2340 commits

Author	SHA1	Message	Date
Max Zwiessele	1102fa3320	[linalg] fixed scipy 0.14 bugfix. sciy.linalg.lapack.dpotri was fixed to work right with lower=1, thus, the hack is gone now from GPy.util.linalg.dpotri, when using scipy 0.14 and higher	2014-06-09 09:28:40 -07:00
James Hensman	322d0d6d01	re-doing the lee dataset	2014-06-08 21:06:29 +01:00
James Hensman	0812a0e15c	Revert "Minor edits to reading Lee data in datasets.py" ... This reverts commit 730e229238.	2014-06-08 21:02:42 +01:00
durrande	1dfe7ed0a8	fixed unnecessary warnings when using periodic kernels	2014-06-08 18:37:07 +02:00
Neil Lawrence	ec1b9190f5	Datasets.py updates should have been committed before.	2014-06-05 18:49:15 +01:00
Neil Lawrence	3003718ea9	Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel	2014-06-05 18:48:55 +01:00
James Hensman	d20222a90b	reverting Maxs linalg changes	2014-06-04 15:43:03 +01:00
Neil Lawrence	730e229238	Minor edits to reading Lee data in datasets.py	2014-06-04 11:21:25 +01:00
Max Zwiessele	38ed60385a	linalg had lowers missing for windows libraries to work correctly	2014-06-03 15:42:32 -07:00
Zhenwen Dai	2b5753e6f6	Merge branch 'devel' of github.com:SheffieldML/GPy into devel	2014-05-30 18:56:32 +01:00
Zhenwen Dai	6e30f3c6c3	[splitkern] support idx_p==0	2014-05-30 18:56:23 +01:00
James Hensman	2a69312aa0	Merge branc( 'devel' of github.com:SheffieldML/GPy into devel	2014-05-30 09:22:47 +01:00
James Hensman	ed74a81732	editied whitespace	2014-05-30 09:22:43 +01:00
Zhenwen Dai	47ba2542c2	minor changes	2014-05-29 17:11:26 +01:00
Zhenwen Dai	4c538efb64	DiffGenomeKern bug fix	2014-05-29 17:10:14 +01:00
Neil Lawrence	dd6f7c1f4c	Modified Spellman et al data load.	2014-05-29 16:57:01 +01:00
zhenwen	ea1326c8c8	[splitkern] some more changes	2014-05-29 14:54:11 +01:00
Zhenwen Dai	5f08152651	[splitkern] some additional implmentation	2014-05-29 14:03:59 +01:00
Zhenwen Dai	c2568d2e9f	[splitkern] bug fix	2014-05-29 13:21:14 +01:00
Zhenwen Dai	f9291fe7da	[splitkern] buf fix	2014-05-29 11:21:19 +01:00
Zhenwen Dai	74b62ab3c3	merge the bug of fixing function	2014-05-29 10:29:18 +01:00
Zhenwen Dai	988889247c	developing split kernel	2014-05-29 10:27:36 +01:00
Zhenwen Dai	627cf9c86c	developing split kernel	2014-05-29 10:13:16 +01:00
Neil Lawrence	0fde50f56d	Changes to configuration file set up: now uses defaults.cfg, installation.cfg and searches locally for .gpy_user.cfg in the users home directory.	2014-05-28 10:25:02 +01:00
Neil Lawrence	9ea236112e	Added CIFAR-10 data to data sets.	2014-05-27 16:27:27 +01:00
Neil Lawrence	e3b6d9c9c5	Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel	2014-05-24 15:31:50 +01:00
Neil Lawrence	de75d7dac1	New data sets	2014-05-24 15:31:42 +01:00
teodecampos	f84f3f4308	Fixed an assertion, it was checking the dimensionality of the input data matrix, rather than that of the labels.	2014-05-23 17:18:38 +01:00
mzwiessele	0252fae298	[bgplvm] do test latents updated for devel branch	2014-05-23 13:26:41 +01:00
mzwiessele	3525e45b2f	[copy] is now fully functional, only hierarchy observers will be copied and pickled	2014-05-23 11:11:21 +01:00
mzwiessele	96e1e13f7e	[dim_reduce examples] updated robot_wireless	2014-05-22 15:32:59 +01:00
mzwiessele	d6bf3b0d79	[dim_reduce examples] updated swiss roll	2014-05-22 15:25:26 +01:00
mzwiessele	fa750d4ba4	[dim_reduce examples] updated plotting of brendan and bgplvm_oil	2014-05-22 15:08:36 +01:00
mzwiessele	6534e6606d	[tests] added some unfix fix print and gradcheck tests, it basically just behaves as a user would do with a model	2014-05-22 12:56:02 +01:00
mzwiessele	c2e3bf5bce	[caching] catching key error, when individuum is already gone	2014-05-22 12:55:18 +01:00
mzwiessele	9bf7e1baf6	[optimizer&fixing] optimizer has only one optimizer copy and fixing remembers old constraint	2014-05-22 12:44:50 +01:00
mzwiessele	5a2bc4863b	[optimizer] one copy for the optimizer in optimizer_array, use this instead of _set|get_params_transformed	2014-05-22 11:39:04 +01:00
Max Zwiessele	43ee8ce614	[reverts] some reverts, as one param etc does not work	2014-05-21 16:49:47 +01:00
Max Zwiessele	6b2681d849	[caching] first things first	2014-05-21 16:40:57 +01:00
Max Zwiessele	24a34aee95	[model] exactly two parameter copy in memory	2014-05-21 16:33:44 +01:00
Max Zwiessele	dc628f558a	[gp] output data is a copy now	2014-05-21 16:32:44 +01:00
Max Zwiessele	156ba00719	[bgplvm&mrd] missing data greatly improved, still not there yet	2014-05-21 16:32:06 +01:00
Max Zwiessele	b520eb212c	[fixing] fixing now saves the old constraint	2014-05-20 16:39:52 +01:00
Max Zwiessele	c507cfe4ab	[index operations] added lookup for properties for a given index as dict <properties, subindex> for given index	2014-05-20 16:06:56 +01:00
Max Zwiessele	ef256223d1	[mrd] more control for init, some missing data adjustements, init greatly improved	2014-05-20 14:49:20 +01:00
Max Zwiessele	995de897b3	[core updates] first try to switch updates off and on. Use m.updates = False to switch updates off, and vice-versa	2014-05-20 14:48:53 +01:00
Max Zwiessele	1ebcee967a	[psi-stats] add kernel was missing a psi zero call	2014-05-20 14:47:57 +01:00
Max Zwiessele	76718a8fcc	[stationary] input_sensitiviy is now 1/(l**2)	2014-05-20 14:47:28 +01:00
Max Zwiessele	533e5fb744	[datasets] delete packed data in hapmap dataset	2014-05-20 14:46:29 +01:00
Max Zwiessele	99699e9e02	[vardtc missing data] can handle non broadcastable selections	2014-05-20 14:46:03 +01:00