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51 commits

Author SHA1 Message Date
James Hensman
3549a676a8 tidied up gp_base and gp 2013-12-04 20:12:40 +00:00
Max Zwiessele
3316d29341 added gplbm and sparse gp to new parameterized structure 2013-11-06 11:40:54 +00:00
Max Zwiessele
6feb5dd2f1 adjusted parameters to report their changes 2013-11-03 13:58:15 +00:00
Max Zwiessele
780daac03e Merge branch 'devel' of github.com:SheffieldML/GPy into params 2013-10-11 16:52:54 +01:00
James Hensman
a59d980327 Nparam changes to num_params 2013-10-08 14:49:18 +01:00
Ricardo
46eca3bbdd Plots tidied up. 2013-10-07 12:41:20 +01:00
Max Zwiessele
4f56506aa6 Merge branch 'devel' into params 2013-10-07 08:20:29 +01:00
Ricardo
0ae9f9aafd Fixing W_columns and num_outputs nomenclature 2013-09-23 17:29:33 +01:00
James McMurray
aa5ebcbd8f Fixed more errors in docs 2 2013-09-20 17:46:23 +01:00
Max Zwiessele
c2d217e72c Merge branch 'devel' into params 
Conflicts:
	GPy/core/transformations.py
	GPy/kern/parts/kernpart.py
 2013-09-20 17:20:46 +01:00
Ricardo
c129b98b3b Merge branch 'devel' of github.com:SheffieldML/GPy into devel 
Conflicts:
	GPy/examples/classification.py
 2013-09-20 15:55:48 +01:00
James McMurray
5bf20f7bd7 Merge branch 'devel' of git://github.com/SheffieldML/GPy into devel 2013-09-20 14:29:33 +01:00
James McMurray
be3880c0bd Fixed docstring warnings - could still be mistakes 2013-09-20 13:38:20 +01:00
Ricardo
802835773f Merge branch 'devel' of github.com:SheffieldML/GPy into devel 2013-09-20 13:23:58 +01:00
Ricardo
a51af5b8c4 epsilon and power_ep now are parameters of update_likelihood. 2013-09-20 13:22:38 +01:00
James Hensman
7af2d62ee6 do_test_latents appears to be working now 2013-09-20 13:03:24 +01:00
Max Zwiessele
e5816e39dd parameterization changes take a while 2013-09-19 14:59:43 +01:00
Ricardo
99c3af63c4 Bug in prod-coreg kernels fixed, not in the most elegant way though 2013-09-18 17:57:17 +01:00
Ricardo
a1a8486bc3 Redundant code commented 2013-09-17 16:54:31 +01:00
Ricardo
6f8a1f81c4 random 2 bug neutralized... not fixed 2013-09-17 14:25:59 +01:00
Ricardo
603aa18482 Merge branch 'devel' of github.com:SheffieldML/GPy into devel 
Conflicts:
	GPy/examples/regression.py
	GPy/kern/constructors.py
	GPy/testing/kernel_tests.py
	GPy/util/multioutput.py
 2013-09-16 12:32:42 +01:00
Ricardo
1931e447f4 print_all function removed, print m works as before. 2013-09-16 12:24:37 +01:00
Neil Lawrence
dffa9541c2 Merged conflict of model.py 2013-09-14 20:05:42 +01:00
Neil Lawrence
00d335444d Changed kern.py so that X2 is correctly passed as None to the kern parts for dK_dX. Modified several kern parts so that dK_dX is correctly computed (factors of 2 missing). Removed spurious factors of 2 from gplvm, bcgplvm, sparse_gp and fitc code. 2013-09-14 20:02:40 +01:00
Ricardo
1bc9374717 linK2_functions2 merged 2013-09-13 18:09:59 +01:00
Ricardo
f8c9e6b982 Merge branch 'linK_functions2' into devel 
Conflicts:
	GPy/core/gp.py
	GPy/core/gp_base.py
	GPy/core/sparse_gp.py
	GPy/examples/regression.py
	GPy/kern/constructors.py
	GPy/kern/parts/coregionalise.py
	GPy/models/__init__.py
	GPy/models/sparse_gp_classification.py
	GPy/util/__init__.py
 2013-09-13 15:57:34 +01:00
Ricardo
62daa978d3 Likelihood gradients for heteroscedastic noise 2013-09-13 12:45:58 +01:00
Max Zwiessele
57eda0b77c added print m and print m.all differentiation 2013-09-02 11:53:45 +01:00
James Hensman
65c0c72361 fixed target slicing bug in prod kernel 2013-08-21 09:53:49 +01:00
Ricardo
4c7ebb6601 Multioutput models added 2013-08-02 20:10:02 +01:00
Max Zwiessele
5570e82943 constant jitter to Kmm, deleted some white kernels in models and examples 2013-08-02 16:36:51 +01:00
Ricardo
1c2a4c5c64 Changes to allow multiple output plotting 2013-07-31 19:00:54 +01:00
James Hensman
632dda8397 oops, that was silly bug. Don't code tired, kids. 
problem summing psi2 in sparse_GP
 2013-07-30 11:43:07 +01:00
James Hensman
b9c9f5ac83 some profilng and debugging in sparse_GP 2013-07-30 10:17:40 +01:00
Max Zwiessele
dcec9d2a25 reverted stupid merge error 2013-07-18 15:15:09 +01:00
Max Zwiessele
f5effb8cb6 added robust pickling, switches to old behaviour, if get/setstate not implemented 2013-06-26 16:48:48 +01:00
Max Zwiessele
1e06ca2d40 Merge branch 'devel' into pickle 2013-06-25 17:44:52 +01:00
Max Zwiessele
e869fcaf65 pcikling? 2013-06-25 17:43:42 +01:00
James Hensman
0c12641eca changes to the efficiency of the sparse GP when there are many outputs 2013-06-14 14:04:53 +01:00
James Hensman
fae84d6497 fixed a transpose bug in the sparse GP prediction 2013-06-06 16:27:39 +01:00
Alan Saul
7cf43baf05 Merged 2013-06-06 14:47:45 +01:00
James Hensman
5e4c24d652 psi1 is now the right way around 2013-06-06 14:38:48 +01:00
Alan Saul
e587618339 Factored out lapack into utils so we can check version and give deprecation warnings 2013-06-06 14:04:14 +01:00
Ricardo
8d8408dee0 _Xmean is now Xoffset and _Xstd is now _Xscale 2013-06-05 19:18:29 +01:00
Ricardo
616e8c9026 Minor changes 2013-06-05 18:01:53 +01:00
Max Zwiessele
b129e6a669 merged num_data conflicts 2013-06-05 16:21:54 +01:00
James Hensman
527586a012 lots of bugfixes after refactoring 2013-06-05 16:14:43 +01:00
Max Zwiessele
0490861099 kern params adapted: Nparams > num_params and fixes of input_dim 2013-06-05 16:14:30 +01:00
Max Zwiessele
db78b233b8 Nparams > num_params and Nparam_tranformed > num_params_transformed 2013-06-05 15:29:18 +01:00
James Hensman
56a4bc4e21 an assortment of fixes 2013-06-05 14:52:37 +01:00