diff --git a/doc/source/GPy.core.parameterization.rst b/doc/source/GPy.core.parameterization.rst deleted file mode 100644 index 788e3af8..00000000 --- a/doc/source/GPy.core.parameterization.rst +++ /dev/null @@ -1,118 +0,0 @@ -GPy.core.parameterization package -================================= - -Submodules ----------- - -GPy.core.parameterization.domains module ----------------------------------------- - -.. automodule:: GPy.core.parameterization.domains - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.index_operations module -------------------------------------------------- - -.. automodule:: GPy.core.parameterization.index_operations - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.lists_and_dicts module ------------------------------------------------- - -.. automodule:: GPy.core.parameterization.lists_and_dicts - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.observable module -------------------------------------------- - -.. automodule:: GPy.core.parameterization.observable - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.observable_array module -------------------------------------------------- - -.. automodule:: GPy.core.parameterization.observable_array - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.param module --------------------------------------- - -.. automodule:: GPy.core.parameterization.param - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.parameter_core module ------------------------------------------------ - -.. automodule:: GPy.core.parameterization.parameter_core - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.parameterized module ----------------------------------------------- - -.. automodule:: GPy.core.parameterization.parameterized - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.priors module ---------------------------------------- - -.. automodule:: GPy.core.parameterization.priors - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.ties_and_remappings module ----------------------------------------------------- - -.. automodule:: GPy.core.parameterization.ties_and_remappings - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.transformations module ------------------------------------------------- - -.. automodule:: GPy.core.parameterization.transformations - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.updateable module -------------------------------------------- - -.. automodule:: GPy.core.parameterization.updateable - :members: - :undoc-members: - :show-inheritance: - -GPy.core.parameterization.variational module --------------------------------------------- - -.. automodule:: GPy.core.parameterization.variational - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.core.parameterization - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.core.rst b/doc/source/GPy.core.rst deleted file mode 100644 index 66878101..00000000 --- a/doc/source/GPy.core.rst +++ /dev/null @@ -1,85 +0,0 @@ -GPy.core package -================ - -Subpackages ------------ - -.. toctree:: - - GPy.core.parameterization - -Submodules ----------- - -GPy.core.gp module ------------------- - -.. automodule:: GPy.core.gp - :members: - :undoc-members: - :show-inheritance: - -GPy.core.mapping module ------------------------ - -.. automodule:: GPy.core.mapping - :members: - :undoc-members: - :show-inheritance: - -GPy.core.model module ---------------------- - -.. automodule:: GPy.core.model - :members: - :undoc-members: - :show-inheritance: - -GPy.core.sparse_gp module -------------------------- - -.. automodule:: GPy.core.sparse_gp - :members: - :undoc-members: - :show-inheritance: - -GPy.core.sparse_gp_mpi module ------------------------------ - -.. automodule:: GPy.core.sparse_gp_mpi - :members: - :undoc-members: - :show-inheritance: - -GPy.core.svgp module --------------------- - -.. automodule:: GPy.core.svgp - :members: - :undoc-members: - :show-inheritance: - -GPy.core.symbolic module ------------------------- - -.. automodule:: GPy.core.symbolic - :members: - :undoc-members: - :show-inheritance: - -GPy.core.verbose_optimization module ------------------------------------- - -.. automodule:: GPy.core.verbose_optimization - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.core - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.examples.rst b/doc/source/GPy.examples.rst deleted file mode 100644 index a2919eab..00000000 --- a/doc/source/GPy.examples.rst +++ /dev/null @@ -1,54 +0,0 @@ -GPy.examples package -==================== - -Submodules ----------- - -GPy.examples.classification module ----------------------------------- - -.. automodule:: GPy.examples.classification - :members: - :undoc-members: - :show-inheritance: - -GPy.examples.coreg_example module ---------------------------------- - -.. automodule:: GPy.examples.coreg_example - :members: - :undoc-members: - :show-inheritance: - -GPy.examples.dimensionality_reduction module --------------------------------------------- - -.. automodule:: GPy.examples.dimensionality_reduction - :members: - :undoc-members: - :show-inheritance: - -GPy.examples.non_gaussian module --------------------------------- - -.. automodule:: GPy.examples.non_gaussian - :members: - :undoc-members: - :show-inheritance: - -GPy.examples.regression module ------------------------------- - -.. automodule:: GPy.examples.regression - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.examples - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.inference.latent_function_inference.rst b/doc/source/GPy.inference.latent_function_inference.rst deleted file mode 100644 index c374e73b..00000000 --- a/doc/source/GPy.inference.latent_function_inference.rst +++ /dev/null @@ -1,102 +0,0 @@ -GPy.inference.latent_function_inference package -=============================================== - -Submodules ----------- - -GPy.inference.latent_function_inference.dtc module --------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.dtc - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.exact_gaussian_inference module ------------------------------------------------------------------------ - -.. automodule:: GPy.inference.latent_function_inference.exact_gaussian_inference - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.expectation_propagation module ----------------------------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.expectation_propagation - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.fitc module ---------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.fitc - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.inferenceX module ---------------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.inferenceX - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.laplace module ------------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.laplace - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.posterior module --------------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.posterior - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.svgp module ---------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.svgp - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.var_dtc module ------------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.var_dtc - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.var_dtc_parallel module ---------------------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.var_dtc_parallel - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.latent_function_inference.var_gauss module --------------------------------------------------------- - -.. automodule:: GPy.inference.latent_function_inference.var_gauss - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.inference.latent_function_inference - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.inference.mcmc.rst b/doc/source/GPy.inference.mcmc.rst deleted file mode 100644 index 273658b7..00000000 --- a/doc/source/GPy.inference.mcmc.rst +++ /dev/null @@ -1,30 +0,0 @@ -GPy.inference.mcmc package -========================== - -Submodules ----------- - -GPy.inference.mcmc.hmc module ------------------------------ - -.. automodule:: GPy.inference.mcmc.hmc - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.mcmc.samplers module ----------------------------------- - -.. automodule:: GPy.inference.mcmc.samplers - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.inference.mcmc - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.inference.optimization.rst b/doc/source/GPy.inference.optimization.rst deleted file mode 100644 index f5f2a930..00000000 --- a/doc/source/GPy.inference.optimization.rst +++ /dev/null @@ -1,54 +0,0 @@ -GPy.inference.optimization package -================================== - -Submodules ----------- - -GPy.inference.optimization.conjugate_gradient_descent module ------------------------------------------------------------- - -.. automodule:: GPy.inference.optimization.conjugate_gradient_descent - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.optimization.gradient_descent_update_rules module ---------------------------------------------------------------- - -.. automodule:: GPy.inference.optimization.gradient_descent_update_rules - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.optimization.optimization module ----------------------------------------------- - -.. automodule:: GPy.inference.optimization.optimization - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.optimization.scg module -------------------------------------- - -.. automodule:: GPy.inference.optimization.scg - :members: - :undoc-members: - :show-inheritance: - -GPy.inference.optimization.stochastics module ---------------------------------------------- - -.. automodule:: GPy.inference.optimization.stochastics - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.inference.optimization - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.inference.rst b/doc/source/GPy.inference.rst deleted file mode 100644 index 235f804b..00000000 --- a/doc/source/GPy.inference.rst +++ /dev/null @@ -1,19 +0,0 @@ -GPy.inference package -===================== - -Subpackages ------------ - -.. toctree:: - - GPy.inference.latent_function_inference - GPy.inference.mcmc - GPy.inference.optimization - -Module contents ---------------- - -.. automodule:: GPy.inference - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.kern.rst b/doc/source/GPy.kern.rst deleted file mode 100644 index bb61443b..00000000 --- a/doc/source/GPy.kern.rst +++ /dev/null @@ -1,17 +0,0 @@ -GPy.kern package -================ - -Subpackages ------------ - -.. toctree:: - - GPy.kern.src - -Module contents ---------------- - -.. automodule:: GPy.kern - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.kern.src.psi_comp.rst b/doc/source/GPy.kern.src.psi_comp.rst deleted file mode 100644 index dfa3c270..00000000 --- a/doc/source/GPy.kern.src.psi_comp.rst +++ /dev/null @@ -1,70 +0,0 @@ -GPy.kern.src.psi_comp package -============================= - -Submodules ----------- - -GPy.kern.src.psi_comp.gaussherm module --------------------------------------- - -.. automodule:: GPy.kern.src.psi_comp.gaussherm - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.psi_comp.linear_psi_comp module --------------------------------------------- - -.. automodule:: GPy.kern.src.psi_comp.linear_psi_comp - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.psi_comp.rbf_psi_comp module ------------------------------------------ - -.. automodule:: GPy.kern.src.psi_comp.rbf_psi_comp - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.psi_comp.rbf_psi_gpucomp module --------------------------------------------- - -.. automodule:: GPy.kern.src.psi_comp.rbf_psi_gpucomp - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.psi_comp.sslinear_psi_comp module ----------------------------------------------- - -.. automodule:: GPy.kern.src.psi_comp.sslinear_psi_comp - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.psi_comp.ssrbf_psi_comp module -------------------------------------------- - -.. automodule:: GPy.kern.src.psi_comp.ssrbf_psi_comp - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.psi_comp.ssrbf_psi_gpucomp module ----------------------------------------------- - -.. automodule:: GPy.kern.src.psi_comp.ssrbf_psi_gpucomp - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.kern.src.psi_comp - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.kern.src.rst b/doc/source/GPy.kern.src.rst deleted file mode 100644 index ccbc3f99..00000000 --- a/doc/source/GPy.kern.src.rst +++ /dev/null @@ -1,237 +0,0 @@ -GPy.kern.src package -==================== - -Subpackages ------------ - -.. toctree:: - - GPy.kern.src.psi_comp - -Submodules ----------- - -GPy.kern.src.ODE_UY module --------------------------- - -.. automodule:: GPy.kern.src.ODE_UY - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.ODE_UYC module ---------------------------- - -.. automodule:: GPy.kern.src.ODE_UYC - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.ODE_st module --------------------------- - -.. automodule:: GPy.kern.src.ODE_st - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.ODE_t module -------------------------- - -.. automodule:: GPy.kern.src.ODE_t - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.add module ------------------------ - -.. automodule:: GPy.kern.src.add - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.basis_funcs module -------------------------------- - -.. automodule:: GPy.kern.src.basis_funcs - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.brownian module ----------------------------- - -.. automodule:: GPy.kern.src.brownian - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.coregionalize module ---------------------------------- - -.. automodule:: GPy.kern.src.coregionalize - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.coregionalize_cython module ----------------------------------------- - -.. automodule:: GPy.kern.src.coregionalize_cython - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.eq_ode2 module ---------------------------- - -.. automodule:: GPy.kern.src.eq_ode2 - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.independent_outputs module ---------------------------------------- - -.. automodule:: GPy.kern.src.independent_outputs - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.kern module ------------------------- - -.. automodule:: GPy.kern.src.kern - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.kernel_slice_operations module -------------------------------------------- - -.. automodule:: GPy.kern.src.kernel_slice_operations - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.linear module --------------------------- - -.. automodule:: GPy.kern.src.linear - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.mlp module ------------------------ - -.. automodule:: GPy.kern.src.mlp - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.periodic module ----------------------------- - -.. automodule:: GPy.kern.src.periodic - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.poly module ------------------------- - -.. automodule:: GPy.kern.src.poly - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.prod module ------------------------- - -.. automodule:: GPy.kern.src.prod - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.rbf module ------------------------ - -.. automodule:: GPy.kern.src.rbf - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.spline module --------------------------- - -.. automodule:: GPy.kern.src.spline - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.splitKern module ------------------------------ - -.. automodule:: GPy.kern.src.splitKern - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.standard_periodic module -------------------------------------- - -.. automodule:: GPy.kern.src.standard_periodic - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.static module --------------------------- - -.. automodule:: GPy.kern.src.static - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.stationary module ------------------------------- - -.. automodule:: GPy.kern.src.stationary - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.stationary_cython module -------------------------------------- - -.. automodule:: GPy.kern.src.stationary_cython - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.symbolic module ----------------------------- - -.. automodule:: GPy.kern.src.symbolic - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.src.trunclinear module -------------------------------- - -.. automodule:: GPy.kern.src.trunclinear - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.kern.src - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.likelihoods.rst b/doc/source/GPy.likelihoods.rst deleted file mode 100644 index 15d1952b..00000000 --- a/doc/source/GPy.likelihoods.rst +++ /dev/null @@ -1,94 +0,0 @@ -GPy.likelihoods package -======================= - -Submodules ----------- - -GPy.likelihoods.bernoulli module --------------------------------- - -.. automodule:: GPy.likelihoods.bernoulli - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.binomial module -------------------------------- - -.. automodule:: GPy.likelihoods.binomial - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.exponential module ----------------------------------- - -.. automodule:: GPy.likelihoods.exponential - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.gamma module ----------------------------- - -.. automodule:: GPy.likelihoods.gamma - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.gaussian module -------------------------------- - -.. automodule:: GPy.likelihoods.gaussian - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.likelihood module ---------------------------------- - -.. automodule:: GPy.likelihoods.likelihood - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.link_functions module -------------------------------------- - -.. automodule:: GPy.likelihoods.link_functions - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.mixed_noise module ----------------------------------- - -.. automodule:: GPy.likelihoods.mixed_noise - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.poisson module ------------------------------- - -.. automodule:: GPy.likelihoods.poisson - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.student_t module --------------------------------- - -.. automodule:: GPy.likelihoods.student_t - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.likelihoods - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.mappings.rst b/doc/source/GPy.mappings.rst deleted file mode 100644 index dad16d34..00000000 --- a/doc/source/GPy.mappings.rst +++ /dev/null @@ -1,78 +0,0 @@ -GPy.mappings package -==================== - -Submodules ----------- - -GPy.mappings.additive module ----------------------------- - -.. automodule:: GPy.mappings.additive - :members: - :undoc-members: - :show-inheritance: - -GPy.mappings.compound module ----------------------------- - -.. automodule:: GPy.mappings.compound - :members: - :undoc-members: - :show-inheritance: - -GPy.mappings.constant module ----------------------------- - -.. automodule:: GPy.mappings.constant - :members: - :undoc-members: - :show-inheritance: - -GPy.mappings.identity module ----------------------------- - -.. automodule:: GPy.mappings.identity - :members: - :undoc-members: - :show-inheritance: - -GPy.mappings.kernel module --------------------------- - -.. automodule:: GPy.mappings.kernel - :members: - :undoc-members: - :show-inheritance: - -GPy.mappings.linear module --------------------------- - -.. automodule:: GPy.mappings.linear - :members: - :undoc-members: - :show-inheritance: - -GPy.mappings.mlp module ------------------------ - -.. automodule:: GPy.mappings.mlp - :members: - :undoc-members: - :show-inheritance: - -GPy.mappings.piecewise_linear module ------------------------------------- - -.. automodule:: GPy.mappings.piecewise_linear - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.mappings - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.models.rst b/doc/source/GPy.models.rst deleted file mode 100644 index e65b4fb0..00000000 --- a/doc/source/GPy.models.rst +++ /dev/null @@ -1,198 +0,0 @@ -GPy.models package -================== - -Submodules ----------- - -GPy.models.bayesian_gplvm module --------------------------------- - -.. automodule:: GPy.models.bayesian_gplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.bayesian_gplvm_minibatch module ------------------------------------------- - -.. automodule:: GPy.models.bayesian_gplvm_minibatch - :members: - :undoc-members: - :show-inheritance: - -GPy.models.bcgplvm module -------------------------- - -.. automodule:: GPy.models.bcgplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.dpgplvm module -------------------------- - -.. automodule:: GPy.models.dpgplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_classification module ------------------------------------ - -.. automodule:: GPy.models.gp_classification - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_coregionalized_regression module ----------------------------------------------- - -.. automodule:: GPy.models.gp_coregionalized_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_heteroscedastic_regression module ------------------------------------------------ - -.. automodule:: GPy.models.gp_heteroscedastic_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_kronecker_gaussian_regression module --------------------------------------------------- - -.. automodule:: GPy.models.gp_kronecker_gaussian_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_regression module -------------------------------- - -.. automodule:: GPy.models.gp_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_var_gauss module ------------------------------- - -.. automodule:: GPy.models.gp_var_gauss - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gplvm module ------------------------ - -.. automodule:: GPy.models.gplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gradient_checker module ----------------------------------- - -.. automodule:: GPy.models.gradient_checker - :members: - :undoc-members: - :show-inheritance: - -GPy.models.mrd module ---------------------- - -.. automodule:: GPy.models.mrd - :members: - :undoc-members: - :show-inheritance: - -GPy.models.one_vs_all_classification module -------------------------------------------- - -.. automodule:: GPy.models.one_vs_all_classification - :members: - :undoc-members: - :show-inheritance: - -GPy.models.one_vs_all_sparse_classification module --------------------------------------------------- - -.. automodule:: GPy.models.one_vs_all_sparse_classification - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gp_classification module ------------------------------------------- - -.. automodule:: GPy.models.sparse_gp_classification - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gp_coregionalized_regression module ------------------------------------------------------ - -.. automodule:: GPy.models.sparse_gp_coregionalized_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gp_minibatch module -------------------------------------- - -.. automodule:: GPy.models.sparse_gp_minibatch - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gp_regression module --------------------------------------- - -.. automodule:: GPy.models.sparse_gp_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gplvm module ------------------------------- - -.. automodule:: GPy.models.sparse_gplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.ss_gplvm module --------------------------- - -.. automodule:: GPy.models.ss_gplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.ss_mrd module ------------------------- - -.. automodule:: GPy.models.ss_mrd - :members: - :undoc-members: - :show-inheritance: - -GPy.models.warped_gp module ---------------------------- - -.. automodule:: GPy.models.warped_gp - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.models - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.plotting.gpy_plot.rst b/doc/source/GPy.plotting.gpy_plot.rst deleted file mode 100644 index 8391cd3a..00000000 --- a/doc/source/GPy.plotting.gpy_plot.rst +++ /dev/null @@ -1,62 +0,0 @@ -GPy.plotting.gpy_plot package -============================= - -Submodules ----------- - -GPy.plotting.gpy_plot.data_plots module ---------------------------------------- - -.. automodule:: GPy.plotting.gpy_plot.data_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.gpy_plot.gp_plots module -------------------------------------- - -.. automodule:: GPy.plotting.gpy_plot.gp_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.gpy_plot.inference_plots module --------------------------------------------- - -.. automodule:: GPy.plotting.gpy_plot.inference_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.gpy_plot.kernel_plots module ------------------------------------------ - -.. automodule:: GPy.plotting.gpy_plot.kernel_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.gpy_plot.latent_plots module ------------------------------------------ - -.. automodule:: GPy.plotting.gpy_plot.latent_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.gpy_plot.plot_util module --------------------------------------- - -.. automodule:: GPy.plotting.gpy_plot.plot_util - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.plotting.gpy_plot - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.plotting.matplot_dep.controllers.rst b/doc/source/GPy.plotting.matplot_dep.controllers.rst deleted file mode 100644 index 239f8e79..00000000 --- a/doc/source/GPy.plotting.matplot_dep.controllers.rst +++ /dev/null @@ -1,30 +0,0 @@ -GPy.plotting.matplot_dep.controllers package -============================================ - -Submodules ----------- - -GPy.plotting.matplot_dep.controllers.axis_event_controller module ------------------------------------------------------------------ - -.. automodule:: GPy.plotting.matplot_dep.controllers.axis_event_controller - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.controllers.imshow_controller module -------------------------------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.controllers.imshow_controller - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.plotting.matplot_dep.controllers - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.plotting.matplot_dep.rst b/doc/source/GPy.plotting.matplot_dep.rst deleted file mode 100644 index 9521d9e6..00000000 --- a/doc/source/GPy.plotting.matplot_dep.rst +++ /dev/null @@ -1,117 +0,0 @@ -GPy.plotting.matplot_dep package -================================ - -Subpackages ------------ - -.. toctree:: - - GPy.plotting.matplot_dep.controllers - -Submodules ----------- - -GPy.plotting.matplot_dep.defaults module ----------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.defaults - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.img_plots module ------------------------------------------ - -.. automodule:: GPy.plotting.matplot_dep.img_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.kernel_plots module --------------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.kernel_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.mapping_plots module ---------------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.mapping_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.maps module ------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.maps - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.plot_definitions module ------------------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.plot_definitions - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.priors_plots module --------------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.priors_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.ssgplvm module ---------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.ssgplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.svig_plots module ------------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.svig_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.util module ------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.util - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.variational_plots module -------------------------------------------------- - -.. automodule:: GPy.plotting.matplot_dep.variational_plots - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.matplot_dep.visualize module ------------------------------------------ - -.. automodule:: GPy.plotting.matplot_dep.visualize - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.plotting.matplot_dep - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.plotting.plotly_dep.rst b/doc/source/GPy.plotting.plotly_dep.rst deleted file mode 100644 index 52642e49..00000000 --- a/doc/source/GPy.plotting.plotly_dep.rst +++ /dev/null @@ -1,30 +0,0 @@ -GPy.plotting.plotly_dep package -=============================== - -Submodules ----------- - -GPy.plotting.plotly_dep.defaults module ---------------------------------------- - -.. automodule:: GPy.plotting.plotly_dep.defaults - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.plotly_dep.plot_definitions module ------------------------------------------------ - -.. automodule:: GPy.plotting.plotly_dep.plot_definitions - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.plotting.plotly_dep - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.plotting.rst b/doc/source/GPy.plotting.rst deleted file mode 100644 index 33c39c93..00000000 --- a/doc/source/GPy.plotting.rst +++ /dev/null @@ -1,39 +0,0 @@ -GPy.plotting package -==================== - -Subpackages ------------ - -.. toctree:: - - GPy.plotting.gpy_plot - GPy.plotting.matplot_dep - GPy.plotting.plotly_dep - -Submodules ----------- - -GPy.plotting.Tango module -------------------------- - -.. automodule:: GPy.plotting.Tango - :members: - :undoc-members: - :show-inheritance: - -GPy.plotting.abstract_plotting_library module ---------------------------------------------- - -.. automodule:: GPy.plotting.abstract_plotting_library - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.plotting - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.rst b/doc/source/GPy.rst deleted file mode 100644 index 9be6dbec..00000000 --- a/doc/source/GPy.rst +++ /dev/null @@ -1,26 +0,0 @@ -GPy package -=========== - -Subpackages ------------ - -.. toctree:: - - GPy.core - GPy.examples - GPy.inference - GPy.kern - GPy.likelihoods - GPy.mappings - GPy.models - GPy.plotting - GPy.testing - GPy.util - -Module contents ---------------- - -.. automodule:: GPy - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.testing.rst b/doc/source/GPy.testing.rst deleted file mode 100644 index a10c3d18..00000000 --- a/doc/source/GPy.testing.rst +++ /dev/null @@ -1,206 +0,0 @@ -GPy.testing package -=================== - -Submodules ----------- - -GPy.testing.bgplvm_minibatch_tests module ------------------------------------------ - -.. automodule:: GPy.testing.bgplvm_minibatch_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.cacher_tests module -------------------------------- - -.. automodule:: GPy.testing.cacher_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.cython_tests module -------------------------------- - -.. automodule:: GPy.testing.cython_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.examples_tests module ---------------------------------- - -.. automodule:: GPy.testing.examples_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.fitc module ------------------------ - -.. automodule:: GPy.testing.fitc - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.gp_tests module ---------------------------- - -.. automodule:: GPy.testing.gp_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.index_operations_tests module ------------------------------------------ - -.. automodule:: GPy.testing.index_operations_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.inference_tests module ----------------------------------- - -.. automodule:: GPy.testing.inference_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.kernel_tests module -------------------------------- - -.. automodule:: GPy.testing.kernel_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.likelihood_tests module ------------------------------------ - -.. automodule:: GPy.testing.likelihood_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.linalg_test module ------------------------------- - -.. automodule:: GPy.testing.linalg_test - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.link_function_tests module --------------------------------------- - -.. automodule:: GPy.testing.link_function_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.mapping_tests module --------------------------------- - -.. automodule:: GPy.testing.mapping_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.meanfunc_tests module ---------------------------------- - -.. automodule:: GPy.testing.meanfunc_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.misc_tests module ------------------------------ - -.. automodule:: GPy.testing.misc_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.model_tests module ------------------------------- - -.. automodule:: GPy.testing.model_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.mpi_tests module ----------------------------- - -.. automodule:: GPy.testing.mpi_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.observable_tests module ------------------------------------ - -.. automodule:: GPy.testing.observable_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.parameterized_tests module --------------------------------------- - -.. automodule:: GPy.testing.parameterized_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.pickle_tests module -------------------------------- - -.. automodule:: GPy.testing.pickle_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.plotting_tests module ---------------------------------- - -.. automodule:: GPy.testing.plotting_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.prior_tests module ------------------------------- - -.. automodule:: GPy.testing.prior_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.rv_transformation_tests module ------------------------------------------- - -.. automodule:: GPy.testing.rv_transformation_tests - :members: - :undoc-members: - :show-inheritance: - -GPy.testing.svgp_tests module ------------------------------ - -.. automodule:: GPy.testing.svgp_tests - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.testing - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/source/GPy.util.rst b/doc/source/GPy.util.rst deleted file mode 100644 index 354a3cce..00000000 --- a/doc/source/GPy.util.rst +++ /dev/null @@ -1,238 +0,0 @@ -GPy.util package -================ - -Submodules ----------- - -GPy.util.block_matrices module ------------------------------- - -.. automodule:: GPy.util.block_matrices - :members: - :undoc-members: - :show-inheritance: - -GPy.util.caching module ------------------------ - -.. automodule:: GPy.util.caching - :members: - :undoc-members: - :show-inheritance: - -GPy.util.choleskies module --------------------------- - -.. automodule:: GPy.util.choleskies - :members: - :undoc-members: - :show-inheritance: - -GPy.util.choleskies_cython module ---------------------------------- - -.. automodule:: GPy.util.choleskies_cython - :members: - :undoc-members: - :show-inheritance: - -GPy.util.classification module ------------------------------- - -.. automodule:: GPy.util.classification - :members: - :undoc-members: - :show-inheritance: - -GPy.util.config module ----------------------- - -.. automodule:: GPy.util.config - :members: - :undoc-members: - :show-inheritance: - -GPy.util.datasets module ------------------------- - -.. automodule:: GPy.util.datasets - :members: - :undoc-members: - :show-inheritance: - -GPy.util.debug module ---------------------- - -.. automodule:: GPy.util.debug - :members: - :undoc-members: - :show-inheritance: - -GPy.util.decorators module --------------------------- - -.. automodule:: GPy.util.decorators - :members: - :undoc-members: - :show-inheritance: - -GPy.util.diag module --------------------- - -.. automodule:: GPy.util.diag - :members: - :undoc-members: - :show-inheritance: - -GPy.util.functions module -------------------------- - -.. automodule:: GPy.util.functions - :members: - :undoc-members: - :show-inheritance: - -GPy.util.gpu_init module ------------------------- - -.. automodule:: GPy.util.gpu_init - :members: - :undoc-members: - :show-inheritance: - -GPy.util.initialization module ------------------------------- - -.. automodule:: GPy.util.initialization - :members: - :undoc-members: - :show-inheritance: - -GPy.util.linalg module ----------------------- - -.. automodule:: GPy.util.linalg - :members: - :undoc-members: - :show-inheritance: - -GPy.util.linalg_cython module ------------------------------ - -.. automodule:: GPy.util.linalg_cython - :members: - :undoc-members: - :show-inheritance: - -GPy.util.linalg_gpu module --------------------------- - -.. automodule:: GPy.util.linalg_gpu - :members: - :undoc-members: - :show-inheritance: - -GPy.util.ln_diff_erfs module ----------------------------- - -.. automodule:: GPy.util.ln_diff_erfs - :members: - :undoc-members: - :show-inheritance: - -GPy.util.misc module --------------------- - -.. automodule:: GPy.util.misc - :members: - :undoc-members: - :show-inheritance: - -GPy.util.mocap module ---------------------- - -.. automodule:: GPy.util.mocap - :members: - :undoc-members: - :show-inheritance: - -GPy.util.multioutput module ---------------------------- - -.. automodule:: GPy.util.multioutput - :members: - :undoc-members: - :show-inheritance: - -GPy.util.netpbmfile module --------------------------- - -.. automodule:: GPy.util.netpbmfile - :members: - :undoc-members: - :show-inheritance: - -GPy.util.normalizer module --------------------------- - -.. automodule:: GPy.util.normalizer - :members: - :undoc-members: - :show-inheritance: - -GPy.util.parallel module ------------------------- - -.. automodule:: GPy.util.parallel - :members: - :undoc-members: - :show-inheritance: - -GPy.util.pca module -------------------- - -.. automodule:: GPy.util.pca - :members: - :undoc-members: - :show-inheritance: - -GPy.util.squashers module -------------------------- - -.. automodule:: GPy.util.squashers - :members: - :undoc-members: - :show-inheritance: - -GPy.util.subarray_and_sorting module ------------------------------------- - -.. automodule:: GPy.util.subarray_and_sorting - :members: - :undoc-members: - :show-inheritance: - -GPy.util.univariate_Gaussian module ------------------------------------ - -.. automodule:: GPy.util.univariate_Gaussian - :members: - :undoc-members: - :show-inheritance: - -GPy.util.warping_functions module ---------------------------------- - -.. automodule:: GPy.util.warping_functions - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.util - :members: - :undoc-members: - :show-inheritance: