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Max Zwiessele 2016-04-08 08:18:37 +01:00
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118
doc/source/GPy.core.parameterization.rst
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GPy.core.parameterization package
=================================
Submodules
----------
GPy.core.parameterization.domains module
----------------------------------------
.. automodule:: GPy.core.parameterization.domains
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.index_operations module
-------------------------------------------------
.. automodule:: GPy.core.parameterization.index_operations
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.lists_and_dicts module
------------------------------------------------
.. automodule:: GPy.core.parameterization.lists_and_dicts
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.observable module
-------------------------------------------
.. automodule:: GPy.core.parameterization.observable
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.observable_array module
-------------------------------------------------
.. automodule:: GPy.core.parameterization.observable_array
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.param module
--------------------------------------
.. automodule:: GPy.core.parameterization.param
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.parameter_core module
-----------------------------------------------
.. automodule:: GPy.core.parameterization.parameter_core
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.parameterized module
----------------------------------------------
.. automodule:: GPy.core.parameterization.parameterized
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.priors module
---------------------------------------
.. automodule:: GPy.core.parameterization.priors
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.ties_and_remappings module
----------------------------------------------------
.. automodule:: GPy.core.parameterization.ties_and_remappings
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.transformations module
------------------------------------------------
.. automodule:: GPy.core.parameterization.transformations
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.updateable module
-------------------------------------------
.. automodule:: GPy.core.parameterization.updateable
:members:
:undoc-members:
:show-inheritance:
GPy.core.parameterization.variational module
--------------------------------------------
.. automodule:: GPy.core.parameterization.variational
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.core.parameterization
:members:
:undoc-members:
:show-inheritance:

85
doc/source/GPy.core.rst
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GPy.core package
================
Subpackages
-----------
.. toctree::
GPy.core.parameterization
Submodules
----------
GPy.core.gp module
------------------
.. automodule:: GPy.core.gp
:members:
:undoc-members:
:show-inheritance:
GPy.core.mapping module
-----------------------
.. automodule:: GPy.core.mapping
:members:
:undoc-members:
:show-inheritance:
GPy.core.model module
---------------------
.. automodule:: GPy.core.model
:members:
:undoc-members:
:show-inheritance:
GPy.core.sparse_gp module
-------------------------
.. automodule:: GPy.core.sparse_gp
:members:
:undoc-members:
:show-inheritance:
GPy.core.sparse_gp_mpi module
-----------------------------
.. automodule:: GPy.core.sparse_gp_mpi
:members:
:undoc-members:
:show-inheritance:
GPy.core.svgp module
--------------------
.. automodule:: GPy.core.svgp
:members:
:undoc-members:
:show-inheritance:
GPy.core.symbolic module
------------------------
.. automodule:: GPy.core.symbolic
:members:
:undoc-members:
:show-inheritance:
GPy.core.verbose_optimization module
------------------------------------
.. automodule:: GPy.core.verbose_optimization
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.core
:members:
:undoc-members:
:show-inheritance:

54
doc/source/GPy.examples.rst
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GPy.examples package
====================
Submodules
----------
GPy.examples.classification module
----------------------------------
.. automodule:: GPy.examples.classification
:members:
:undoc-members:
:show-inheritance:
GPy.examples.coreg_example module
---------------------------------
.. automodule:: GPy.examples.coreg_example
:members:
:undoc-members:
:show-inheritance:
GPy.examples.dimensionality_reduction module
--------------------------------------------
.. automodule:: GPy.examples.dimensionality_reduction
:members:
:undoc-members:
:show-inheritance:
GPy.examples.non_gaussian module
--------------------------------
.. automodule:: GPy.examples.non_gaussian
:members:
:undoc-members:
:show-inheritance:
GPy.examples.regression module
------------------------------
.. automodule:: GPy.examples.regression
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.examples
:members:
:undoc-members:
:show-inheritance:

102
doc/source/GPy.inference.latent_function_inference.rst
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GPy.inference.latent_function_inference package
===============================================
Submodules
----------
GPy.inference.latent_function_inference.dtc module
--------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.dtc
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.exact_gaussian_inference module
-----------------------------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.exact_gaussian_inference
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.expectation_propagation module
----------------------------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.expectation_propagation
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.fitc module
---------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.fitc
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.inferenceX module
---------------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.inferenceX
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.laplace module
------------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.laplace
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.posterior module
--------------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.posterior
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.svgp module
---------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.svgp
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.var_dtc module
------------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.var_dtc
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.var_dtc_parallel module
---------------------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.var_dtc_parallel
:members:
:undoc-members:
:show-inheritance:
GPy.inference.latent_function_inference.var_gauss module
--------------------------------------------------------
.. automodule:: GPy.inference.latent_function_inference.var_gauss
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.inference.latent_function_inference
:members:
:undoc-members:
:show-inheritance:

30
doc/source/GPy.inference.mcmc.rst
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GPy.inference.mcmc package
==========================
Submodules
----------
GPy.inference.mcmc.hmc module
-----------------------------
.. automodule:: GPy.inference.mcmc.hmc
:members:
:undoc-members:
:show-inheritance:
GPy.inference.mcmc.samplers module
----------------------------------
.. automodule:: GPy.inference.mcmc.samplers
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.inference.mcmc
:members:
:undoc-members:
:show-inheritance:

54
doc/source/GPy.inference.optimization.rst
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GPy.inference.optimization package
==================================
Submodules
----------
GPy.inference.optimization.conjugate_gradient_descent module
------------------------------------------------------------
.. automodule:: GPy.inference.optimization.conjugate_gradient_descent
:members:
:undoc-members:
:show-inheritance:
GPy.inference.optimization.gradient_descent_update_rules module
---------------------------------------------------------------
.. automodule:: GPy.inference.optimization.gradient_descent_update_rules
:members:
:undoc-members:
:show-inheritance:
GPy.inference.optimization.optimization module
----------------------------------------------
.. automodule:: GPy.inference.optimization.optimization
:members:
:undoc-members:
:show-inheritance:
GPy.inference.optimization.scg module
-------------------------------------
.. automodule:: GPy.inference.optimization.scg
:members:
:undoc-members:
:show-inheritance:
GPy.inference.optimization.stochastics module
---------------------------------------------
.. automodule:: GPy.inference.optimization.stochastics
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.inference.optimization
:members:
:undoc-members:
:show-inheritance:

19
doc/source/GPy.inference.rst
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GPy.inference package
=====================
Subpackages
-----------
.. toctree::
GPy.inference.latent_function_inference
GPy.inference.mcmc
GPy.inference.optimization
Module contents
---------------
.. automodule:: GPy.inference
:members:
:undoc-members:
:show-inheritance:

17
doc/source/GPy.kern.rst
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GPy.kern package
================
Subpackages
-----------
.. toctree::
GPy.kern.src
Module contents
---------------
.. automodule:: GPy.kern
:members:
:undoc-members:
:show-inheritance:

70
doc/source/GPy.kern.src.psi_comp.rst
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GPy.kern.src.psi_comp package
=============================
Submodules
----------
GPy.kern.src.psi_comp.gaussherm module
--------------------------------------
.. automodule:: GPy.kern.src.psi_comp.gaussherm
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.psi_comp.linear_psi_comp module
--------------------------------------------
.. automodule:: GPy.kern.src.psi_comp.linear_psi_comp
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.psi_comp.rbf_psi_comp module
-----------------------------------------
.. automodule:: GPy.kern.src.psi_comp.rbf_psi_comp
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.psi_comp.rbf_psi_gpucomp module
--------------------------------------------
.. automodule:: GPy.kern.src.psi_comp.rbf_psi_gpucomp
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.psi_comp.sslinear_psi_comp module
----------------------------------------------
.. automodule:: GPy.kern.src.psi_comp.sslinear_psi_comp
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.psi_comp.ssrbf_psi_comp module
-------------------------------------------
.. automodule:: GPy.kern.src.psi_comp.ssrbf_psi_comp
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.psi_comp.ssrbf_psi_gpucomp module
----------------------------------------------
.. automodule:: GPy.kern.src.psi_comp.ssrbf_psi_gpucomp
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.kern.src.psi_comp
:members:
:undoc-members:
:show-inheritance:

237
doc/source/GPy.kern.src.rst
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GPy.kern.src package
====================
Subpackages
-----------
.. toctree::
GPy.kern.src.psi_comp
Submodules
----------
GPy.kern.src.ODE_UY module
--------------------------
.. automodule:: GPy.kern.src.ODE_UY
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.ODE_UYC module
---------------------------
.. automodule:: GPy.kern.src.ODE_UYC
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.ODE_st module
--------------------------
.. automodule:: GPy.kern.src.ODE_st
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.ODE_t module
-------------------------
.. automodule:: GPy.kern.src.ODE_t
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.add module
-----------------------
.. automodule:: GPy.kern.src.add
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.basis_funcs module
-------------------------------
.. automodule:: GPy.kern.src.basis_funcs
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.brownian module
----------------------------
.. automodule:: GPy.kern.src.brownian
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.coregionalize module
---------------------------------
.. automodule:: GPy.kern.src.coregionalize
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.coregionalize_cython module
----------------------------------------
.. automodule:: GPy.kern.src.coregionalize_cython
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.eq_ode2 module
---------------------------
.. automodule:: GPy.kern.src.eq_ode2
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.independent_outputs module
---------------------------------------
.. automodule:: GPy.kern.src.independent_outputs
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.kern module
------------------------
.. automodule:: GPy.kern.src.kern
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.kernel_slice_operations module
-------------------------------------------
.. automodule:: GPy.kern.src.kernel_slice_operations
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.linear module
--------------------------
.. automodule:: GPy.kern.src.linear
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.mlp module
-----------------------
.. automodule:: GPy.kern.src.mlp
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.periodic module
----------------------------
.. automodule:: GPy.kern.src.periodic
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.poly module
------------------------
.. automodule:: GPy.kern.src.poly
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.prod module
------------------------
.. automodule:: GPy.kern.src.prod
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.rbf module
-----------------------
.. automodule:: GPy.kern.src.rbf
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.spline module
--------------------------
.. automodule:: GPy.kern.src.spline
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.splitKern module
-----------------------------
.. automodule:: GPy.kern.src.splitKern
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.standard_periodic module
-------------------------------------
.. automodule:: GPy.kern.src.standard_periodic
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.static module
--------------------------
.. automodule:: GPy.kern.src.static
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.stationary module
------------------------------
.. automodule:: GPy.kern.src.stationary
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.stationary_cython module
-------------------------------------
.. automodule:: GPy.kern.src.stationary_cython
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.symbolic module
----------------------------
.. automodule:: GPy.kern.src.symbolic
:members:
:undoc-members:
:show-inheritance:
GPy.kern.src.trunclinear module
-------------------------------
.. automodule:: GPy.kern.src.trunclinear
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.kern.src
:members:
:undoc-members:
:show-inheritance:

94
doc/source/GPy.likelihoods.rst
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GPy.likelihoods package
=======================
Submodules
----------
GPy.likelihoods.bernoulli module
--------------------------------
.. automodule:: GPy.likelihoods.bernoulli
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.binomial module
-------------------------------
.. automodule:: GPy.likelihoods.binomial
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.exponential module
----------------------------------
.. automodule:: GPy.likelihoods.exponential
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.gamma module
----------------------------
.. automodule:: GPy.likelihoods.gamma
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.gaussian module
-------------------------------
.. automodule:: GPy.likelihoods.gaussian
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.likelihood module
---------------------------------
.. automodule:: GPy.likelihoods.likelihood
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.link_functions module
-------------------------------------
.. automodule:: GPy.likelihoods.link_functions
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.mixed_noise module
----------------------------------
.. automodule:: GPy.likelihoods.mixed_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.poisson module
------------------------------
.. automodule:: GPy.likelihoods.poisson
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.student_t module
--------------------------------
.. automodule:: GPy.likelihoods.student_t
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.likelihoods
:members:
:undoc-members:
:show-inheritance:

78
doc/source/GPy.mappings.rst
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GPy.mappings package
====================
Submodules
----------
GPy.mappings.additive module
----------------------------
.. automodule:: GPy.mappings.additive
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.compound module
----------------------------
.. automodule:: GPy.mappings.compound
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.constant module
----------------------------
.. automodule:: GPy.mappings.constant
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.identity module
----------------------------
.. automodule:: GPy.mappings.identity
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.kernel module
--------------------------
.. automodule:: GPy.mappings.kernel
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.linear module
--------------------------
.. automodule:: GPy.mappings.linear
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.mlp module
-----------------------
.. automodule:: GPy.mappings.mlp
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.piecewise_linear module
------------------------------------
.. automodule:: GPy.mappings.piecewise_linear
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.mappings
:members:
:undoc-members:
:show-inheritance:

198
doc/source/GPy.models.rst
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GPy.models package
==================
Submodules
----------
GPy.models.bayesian_gplvm module
--------------------------------
.. automodule:: GPy.models.bayesian_gplvm
:members:
:undoc-members:
:show-inheritance:
GPy.models.bayesian_gplvm_minibatch module
------------------------------------------
.. automodule:: GPy.models.bayesian_gplvm_minibatch
:members:
:undoc-members:
:show-inheritance:
GPy.models.bcgplvm module
-------------------------
.. automodule:: GPy.models.bcgplvm
:members:
:undoc-members:
:show-inheritance:
GPy.models.dpgplvm module
-------------------------
.. automodule:: GPy.models.dpgplvm
:members:
:undoc-members:
:show-inheritance:
GPy.models.gp_classification module
-----------------------------------
.. automodule:: GPy.models.gp_classification
:members:
:undoc-members:
:show-inheritance:
GPy.models.gp_coregionalized_regression module
----------------------------------------------
.. automodule:: GPy.models.gp_coregionalized_regression
:members:
:undoc-members:
:show-inheritance:
GPy.models.gp_heteroscedastic_regression module
-----------------------------------------------
.. automodule:: GPy.models.gp_heteroscedastic_regression
:members:
:undoc-members:
:show-inheritance:
GPy.models.gp_kronecker_gaussian_regression module
--------------------------------------------------
.. automodule:: GPy.models.gp_kronecker_gaussian_regression
:members:
:undoc-members:
:show-inheritance:
GPy.models.gp_regression module
-------------------------------
.. automodule:: GPy.models.gp_regression
:members:
:undoc-members:
:show-inheritance:
GPy.models.gp_var_gauss module
------------------------------
.. automodule:: GPy.models.gp_var_gauss
:members:
:undoc-members:
:show-inheritance:
GPy.models.gplvm module
-----------------------
.. automodule:: GPy.models.gplvm
:members:
:undoc-members:
:show-inheritance:
GPy.models.gradient_checker module
----------------------------------
.. automodule:: GPy.models.gradient_checker
:members:
:undoc-members:
:show-inheritance:
GPy.models.mrd module
---------------------
.. automodule:: GPy.models.mrd
:members:
:undoc-members:
:show-inheritance:
GPy.models.one_vs_all_classification module
-------------------------------------------
.. automodule:: GPy.models.one_vs_all_classification
:members:
:undoc-members:
:show-inheritance:
GPy.models.one_vs_all_sparse_classification module
--------------------------------------------------
.. automodule:: GPy.models.one_vs_all_sparse_classification
:members:
:undoc-members:
:show-inheritance:
GPy.models.sparse_gp_classification module
------------------------------------------
.. automodule:: GPy.models.sparse_gp_classification
:members:
:undoc-members:
:show-inheritance:
GPy.models.sparse_gp_coregionalized_regression module
-----------------------------------------------------
.. automodule:: GPy.models.sparse_gp_coregionalized_regression
:members:
:undoc-members:
:show-inheritance:
GPy.models.sparse_gp_minibatch module
-------------------------------------
.. automodule:: GPy.models.sparse_gp_minibatch
:members:
:undoc-members:
:show-inheritance:
GPy.models.sparse_gp_regression module
--------------------------------------
.. automodule:: GPy.models.sparse_gp_regression
:members:
:undoc-members:
:show-inheritance:
GPy.models.sparse_gplvm module
------------------------------
.. automodule:: GPy.models.sparse_gplvm
:members:
:undoc-members:
:show-inheritance:
GPy.models.ss_gplvm module
--------------------------
.. automodule:: GPy.models.ss_gplvm
:members:
:undoc-members:
:show-inheritance:
GPy.models.ss_mrd module
------------------------
.. automodule:: GPy.models.ss_mrd
:members:
:undoc-members:
:show-inheritance:
GPy.models.warped_gp module
---------------------------
.. automodule:: GPy.models.warped_gp
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.models
:members:
:undoc-members:
:show-inheritance:

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doc/source/GPy.plotting.gpy_plot.rst
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GPy.plotting.gpy_plot package
=============================
Submodules
----------
GPy.plotting.gpy_plot.data_plots module
---------------------------------------
.. automodule:: GPy.plotting.gpy_plot.data_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.gpy_plot.gp_plots module
-------------------------------------
.. automodule:: GPy.plotting.gpy_plot.gp_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.gpy_plot.inference_plots module
--------------------------------------------
.. automodule:: GPy.plotting.gpy_plot.inference_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.gpy_plot.kernel_plots module
-----------------------------------------
.. automodule:: GPy.plotting.gpy_plot.kernel_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.gpy_plot.latent_plots module
-----------------------------------------
.. automodule:: GPy.plotting.gpy_plot.latent_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.gpy_plot.plot_util module
--------------------------------------
.. automodule:: GPy.plotting.gpy_plot.plot_util
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.plotting.gpy_plot
:members:
:undoc-members:
:show-inheritance:

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doc/source/GPy.plotting.matplot_dep.controllers.rst
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GPy.plotting.matplot_dep.controllers package
============================================
Submodules
----------
GPy.plotting.matplot_dep.controllers.axis_event_controller module
-----------------------------------------------------------------
.. automodule:: GPy.plotting.matplot_dep.controllers.axis_event_controller
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.controllers.imshow_controller module
-------------------------------------------------------------
.. automodule:: GPy.plotting.matplot_dep.controllers.imshow_controller
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.plotting.matplot_dep.controllers
:members:
:undoc-members:
:show-inheritance:

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GPy.plotting.matplot_dep package
================================
Subpackages
-----------
.. toctree::
GPy.plotting.matplot_dep.controllers
Submodules
----------
GPy.plotting.matplot_dep.defaults module
----------------------------------------
.. automodule:: GPy.plotting.matplot_dep.defaults
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.img_plots module
-----------------------------------------
.. automodule:: GPy.plotting.matplot_dep.img_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.kernel_plots module
--------------------------------------------
.. automodule:: GPy.plotting.matplot_dep.kernel_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.mapping_plots module
---------------------------------------------
.. automodule:: GPy.plotting.matplot_dep.mapping_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.maps module
------------------------------------
.. automodule:: GPy.plotting.matplot_dep.maps
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.plot_definitions module
------------------------------------------------
.. automodule:: GPy.plotting.matplot_dep.plot_definitions
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.priors_plots module
--------------------------------------------
.. automodule:: GPy.plotting.matplot_dep.priors_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.ssgplvm module
---------------------------------------
.. automodule:: GPy.plotting.matplot_dep.ssgplvm
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.svig_plots module
------------------------------------------
.. automodule:: GPy.plotting.matplot_dep.svig_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.util module
------------------------------------
.. automodule:: GPy.plotting.matplot_dep.util
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.variational_plots module
-------------------------------------------------
.. automodule:: GPy.plotting.matplot_dep.variational_plots
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.matplot_dep.visualize module
-----------------------------------------
.. automodule:: GPy.plotting.matplot_dep.visualize
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.plotting.matplot_dep
:members:
:undoc-members:
:show-inheritance:

30
doc/source/GPy.plotting.plotly_dep.rst
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GPy.plotting.plotly_dep package
===============================
Submodules
----------
GPy.plotting.plotly_dep.defaults module
---------------------------------------
.. automodule:: GPy.plotting.plotly_dep.defaults
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.plotly_dep.plot_definitions module
-----------------------------------------------
.. automodule:: GPy.plotting.plotly_dep.plot_definitions
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.plotting.plotly_dep
:members:
:undoc-members:
:show-inheritance:

39
doc/source/GPy.plotting.rst
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GPy.plotting package
====================
Subpackages
-----------
.. toctree::
GPy.plotting.gpy_plot
GPy.plotting.matplot_dep
GPy.plotting.plotly_dep
Submodules
----------
GPy.plotting.Tango module
-------------------------
.. automodule:: GPy.plotting.Tango
:members:
:undoc-members:
:show-inheritance:
GPy.plotting.abstract_plotting_library module
---------------------------------------------
.. automodule:: GPy.plotting.abstract_plotting_library
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.plotting
:members:
:undoc-members:
:show-inheritance:

26
doc/source/GPy.rst
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GPy package
===========
Subpackages
-----------
.. toctree::
GPy.core
GPy.examples
GPy.inference
GPy.kern
GPy.likelihoods
GPy.mappings
GPy.models
GPy.plotting
GPy.testing
GPy.util
Module contents
---------------
.. automodule:: GPy
:members:
:undoc-members:
:show-inheritance:

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GPy.testing package
===================
Submodules
----------
GPy.testing.bgplvm_minibatch_tests module
-----------------------------------------
.. automodule:: GPy.testing.bgplvm_minibatch_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.cacher_tests module
-------------------------------
.. automodule:: GPy.testing.cacher_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.cython_tests module
-------------------------------
.. automodule:: GPy.testing.cython_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.examples_tests module
---------------------------------
.. automodule:: GPy.testing.examples_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.fitc module
-----------------------
.. automodule:: GPy.testing.fitc
:members:
:undoc-members:
:show-inheritance:
GPy.testing.gp_tests module
---------------------------
.. automodule:: GPy.testing.gp_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.index_operations_tests module
-----------------------------------------
.. automodule:: GPy.testing.index_operations_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.inference_tests module
----------------------------------
.. automodule:: GPy.testing.inference_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.kernel_tests module
-------------------------------
.. automodule:: GPy.testing.kernel_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.likelihood_tests module
-----------------------------------
.. automodule:: GPy.testing.likelihood_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.linalg_test module
------------------------------
.. automodule:: GPy.testing.linalg_test
:members:
:undoc-members:
:show-inheritance:
GPy.testing.link_function_tests module
--------------------------------------
.. automodule:: GPy.testing.link_function_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.mapping_tests module
--------------------------------
.. automodule:: GPy.testing.mapping_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.meanfunc_tests module
---------------------------------
.. automodule:: GPy.testing.meanfunc_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.misc_tests module
-----------------------------
.. automodule:: GPy.testing.misc_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.model_tests module
------------------------------
.. automodule:: GPy.testing.model_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.mpi_tests module
----------------------------
.. automodule:: GPy.testing.mpi_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.observable_tests module
-----------------------------------
.. automodule:: GPy.testing.observable_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.parameterized_tests module
--------------------------------------
.. automodule:: GPy.testing.parameterized_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.pickle_tests module
-------------------------------
.. automodule:: GPy.testing.pickle_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.plotting_tests module
---------------------------------
.. automodule:: GPy.testing.plotting_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.prior_tests module
------------------------------
.. automodule:: GPy.testing.prior_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.rv_transformation_tests module
------------------------------------------
.. automodule:: GPy.testing.rv_transformation_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.svgp_tests module
-----------------------------
.. automodule:: GPy.testing.svgp_tests
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.testing
:members:
:undoc-members:
:show-inheritance:

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GPy.util package
================
Submodules
----------
GPy.util.block_matrices module
------------------------------
.. automodule:: GPy.util.block_matrices
:members:
:undoc-members:
:show-inheritance:
GPy.util.caching module
-----------------------
.. automodule:: GPy.util.caching
:members:
:undoc-members:
:show-inheritance:
GPy.util.choleskies module
--------------------------
.. automodule:: GPy.util.choleskies
:members:
:undoc-members:
:show-inheritance:
GPy.util.choleskies_cython module
---------------------------------
.. automodule:: GPy.util.choleskies_cython
:members:
:undoc-members:
:show-inheritance:
GPy.util.classification module
------------------------------
.. automodule:: GPy.util.classification
:members:
:undoc-members:
:show-inheritance:
GPy.util.config module
----------------------
.. automodule:: GPy.util.config
:members:
:undoc-members:
:show-inheritance:
GPy.util.datasets module
------------------------
.. automodule:: GPy.util.datasets
:members:
:undoc-members:
:show-inheritance:
GPy.util.debug module
---------------------
.. automodule:: GPy.util.debug
:members:
:undoc-members:
:show-inheritance:
GPy.util.decorators module
--------------------------
.. automodule:: GPy.util.decorators
:members:
:undoc-members:
:show-inheritance:
GPy.util.diag module
--------------------
.. automodule:: GPy.util.diag
:members:
:undoc-members:
:show-inheritance:
GPy.util.functions module
-------------------------
.. automodule:: GPy.util.functions
:members:
:undoc-members:
:show-inheritance:
GPy.util.gpu_init module
------------------------
.. automodule:: GPy.util.gpu_init
:members:
:undoc-members:
:show-inheritance:
GPy.util.initialization module
------------------------------
.. automodule:: GPy.util.initialization
:members:
:undoc-members:
:show-inheritance:
GPy.util.linalg module
----------------------
.. automodule:: GPy.util.linalg
:members:
:undoc-members:
:show-inheritance:
GPy.util.linalg_cython module
-----------------------------
.. automodule:: GPy.util.linalg_cython
:members:
:undoc-members:
:show-inheritance:
GPy.util.linalg_gpu module
--------------------------
.. automodule:: GPy.util.linalg_gpu
:members:
:undoc-members:
:show-inheritance:
GPy.util.ln_diff_erfs module
----------------------------
.. automodule:: GPy.util.ln_diff_erfs
:members:
:undoc-members:
:show-inheritance:
GPy.util.misc module
--------------------
.. automodule:: GPy.util.misc
:members:
:undoc-members:
:show-inheritance:
GPy.util.mocap module
---------------------
.. automodule:: GPy.util.mocap
:members:
:undoc-members:
:show-inheritance:
GPy.util.multioutput module
---------------------------
.. automodule:: GPy.util.multioutput
:members:
:undoc-members:
:show-inheritance:
GPy.util.netpbmfile module
--------------------------
.. automodule:: GPy.util.netpbmfile
:members:
:undoc-members:
:show-inheritance:
GPy.util.normalizer module
--------------------------
.. automodule:: GPy.util.normalizer
:members:
:undoc-members:
:show-inheritance:
GPy.util.parallel module
------------------------
.. automodule:: GPy.util.parallel
:members:
:undoc-members:
:show-inheritance:
GPy.util.pca module
-------------------
.. automodule:: GPy.util.pca
:members:
:undoc-members:
:show-inheritance:
GPy.util.squashers module
-------------------------
.. automodule:: GPy.util.squashers
:members:
:undoc-members:
:show-inheritance:
GPy.util.subarray_and_sorting module
------------------------------------
.. automodule:: GPy.util.subarray_and_sorting
:members:
:undoc-members:
:show-inheritance:
GPy.util.univariate_Gaussian module
-----------------------------------
.. automodule:: GPy.util.univariate_Gaussian
:members:
:undoc-members:
:show-inheritance:
GPy.util.warping_functions module
---------------------------------
.. automodule:: GPy.util.warping_functions
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.util
:members:
:undoc-members:
:show-inheritance: