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Bump the version: 1.9.5 -> 1.9.6

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Zhenwen Dai 2018-10-30 10:05:56 +00:00
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CHANGELOG.md
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# Changelog # Changelog
## v1.9.6 (2018-10-30)
## New
* Added a new class that enables using multiple likelihoods [@esiivola]
* Alex grig kalman new [@AlexGrig, @mzwiessele]
## Fix
* fix typo in docstring for GP.opimize() [@RobRomijnders]
* Updates to posterior sampling [@lawrennd]
* Jayanthkoushik cython fix [@jayanthkoushik, @mzwiessele]
* Added missing columns (:), fixed indentation [@vlavorini]
* Fix the bug in the prediction of full covariance matrix [@zhenwendai]
## v1.9.5 (2018-09-02) ## v1.9.5 (2018-09-02)
@ -2484,8 +2503,8 @@
* Merge branch 'devel' into paramz. [mzwiessele] * Merge branch 'devel' into paramz. [mzwiessele]
Conflicts: Conflicts:
GPy/core/parameterization/parameter_core.py GPy/core/parameterization/parameter_core.py
GPy/testing/pickle_tests.py GPy/testing/pickle_tests.py
* [paramz] wrapping - todo: deprecation warnings. [mzwiessele] * [paramz] wrapping - todo: deprecation warnings. [mzwiessele]
@ -3998,7 +4017,7 @@
* Merge remote-tracking branch 'upstream/devel' into devel. [tjhgit] * Merge remote-tracking branch 'upstream/devel' into devel. [tjhgit]
Conflicts: Conflicts:
GPy/kern/__init__.py GPy/kern/__init__.py
* Added spline kernel (from P. Hennig) to GPy. [tjhgit] * Added spline kernel (from P. Hennig) to GPy. [tjhgit]
@ -5533,10 +5552,10 @@
* Integrated Laplace and merged Merge remote-tracking branch 'gpy_real/devel' into merge_branch. [Alan Saul] * Integrated Laplace and merged Merge remote-tracking branch 'gpy_real/devel' into merge_branch. [Alan Saul]
Conflicts: Conflicts:
GPy/core/gp.py GPy/core/gp.py
GPy/likelihoods/__init__.py GPy/likelihoods/__init__.py
GPy/likelihoods/likelihood_functions.py GPy/likelihoods/likelihood_functions.py
GPy/likelihoods/link_functions.py GPy/likelihoods/link_functions.py
* Fixed white variance. [Alan Saul] * Fixed white variance. [Alan Saul]
@ -5675,7 +5694,7 @@
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele] * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele]
Conflicts: Conflicts:
GPy/inference/latent_function_inference/inferenceX.py GPy/inference/latent_function_inference/inferenceX.py
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Zhenwen Dai] * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Zhenwen Dai]
@ -6190,7 +6209,7 @@
* [dim red plots] plotting big models. [mzwiessele] * [dim red plots] plotting big models. [mzwiessele]
Conflicts: Conflicts:
GPy/plotting/matplot_dep/dim_reduction_plots.py GPy/plotting/matplot_dep/dim_reduction_plots.py
* Add debug util module and try to debug sparsegp_mpi. [Zhenwen Dai] * Add debug util module and try to debug sparsegp_mpi. [Zhenwen Dai]
@ -6207,8 +6226,8 @@
* [normalizer] first commit for normalizer in GPy. [mzwiessele] * [normalizer] first commit for normalizer in GPy. [mzwiessele]
Conflicts: Conflicts:
GPy/core/sparse_gp.py GPy/core/sparse_gp.py
GPy/models/bayesian_gplvm.py GPy/models/bayesian_gplvm.py
* Further bug fix for sparsegp_mpi. [Zhenwen Dai] * Further bug fix for sparsegp_mpi. [Zhenwen Dai]
@ -6227,8 +6246,8 @@
* [ard] enhanced ard handling and plotting. [mzwiessele] * [ard] enhanced ard handling and plotting. [mzwiessele]
Conflicts: Conflicts:
GPy/kern/_src/linear.py GPy/kern/_src/linear.py
GPy/models/ss_gplvm.py GPy/models/ss_gplvm.py
* [linear] einsums. [mzwiessele] * [linear] einsums. [mzwiessele]
@ -6331,14 +6350,14 @@
* [inference] less constant jitter, and jitter adjustements. [mzwiessele] * [inference] less constant jitter, and jitter adjustements. [mzwiessele]
Conflicts: Conflicts:
GPy/util/linalg.py GPy/util/linalg.py
* Fixed a bug in optimize restarts: it now used optimizer_array. [James Hensman] * Fixed a bug in optimize restarts: it now used optimizer_array. [James Hensman]
* [vardtc missing] logging. [maxz] * [vardtc missing] logging. [maxz]
Conflicts: Conflicts:
GPy/inference/latent_function_inference/var_dtc.py GPy/inference/latent_function_inference/var_dtc.py
* [init] normalization bugfix. [mzwiessele] * [init] normalization bugfix. [mzwiessele]
@ -6839,7 +6858,7 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/kern/_src/kern.py GPy/kern/_src/kern.py
* Missing file, import line commented. [Ricardo] * Missing file, import line commented. [Ricardo]
@ -6888,8 +6907,8 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/models/gp_classification.py GPy/models/gp_classification.py
GPy/models/sparse_gp_classification.py GPy/models/sparse_gp_classification.py
* New file. [Ricardo] * New file. [Ricardo]
@ -7170,7 +7189,7 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/likelihoods/mixed_noise.py GPy/likelihoods/mixed_noise.py
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
@ -7255,14 +7274,14 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele]
Conflicts: Conflicts:
GPy/likelihoods/gaussian.py GPy/likelihoods/gaussian.py
* Bug fix w.r.t. var_dtc.py. [Zhenwen Dai] * Bug fix w.r.t. var_dtc.py. [Zhenwen Dai]
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/inference/latent_function_inference/var_dtc.py GPy/inference/latent_function_inference/var_dtc.py
* New model SparseGPCoregionalizedRegression. [Ricardo] * New model SparseGPCoregionalizedRegression. [Ricardo]
@ -7462,8 +7481,8 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/core/gp.py GPy/core/gp.py
GPy/plotting/matplot_dep/models_plots.py GPy/plotting/matplot_dep/models_plots.py
* GPCoregionalizedRegresssion added. [Ricardo] * GPCoregionalizedRegresssion added. [Ricardo]
@ -7724,7 +7743,7 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/kern/_src/constructors.py GPy/kern/_src/constructors.py
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
@ -7733,8 +7752,8 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/kern/kern.py GPy/kern/kern.py
GPy/kern/parts/prod.py GPy/kern/parts/prod.py
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
@ -7743,7 +7762,7 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/kern/parts/prod.py GPy/kern/parts/prod.py
* Minor changes. [Ricardo] * Minor changes. [Ricardo]
@ -8106,7 +8125,7 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele]
Conflicts: Conflicts:
GPy/core/parameterization/param.py GPy/core/parameterization/param.py
* Fixed a couple of small params bugs. [Alan Saul] * Fixed a couple of small params bugs. [Alan Saul]
@ -8121,9 +8140,9 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele]
Conflicts: Conflicts:
GPy/core/parameterization/param.py GPy/core/parameterization/param.py
GPy/core/parameterization/parameter_core.py GPy/core/parameterization/parameter_core.py
GPy/core/parameterization/parameterized.py GPy/core/parameterization/parameterized.py
* Stupid error, needed to actually USE the gradients in student t... Looks like s2 of rasm's may have an extra -? dW_df == -d2logpdf_df not just d2logpdf_df? [Alan Saul] * Stupid error, needed to actually USE the gradients in student t... Looks like s2 of rasm's may have an extra -? dW_df == -d2logpdf_df not just d2logpdf_df? [Alan Saul]
@ -8208,7 +8227,7 @@
* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]
Conflicts: Conflicts:
GPy/core/sparse_gp.py GPy/core/sparse_gp.py
* Typo corrected. [Ricardo] * Typo corrected. [Ricardo]
@ -8622,7 +8641,7 @@
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo]
Conflicts: Conflicts:
GPy/examples/classification.py GPy/examples/classification.py
* Fixed a bug in Neil's otherwise tidy hetero kernel. [James Hensman] * Fixed a bug in Neil's otherwise tidy hetero kernel. [James Hensman]
@ -8691,8 +8710,8 @@
* Merge branch 'devel' into params. [Max Zwiessele] * Merge branch 'devel' into params. [Max Zwiessele]
Conflicts: Conflicts:
GPy/core/transformations.py GPy/core/transformations.py
GPy/kern/parts/kernpart.py GPy/kern/parts/kernpart.py
* Merge pull request #77 from jamesmcm/devel. [James McMurray] * Merge pull request #77 from jamesmcm/devel. [James McMurray]
@ -8751,10 +8770,10 @@
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo]
Conflicts: Conflicts:
GPy/examples/regression.py GPy/examples/regression.py
GPy/kern/constructors.py GPy/kern/constructors.py
GPy/testing/kernel_tests.py GPy/testing/kernel_tests.py
GPy/util/multioutput.py GPy/util/multioutput.py
* Other local changes. [Neil Lawrence] * Other local changes. [Neil Lawrence]
@ -8779,15 +8798,15 @@
* Merge branch 'linK_functions2' into devel. [Ricardo] * Merge branch 'linK_functions2' into devel. [Ricardo]
Conflicts: Conflicts:
GPy/core/gp.py GPy/core/gp.py
GPy/core/gp_base.py GPy/core/gp_base.py
GPy/core/sparse_gp.py GPy/core/sparse_gp.py
GPy/examples/regression.py GPy/examples/regression.py
GPy/kern/constructors.py GPy/kern/constructors.py
GPy/kern/parts/coregionalise.py GPy/kern/parts/coregionalise.py
GPy/models/__init__.py GPy/models/__init__.py
GPy/models/sparse_gp_classification.py GPy/models/sparse_gp_classification.py
GPy/util/__init__.py GPy/util/__init__.py
* Useless files deleted. [Ricardo] * Useless files deleted. [Ricardo]
@ -9460,7 +9479,7 @@
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo]
Conflicts: Conflicts:
GPy/core/fitc.py GPy/core/fitc.py
* FITC example added. [Ricardo] * FITC example added. [Ricardo]
@ -9628,7 +9647,7 @@
* Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence] * Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence]
Conflicts: Conflicts:
GPy/models/GPLVM.py GPy/models/GPLVM.py
* Remove copies (they are now in visualize code ...). [Neil Lawrence] * Remove copies (they are now in visualize code ...). [Neil Lawrence]
@ -9776,7 +9795,7 @@
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo]
Conflicts: Conflicts:
GPy/models/GP.py GPy/models/GP.py
* Plot function got broken with last commit, this fixes it. [Ricardo] * Plot function got broken with last commit, this fixes it. [Ricardo]
@ -10118,7 +10137,7 @@
* Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence] * Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence]
Conflicts: Conflicts:
GPy/examples/dimensionality_reduction.py GPy/examples/dimensionality_reduction.py
* Minor changes. [Neil Lawrence] * Minor changes. [Neil Lawrence]
@ -10189,8 +10208,8 @@
* Merge branch 'devel' into new_constraints. [James Hensman] * Merge branch 'devel' into new_constraints. [James Hensman]
Conflicts: Conflicts:
GPy/core/model.py GPy/core/model.py
GPy/core/parameterised.py GPy/core/parameterised.py
* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele] * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele]
@ -10752,7 +10771,7 @@
* Merge branch 'master' of github.com:SheffieldML/GPy. [Ricardo Andrade] * Merge branch 'master' of github.com:SheffieldML/GPy. [Ricardo Andrade]
Conflicts: Conflicts:
GPy/examples/__init__.py GPy/examples/__init__.py
* Working on psi cross terms. [Nicolo Fusi] * Working on psi cross terms. [Nicolo Fusi]
@ -11192,7 +11211,7 @@
* Merge branch 'newGP' [James Hensman] * Merge branch 'newGP' [James Hensman]
Conflicts: Conflicts:
GPy/models/GP_regression.py GPy/models/GP_regression.py
* Simplified the checkgrad logic somewhat. [James Hensman] * Simplified the checkgrad logic somewhat. [James Hensman]
@ -11223,7 +11242,7 @@
* Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [James Hensman] * Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [James Hensman]
Conflicts: Conflicts:
GPy/likelihoods/EP.py GPy/likelihoods/EP.py
* James' debugging of the EP/GP interface. [Ricardo Andrade] * James' debugging of the EP/GP interface. [Ricardo Andrade]
@ -11234,8 +11253,8 @@
* Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [Ricardo Andrade] * Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [Ricardo Andrade]
Conflicts: Conflicts:
GPy/likelihoods/EP.py GPy/likelihoods/EP.py
GPy/likelihoods/likelihood_functions.py GPy/likelihoods/likelihood_functions.py
* So many changes. [Ricardo Andrade] * So many changes. [Ricardo Andrade]
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* Core file. [Nicolo Fusi] * Core file. [Nicolo Fusi]
* Initial commit. [Nicolò Fusi] * Initial commit. [Nicolò Fusi]

2
GPy/__version__.py
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__version__ = "1.9.5" __version__ = "1.9.6"