack importing for old scipy version	2013-06-06 14:57:51 +01:00
Alan Saul	344d61db0c	Changed deprecation supression to 12	2013-06-06 14:51:04 +01:00
Alan Saul	0deb6e86c3	Fixing lapacks	2013-06-06 14:46:58 +01:00
Alan Saul	e587618339	Factored out lapack into utils so we can check version and give deprecation warnings	2013-06-06 14:04:14 +01:00
Max Zwiessele	2e5e8ac026	REFACTORING: model names, lowercase, classes uppercase	2013-06-05 13:02:03 +01:00
Alan Saul	97f3357b6d	Replaced Q by input_dim	2013-06-05 11:17:15 +01:00
Max Zwiessele	4eebf99bfb	REVERT a53690ab7f, flapack back substitued in	2013-05-31 12:09:11 +01:00
Max Zwiessele	43cd5ad50b	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2013-05-30 10:37:20 +01:00
Max Zwiessele	a53690ab7f	DeprecationWarning: Substituded all (\!) flapack occ. with lapack (scipy said so)	2013-05-30 10:37:03 +01:00
Andreas	3853721355	Fixed symmetrify for when C/F compiler doesn't work	2013-05-28 15:50:18 +01:00
James Hensman	58b206a245	enabled DSYR on feeble machines ... i.e. where numpy is compiled without proper blas linkage	2013-05-19 19:16:25 +01:00
Ricardo	2052463ba7	Explanation added to DSYR	2013-05-15 16:25:40 +01:00
James Hensman	350fa39685	generalised backsub_both_sides	2013-05-14 11:20:44 +01:00
James Hensman	c859687d43	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2013-05-13 17:23:54 +01:00
James Hensman	542759353b	minor changes to the symmetrify function	2013-05-13 17:23:49 +01:00
Nicolo Fusi	ccde6c421f	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2013-05-13 17:21:45 +01:00