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Author	SHA1	Message	Date
James Hensman	9011d8fe2f	some noodling around in the likelihoods	2013-12-10 14:51:11 -08:00
Nicolo Fusi	45f76cc532	removed print statements from config parser, commented out ODE kerns	2013-12-10 14:32:30 -08:00
Nicolo Fusi	b984acaa80	Merge branch 'devel'	2013-12-10 14:08:28 -08:00
Nicolo Fusi	ebd2752d5b	Merge branch 'devel'	2013-12-10 14:07:18 -08:00
James Hensman	d8a627c1d8	fixed bug introduced my merge	2013-12-10 12:17:59 -08:00
James Hensman	8d5fc8a2e2	merged in params	2013-12-10 11:56:35 -08:00
mu	9b32fd47ee	Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel	2013-12-10 17:12:23 +00:00
mu	bab477f149	ode UY	2013-12-10 17:07:37 +00:00
mu	cb36368d13	dk dparameter	2013-12-10 12:38:34 +00:00
Max Zwiessele	a3bf662fd3	array handling in plotting and weave	2013-12-09 00:19:37 +00:00
Max Zwiessele	e1bb3e508e	naming and pil changes	2013-12-07 18:45:24 +00:00
James Hensman	fed4134727	modified docstrings	2013-12-06 16:47:08 -08:00
James Hensman	e6593db781	adding empyy init file	2013-12-06 15:54:01 -08:00
James Hensman	ee68377f5e	more work on the posterior class	2013-12-06 11:48:32 -08:00
James Hensman	83a49f132a	Added the structure to posterior.py to enable... ... to enable computation from the posterior mean and variance, instead of the woodbury componnents This iss the first step in being able to use this structre for EP and the laplace approximation.	2013-12-06 09:50:01 -08:00
James Hensman	5ec64d2279	more massive and destructive changes everywhere	2013-12-05 15:09:31 -05:00
James Hensman	881800126f	many dramatic cahnges. at least it import without error.	2013-12-05 13:49:38 -05:00
James Hensman	7812a7dc7d	moved functional part of sparseGP to inference/dtcvar	2013-12-05 10:56:18 +00:00
James Hensman	3549a676a8	tidied up gp_base and gp	2013-12-04 20:12:40 +00:00
James Hensman	f5bae4450f	Lots of tidying in the inference section	2013-12-04 17:58:02 +00:00
Alan Saul	eba553fe2c	Fixed the numerical quadrature, won't work with large f unless normalized	2013-12-04 14:33:16 +00:00
Alan Saul	f8707c3918	Fixed lots of breaking tests, reduced step size for checkgrad to 1e-4 in tests (perhaps this should be global), added some missing attributes to data_resources.json	2013-12-04 12:44:13 +00:00
James Hensman	435cbbc421	adding exact gaussian inference	2013-12-04 12:02:30 +00:00
James Hensman	48c292d263	added some docstrings and the posterior class structure	2013-12-04 11:50:18 +00:00
James Hensman	326c74ef8a	messing wih he inference directory now	2013-12-04 11:34:14 +00:00
James Hensman	83a495645d	some more messing with the likelihood directory	2013-12-04 11:32:12 +00:00
James Hensman	daaad3c30c	first commit in new structure	2013-12-04 11:20:25 +00:00
Alan Saul	cb6c1dd0d2	Set warnings for truncated hessian, it has been noted that that by ... truncating we can have incorrect posteriors, though at convergence this should not be a problem, could be fixed by not using Cholsky as the decomposition as it cannot handle non-positive definite mats	2013-12-03 15:21:45 +00:00
Neil Lawrence	4a751fd2da	Added some more error checking for downloading datasets.	2013-11-30 11:02:42 +00:00
Neil Lawrence	e349c12cf0	Fixed some bugs in mocap.py where errors weren't being raised when file format was incorrect and made datasets.py check for 404 errors which previously were occuring silently ... shhhhh	2013-11-29 18:39:14 +00:00
Neil Lawrence	7c1c50cf55	Fixed bugs in cmu_mocap loader where cmu_url was missing and loading in mocap data twice in same session led to incorrect url through copy error.	2013-11-29 17:32:08 +00:00
Alan Saul	f26455f2b2	Fixed examples tests, started changing datasets code which has a few bugs	2013-11-29 15:45:18 +00:00
Alan Saul	9e6cc7ea6e	Minor changes to naming of signitures	2013-11-29 14:45:44 +00:00
Alan Saul	98074e1e6c	Changed more examples to accept optimize and plot	2013-11-29 14:40:31 +00:00
Alan Saul	0a36d98a71	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2013-11-29 14:21:10 +00:00
Alan Saul	3cd808cccc	Added optimize and plot for classification, non_gaussian and stochastic examples	2013-11-29 14:20:59 +00:00
Alan Saul	68ece19211	Fixed gp_base and svigp for sampling (doesn't use it but needs the arguments)	2013-11-29 14:20:33 +00:00
Alan Saul	b26c62f6af	Added constant to Z_tilde, now log likelihoods are equal!	2013-11-29 12:00:37 +00:00
Alan Saul	0a43329150	Changed some parameters of the laplace, tidied up examples	2013-11-28 15:23:39 +00:00
Max Zwiessele	1b5eed890a	documenting	2013-11-28 10:54:13 +00:00
Max Zwiessele	25635571af	added comments for models module and adjusted setup	2013-11-28 10:31:17 +00:00
Max Zwiessele	622f2e29aa	Merge branch 'naniny' into devel	2013-11-28 10:03:24 +00:00
Max Zwiessele	5809293c98	rename _models to models_modules to include in doc	2013-11-28 10:02:19 +00:00
James Hensman	123a3caea9	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2013-11-27 17:02:09 +00:00
James Hensman	c86981a110	some tidying in the regression examples	2013-11-27 17:02:04 +00:00
Max Zwiessele	50e9034a6d	dimensionality reduction examples updated with optimize, plot and verbose	2013-11-27 16:12:58 +00:00
Max Zwiessele	d0a9995c38	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2013-11-27 15:02:34 +00:00
Max Zwiessele	944703beff	dimensionality reduction example (oil) updated	2013-11-27 15:02:30 +00:00
James Hensman	eafcd50af5	changing the seed seems to fix Alan's bug.	2013-11-27 15:00:42 +00:00
James Hensman	0c3747dc4d	Fixed symmetry in checkgrad issue	2013-11-27 14:57:57 +00:00