Commit graph

5694 commits

Author SHA1 Message Date
James Hensman
475eceb4dd Merge branch 'devel' of github.com:sheffieldml/GPy into devel 2015-02-10 14:23:11 +00:00
James Hensman
b499a870fb fixed a plotting bug for sliced plots 2015-02-10 14:23:03 +00:00
Alan Saul
f690192384 Added logging for jitter so we know how much has been added and how many tries have been taken 2015-02-10 11:52:40 +00:00
Alan Saul
952851de88 Bug in linalg jitchol!!! 2015-02-09 19:38:19 +00:00
Alan Saul
cfdd72fc72 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-02-09 19:36:08 +00:00
Alan Saul
29d153e185 Bug in linalg jitchol!!! 2015-02-09 19:35:46 +00:00
Daniel Beck
98c743d157 test + code change in gradients_X 2015-02-09 10:02:26 +11:00
Daniel Beck
fc8705104b a cleaner test 2015-02-09 09:41:21 +11:00
Daniel Beck
d6a56a6f0b changed operator.mul to np.multiply for consistency 2015-02-09 09:35:32 +11:00
Daniel Beck
8b4274339a added decorator that changes numpy invalid op warning to exception 2015-02-09 09:28:53 +11:00
Daniel Beck
1d2cbfe44a first attempt 2015-02-06 19:39:46 +11:00
Max Zwiessele
e967c95ef0 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2015-01-30 09:43:06 +00:00
Max Zwiessele
167e9c538d [var dtc] added code for additional covariates, not affecting normal procedures 2015-01-30 09:43:02 +00:00
Neil Lawrence
47cbdc265e Update __init__.py
Add inference to __init__.py
2015-01-21 08:15:52 +01:00
Neil Lawrence
8288240b7d Update hmc.py 2015-01-21 08:14:35 +01:00
Cristian Guarnizo
81c57140c4 Update __init__.py
Added EQ_ODE2.
2015-01-19 11:28:27 -05:00
Cristian Guarnizo
88f69312eb Create eq_ode2.py
Added ODE2 kernel for latent force models.
2015-01-19 11:27:07 -05:00
Max Zwiessele
57e941140c [opt] unified printing of status of optimization 2015-01-15 09:02:45 +00:00
Max Zwiessele
4deac0103c [transformations] bugfix for pickling 2015-01-15 09:02:22 +00:00
Max Zwiessele
7fbbdafdbf [opt] bugfix 2015-01-13 15:07:24 +00:00
Max Zwiessele
be3c8f5202 [verbose opt] messages would be overwritten when using ipython_notebooks, fixed 2015-01-13 14:29:28 +00:00
Max Zwiessele
07e85042ec [kern] added Fixed kern to import list in GPY.kern 2015-01-13 14:05:50 +00:00
Max Zwiessele
53dcd3f9fa [objective grads] undid the change, as this would lead to dramatic problems in reloading old models using the pickle module 2015-01-13 13:53:28 +00:00
Max Zwiessele
20eff02061 [objective grads] undid the change, as this would lead to dramatic problems in reloading old models using the pickle module 2015-01-13 13:46:49 +00:00
Max Zwiessele
17f42768da [progress] show progress of optimization using optimize(itpython_notebook=True) 2015-01-13 11:57:14 +00:00
Max Zwiessele
1c6cef44b6 [progress] show progress of optimization using optimize(itpython_notebook=True) 2015-01-13 11:49:40 +00:00
Max Zwiessele
b9b6ce91d8 [updates] now handled in observable, should have from the begining :/ 2015-01-13 09:45:11 +00:00
tjhgit
8d3308b76c Added spline kernel (from P. Hennig) to GPy
Had to modify the base_plots and model_plots.py, since I had troubles
installing GPy in anaconda on debian linux due to the dependency on
Tango. Why is Tango needed to represent colors that can also be typed in
Hex format thus eliminating further dependencies.
2015-01-13 00:10:40 +01:00
Max Zwiessele
cd8dd9ab98 [optimization prints] unified printouts for optimizers, added ipython_notebook flag for use in ipython notebooks 2015-01-12 15:43:33 +00:00
Max Zwiessele
869a5c4f92 [parent notification] is now priority -1000, instead of -inf 2015-01-12 13:17:34 +00:00
Max Zwiessele
e03d6d4f71 [model print] updates now shown in print out 2015-01-12 11:55:44 +00:00
Max Zwiessele
3aedf63966 [natural gradients] added natural gradients, usable but not analysed 2015-01-12 11:36:53 +00:00
Max Zwiessele
dff577d22b renamed opimizer methods to unobscure gradients and objective 2015-01-12 11:35:57 +00:00
Max Zwiessele
ec42011617 [parameterized] print outs for ipython notebook 2015-01-12 11:33:31 +00:00
Nicolo Fusi
98f632e92e Merge branch 'master' of github.com:SheffieldML/GPy 2015-01-10 12:49:31 -08:00
Nicolo Fusi
bd1fb56e6c re-implemented warpedGP for new release of GPy 2015-01-02 15:07:19 -08:00
Alan Saul
1b27337e7c SVI now working with minibatches 2014-12-22 15:40:49 +00:00
Alan Saul
a8b0d60c3e SVI now implemented without natural natural gradients or batches 2014-12-22 13:35:56 +00:00
James Hensman
b642360ede multi-outputted the svgp inference (buggy, probably) 2014-12-22 12:07:51 +00:00
Alan Saul
7ba2e2ed08 Added svgp in partially broken state ready for multiouputs 2014-12-22 12:00:16 +00:00
Alan Saul
935f2016db Fixed quadrature for bernoulli likelihood, started adding Gaussian likelihood derivatives for quadrature 2014-12-19 17:53:32 +00:00
James Hensman
2de2217473 svgp inference added -- not working yet 2014-12-19 16:48:40 +00:00
Max Zwiessele
35a33f94e8 [html print] more table based corrections for html printing 2014-12-05 16:23:50 +00:00
Max Zwiessele
3aa16d67fa Merge branch 'devel' 2014-12-05 11:13:45 +00:00
Max Zwiessele
f2127e17cb Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2014-12-05 11:13:21 +00:00
Max Zwiessele
0e0220921f [html repr] included css styling for html print outs 2014-12-05 11:13:18 +00:00
Zhenwen Dai
1da44d9d5c implement update_gradients_diag for MLP kernel 2014-12-04 14:22:58 +00:00
Zhenwen Dai
ecf463e886 implement update_gradients_diag for MLP kernel 2014-12-04 14:21:50 +00:00
Nicolo Fusi
c14aef948e fixed minor bug in sparse gp minibatch 2014-12-03 17:18:22 -08:00
Max Zwiessele
4fc006f45d [vardtc] sparse gplvm in bayesian gplvm minibatch 2014-12-03 08:35:41 +00:00