diff --git a/GPy/inference/latent_function_inference/var_dtc.py b/GPy/inference/latent_function_inference/var_dtc.py index 1cabecc3..0459132a 100644 --- a/GPy/inference/latent_function_inference/var_dtc.py +++ b/GPy/inference/latent_function_inference/var_dtc.py @@ -167,6 +167,7 @@ class VarDTC(LatentFunctionInference): woodbury_vector = Cpsi1Vf # == Cpsi1V else: print 'foobar' + stop psi1V = np.dot(Y.T*beta, psi1).T tmp, _ = dtrtrs(Lm, psi1V, lower=1, trans=0) tmp, _ = dpotrs(LB, tmp, lower=1) diff --git a/GPy/inference/optimization/hmc.py b/GPy/inference/mcmc/hmc.py similarity index 100% rename from GPy/inference/optimization/hmc.py rename to GPy/inference/mcmc/hmc.py diff --git a/GPy/inference/optimization/samplers.py b/GPy/inference/mcmc/samplers.py similarity index 100% rename from GPy/inference/optimization/samplers.py rename to GPy/inference/mcmc/samplers.py diff --git a/doc/GPy.inference.optimization.rst b/doc/GPy.inference.optimization.rst index 83339202..81fa877a 100644 --- a/doc/GPy.inference.optimization.rst +++ b/doc/GPy.inference.optimization.rst @@ -68,6 +68,14 @@ GPy.inference.optimization.sgd module :undoc-members: :show-inheritance: +GPy.inference.optimization.stochastics module +--------------------------------------------- + +.. automodule:: GPy.inference.optimization.stochastics + :members: + :undoc-members: + :show-inheritance: + Module contents --------------- diff --git a/doc/GPy.likelihoods.rst b/doc/GPy.likelihoods.rst index 70679454..9d74fead 100644 --- a/doc/GPy.likelihoods.rst +++ b/doc/GPy.likelihoods.rst @@ -60,14 +60,6 @@ GPy.likelihoods.mixed_noise module :undoc-members: :show-inheritance: -GPy.likelihoods.negative_binomial module ----------------------------------------- - -.. automodule:: GPy.likelihoods.negative_binomial - :members: - :undoc-members: - :show-inheritance: - GPy.likelihoods.ordinal module ------------------------------ @@ -84,30 +76,6 @@ GPy.likelihoods.poisson module :undoc-members: :show-inheritance: -GPy.likelihoods.skew_exponential module ---------------------------------------- - -.. automodule:: GPy.likelihoods.skew_exponential - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.skew_normal module ----------------------------------- - -.. automodule:: GPy.likelihoods.skew_normal - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.sstudent_t module ---------------------------------- - -.. automodule:: GPy.likelihoods.sstudent_t - :members: - :undoc-members: - :show-inheritance: - GPy.likelihoods.student_t module -------------------------------- @@ -116,14 +84,6 @@ GPy.likelihoods.student_t module :undoc-members: :show-inheritance: -GPy.likelihoods.symbolic module -------------------------------- - -.. automodule:: GPy.likelihoods.symbolic - :members: - :undoc-members: - :show-inheritance: - Module contents --------------- diff --git a/doc/GPy.mappings.rst b/doc/GPy.mappings.rst index e5d89872..c13642cc 100644 --- a/doc/GPy.mappings.rst +++ b/doc/GPy.mappings.rst @@ -36,14 +36,6 @@ GPy.mappings.mlp module :undoc-members: :show-inheritance: -GPy.mappings.symbolic module ----------------------------- - -.. automodule:: GPy.mappings.symbolic - :members: - :undoc-members: - :show-inheritance: - Module contents --------------- diff --git a/doc/GPy.testing.rst b/doc/GPy.testing.rst index 657d0638..bef24a30 100644 --- a/doc/GPy.testing.rst +++ b/doc/GPy.testing.rst @@ -84,10 +84,10 @@ GPy.testing.prior_tests module :undoc-members: :show-inheritance: -GPy.testing.tie_tests module ----------------------------- +GPy.testing.sparse_tests module +------------------------------- -.. automodule:: GPy.testing.tie_tests +.. automodule:: GPy.testing.sparse_tests :members: :undoc-members: :show-inheritance: diff --git a/doc/GPy.util.rst b/doc/GPy.util.rst index 14c7643b..e50efdfb 100644 --- a/doc/GPy.util.rst +++ b/doc/GPy.util.rst @@ -204,14 +204,6 @@ GPy.util.subarray_and_sorting module :undoc-members: :show-inheritance: -GPy.util.symbolic module ------------------------- - -.. automodule:: GPy.util.symbolic - :members: - :undoc-members: - :show-inheritance: - GPy.util.univariate_Gaussian module -----------------------------------