673 commits

Author	SHA1	Message	Date
Zhenwen Dai	36d53f815c	merge ties branch into psi2	2014-06-23 14:36:28 +01:00
Zhenwen Dai	cf2bf3bbe2	var_dtc_parallel make YY.T speed up	2014-06-23 14:23:43 +01:00
mzwiessele	94bff66c7b	[optmimize] bugfix	2014-06-20 12:10:21 -07:00
mzwiessele	73d9118043	[whitespaces] & [opt] minor fix of optimizer, when Optimizer is provided (set model to self)	2014-06-20 10:28:32 -07:00
mzwiessele	eaa18e3512	[model] optimizer can now be an optimizer instance, instead of a string	2014-06-19 12:07:58 -07:00
mzwiessele	c62dd85418	[randomize] adjusted parameters to go into random generator right	2014-06-18 08:52:33 -07:00
Zhenwen Dai	695bad63c5	fix Linear kernel with SSGPLVM	2014-06-09 14:21:56 +01:00
James Hensman	0812a0e15c	Revert "Minor edits to reading Lee data in datasets.py" ... This reverts commit 730e229238.	2014-06-08 21:02:42 +01:00
Neil Lawrence	3003718ea9	Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel	2014-06-05 18:48:55 +01:00
Neil Lawrence	730e229238	Minor edits to reading Lee data in datasets.py	2014-06-04 11:21:25 +01:00
James Hensman	ed74a81732	editied whitespace	2014-05-30 09:22:43 +01:00
Zhenwen Dai	74b62ab3c3	merge the bug of fixing function	2014-05-29 10:29:18 +01:00
James Hensman	ac2d28e2fd	reverting the fixing behaviour. ... two reasons: 1) the new behaviour is confusing for new users. Either something is fixed, or it's not. 2) the fixing didn't work! things that should have been fixed were passed to the optimizer for optimization. If we really want to save keystrokes, consider this: m.foo.fix() m.foo.unfix() m.foo.constrain_positive() is the same as m.foo.fix() m.foo.constrain_positive() but the latter throws a warning.	2014-05-29 09:55:49 +01:00
mzwiessele	3525e45b2f	[copy] is now fully functional, only hierarchy observers will be copied and pickled	2014-05-23 11:11:21 +01:00
mzwiessele	9bf7e1baf6	[optimizer&fixing] optimizer has only one optimizer copy and fixing remembers old constraint	2014-05-22 12:44:50 +01:00
mzwiessele	5a2bc4863b	[optimizer] one copy for the optimizer in optimizer_array, use this instead of _set|get_params_transformed	2014-05-22 11:39:04 +01:00
Max Zwiessele	43ee8ce614	[reverts] some reverts, as one param etc does not work	2014-05-21 16:49:47 +01:00
Max Zwiessele	24a34aee95	[model] exactly two parameter copy in memory	2014-05-21 16:33:44 +01:00
Max Zwiessele	dc628f558a	[gp] output data is a copy now	2014-05-21 16:32:44 +01:00
Zhenwen Dai	52c0be1848	merge devel branch in	2014-05-21 10:38:34 +01:00
Zhenwen Dai	a2203179f6	[psi2] implement RBF cpu	2014-05-21 10:34:51 +01:00
Max Zwiessele	b520eb212c	[fixing] fixing now saves the old constraint	2014-05-20 16:39:52 +01:00
Max Zwiessele	c507cfe4ab	[index operations] added lookup for properties for a given index as dict <properties, subindex> for given index	2014-05-20 16:06:56 +01:00
Max Zwiessele	995de897b3	[core updates] first try to switch updates off and on. Use m.updates = False to switch updates off, and vice-versa	2014-05-20 14:48:53 +01:00
Max Zwiessele	01d6b91f90	[mrd] missing data implemented, and plotting better	2014-05-16 15:12:19 +01:00
Max Zwiessele	94c84a23a3	[mrd] plotting, init, inference etc.	2014-05-16 11:21:08 +01:00
Zhenwen Dai	17b6b94db3	Logistic transformation numerical robustness	2014-05-16 10:48:18 +01:00
Zhenwen Dai	4ec8f464e2	merge chagnes from devel	2014-05-15 18:02:33 +01:00
Max Zwiessele	dfdb1c24e6	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-05-15 14:06:04 +01:00
Max Zwiessele	58a05f37b7	[latentfunctioninference] superclass LatentFunctionInference added, which contains a call just before and just after optimization	2014-05-15 14:06:00 +01:00
Zhenwen Dai	3ee2dc920c	a little merge	2014-05-15 12:17:21 +01:00
Zhenwen Dai	dad476faf6	[ssgplvm] linear kernel	2014-05-15 11:43:29 +01:00
Max Zwiessele	02b5ee1e46	[parameterized] restructered a lot and finalized some stuff	2014-05-15 11:29:20 +01:00
Max Zwiessele	78ae67bd47	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-05-15 10:06:33 +01:00
mzwiessele	73f23c0a0d	[caching] renaming of helper methods to make intention clear	2014-05-14 13:39:48 +01:00
mzwiessele	5b8bd88acf	[indexing&memory] in memory view more efficient, catching some indexing errors	2014-05-14 11:38:00 +01:00
mzwiessele	8d6eed6010	[param] hierarchy traversal easier now	2014-05-14 08:53:56 +01:00
mzwiessele	442bc3f581	[paramcore] fix for traversal	2014-05-13 14:20:59 +01:00
mzwiessele	851e63476c	[pydot] build pydot with new observer list	2014-05-13 12:53:42 +01:00
mzwiessele	8ff4a42d1a	[param_array] doc	2014-05-13 09:32:58 +01:00
mzwiessele	4f627c904f	[variational] posterior object copies adjusted	2014-05-13 08:50:14 +01:00
Max Zwiessele	8531c4bff0	[params] indexing with boolean arrays switched off, rases proper error now	2014-05-12 16:23:01 +01:00
Max Zwiessele	c8da9602ec	[param] indexing now returns exactly like numpy arrays	2014-05-12 14:47:07 +01:00
Max Zwiessele	5b8b3b2256	[copy] handled hierarchy error for copying	2014-05-12 11:42:53 +01:00
Max Zwiessele	4eac8a5965	[param concatenation] allows assignmend more robustly	2014-05-09 14:07:34 +01:00
Zhenwen Dai	06336bf0d4	switch psi2 statistics design	2014-05-06 16:30:17 +01:00
James Hensman	5fac35b0fd	sparse GPs can now accept kerns for predicting	2014-05-06 13:05:26 +01:00
James Hensman	8fa1fcf1bd	Merge branch 'params' of github.com:SheffieldML/GPy into devel	2014-04-30 12:11:45 +01:00
James Hensman	f07bdad24e	added the ability for GPs to predict with a different kernel	2014-04-30 12:11:41 +01:00
Neil Lawrence	5405dbd1bc	Pre-devel-move check in	2014-04-29 15:43:35 +01:00