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4397 commits

Author SHA1 Message Date
Jayanth Koushik
46d3b6ce5c Don't override global cython config in tests 2018-02-15 14:04:47 -05:00
Jayanth Koushik
928559216c Refactor checking for cython availability 2017-11-16 20:29:49 -05:00
Jayanth Koushik
6605b736d8 Use correct cython check in kernel_tests.py 2017-10-23 16:22:42 -04:00
Jayanth Koushik
a7af12e6ea fix: dev: cython import errors 
This commit fixes issues observed in Windows where some
cython modules are successfully imported, and some are not.
This causes the global config cython.working to be inconsistent,
which causes import errors when unavailable cython modules
are tried to be imported (example
https://github.com/SheffieldML/GPy/issues/266). This commit uses
a separate flag for each module to fix the issue.
 2017-10-23 15:58:17 -04:00
Zhenwen Dai
754c67f71d Merge pull request #526 from msbauer/mlp_extended 
added extended version of MLP function
 2017-10-18 18:11:51 +01:00
msbauer
60e5034256 Fix random seed for reproducible results in tests 2017-10-12 13:15:09 +02:00
msbauer
ef14c7a7eb updated mapping test to pass gradient checks 2017-10-12 11:56:20 +02:00
Zhenwen Dai
6eccb3764b Try to fix the issue with model_tests 2017-10-11 16:06:22 +01:00
Zhenwen Dai
673405d203 Merge with new changes from devel 2017-10-11 14:28:32 +01:00
mzwiessele
f8c3611ae6 Bump version: 1.8.3 → 1.8.4 2017-10-06 13:59:20 +01:00
mzwiessele
0ddae6103b Bump version: 1.8.2 → 1.8.3 2017-10-02 16:04:53 +01:00
mzwiessele
8826ebeb8d fix: uniform prior instantiation 2017-10-02 16:04:44 +01:00
mzwiessele
00f9ca1650 Bump version: 1.8.1 → 1.8.2 2017-10-02 14:38:02 +01:00
mzwiessele
c7e3eedd30 fix: uniform prior tests 2017-10-02 14:36:23 +01:00
mzwiessele
28487a9551 fix: uniform prior can be positive and negative, depending on lower and upper bound 2017-10-02 11:47:25 +01:00
mzwiessele
5e261657a8 Bump version: 1.8.0 → 1.8.1 2017-10-02 10:13:39 +01:00
Max Zwiessele
3d38df94d8 Paramz 0.8 2017-10-02 09:40:47 +01:00
Max Zwiessele
01b85cd11e Paramz 0.8 2017-10-02 09:35:55 +01:00
Zhenwen Dai
c294cf715f the implementation of SVI-MOGP 2017-09-19 16:28:36 +01:00
Max Zwiessele
6cc13af8cd fix: naming of ard contribution in ARD plot 2017-09-18 10:05:37 +01:00
Chris Tomaszewski
c3d8ea2e0d fix: replacing np.power with np.square for efficiency 2017-09-13 04:54:25 -04:00
Chris Tomaszewski
cb4f05296f fix: slight modification to MLP mapping to reduce potential for numpy overflows and unnecessary computation 2017-09-12 18:04:18 -04:00
Moreno
e572bfb746 Basic framework for serializing GPy models 2017-09-11 12:18:01 +01:00
Zhenwen Dai
d529da3e6c Merge pull request #543 from icdishb/devel 
Merged in the changes about Input warping using Kumar warping.

Thanks for the contribution, Huibin!
 2017-09-11 12:06:30 +01:00
mzwiessele
838625271a Bump version: 1.7.7 → 1.8.0 2017-09-11 11:07:54 +01:00
Shen
e72f0b6c9b Input warping using Kumar warping 2017-09-08 15:10:40 +02:00
Zhenwen Dai
9e6eac1cf0 Merge pull request #527 from adhaka/ll-surv 
merged in the changes about Ll surv
 2017-09-07 11:08:13 +01:00
Akash Kumar Dhaka
8b24b492f1 some more merge conflicts resolved for syncing with the current devel branch of main GPy 2017-08-10 11:51:48 +03:00
Akash Kumar Dhaka
f0f1a183b0 merging with the gpy devel branch to be in sync with the latest code and make pull request again .. 2017-08-10 11:47:26 +03:00
Akash Kumar Dhaka
8c8008c2d3 bug fixes in test cases due to changes in api of ep functions.. 2017-08-10 11:14:40 +03:00
Siivola Eero
841ca66170 Robustified binomial likelihood 2017-08-10 11:14:40 +03:00
Siivola Eero
458b453613 minor bugfix 2017-08-10 11:14:40 +03:00
Siivola Eero
a9cdfad4b6 Fixed two small lbugs 2017-08-10 11:14:40 +03:00
Akash Kumar Dhaka
5d7e575c77 putting exact_inference_gradients again and calling in instead from ep_gradients which is the genreic method for calculating expected gradients used in ep 2017-08-10 11:14:40 +03:00
Akash Kumar Dhaka
8b621a409c commiting code for some changes to api for calculating ep_gradients, also fixing some issues with gaussian hermite quadrature, no we have both avaialable ... 2017-08-10 11:14:40 +03:00
Akash Kumar Dhaka
ae27e1225d adding file for gaussian-kronrod integration, test cases and calculating gradients of log marginal wrt theta-likelihood params 2017-08-10 11:14:40 +03:00
Akash Kumar Dhaka
19598cf807 fixing a typo-bug in the last commit for ep test case 2017-08-10 11:14:40 +03:00
Akash Kumar Dhaka
38597b1ede removing pods dependency and a few print commands 2017-08-10 11:14:40 +03:00
Akash Kumar Dhaka
69a81acff9 bug fix to prevent infinite loop because of incorrect stopping condition 2017-08-10 11:14:40 +03:00
Akash Kumar Dhaka
54f530a22b adding some test cases for EP.. more work needs to be done, these are some high level test cases .. 2017-08-10 11:14:40 +03:00
Moreno
255d97a917 Refactor EP and EPDTC 2017-08-10 11:14:40 +03:00
esiivola
7c4e2f21f8 Added initial version of the refactored EP 2017-08-10 11:14:40 +03:00
esiivola
0d06dc3b4e Added initial version of the refactored EP 2017-08-10 11:14:40 +03:00
esiivola
dfc5bd42dc Added initial version of the refactored EP 2017-08-10 11:14:40 +03:00
mzwiessele
b143e92b5c Bump version: 1.6.1 → 1.6.2 2017-08-10 11:14:40 +03:00
mzwiessele
000d832830 fix: updated keywords 2017-08-10 11:14:40 +03:00
Alex Feldstein
6f738bd2b4 fix in sparse_gp_mpi optimizer 2017-08-10 11:14:40 +03:00
Alex Feldstein
ef924eba6c fix for parallel optimization 2017-08-10 11:14:40 +03:00
Akash Kumar Dhaka
c83f8ffcbd bug fixes in test cases due to changes in api of ep functions.. 2017-08-07 20:06:13 +03:00
Siivola Eero
60d0e2f79d Robustified binomial likelihood 2017-08-07 18:07:18 +03:00