From ad3e90968c26466eb86eabb32a4bd75fe7b1cf81 Mon Sep 17 00:00:00 2001 From: Zhenwen Dai Date: Tue, 30 Oct 2018 10:05:56 +0000 Subject: [PATCH] Bump the version: 1.9.5 -> 1.9.6 --- CHANGELOG.md | 139 +++++++++++++++++++++++++-------------------- GPy/__version__.py | 2 +- 2 files changed, 79 insertions(+), 62 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c18a81d7..7990ead2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,24 @@ # Changelog +## v1.9.6 (2018-10-30) + +## New + +* Added a new class that enables using multiple likelihoods [@esiivola] + +* Alex grig kalman new [@AlexGrig, @mzwiessele] + +## Fix + +* fix typo in docstring for GP.opimize() [@RobRomijnders] + +* Updates to posterior sampling [@lawrennd] + +* Jayanthkoushik cython fix [@jayanthkoushik, @mzwiessele] + +* Added missing columns (:), fixed indentation [@vlavorini] + +* Fix the bug in the prediction of full covariance matrix [@zhenwendai] ## v1.9.5 (2018-09-02) @@ -2484,8 +2503,8 @@ * Merge branch 'devel' into paramz. [mzwiessele] Conflicts: - GPy/core/parameterization/parameter_core.py - GPy/testing/pickle_tests.py + GPy/core/parameterization/parameter_core.py + GPy/testing/pickle_tests.py * [paramz] wrapping - todo: deprecation warnings. [mzwiessele] @@ -3998,7 +4017,7 @@ * Merge remote-tracking branch 'upstream/devel' into devel. [tjhgit] Conflicts: - GPy/kern/__init__.py + GPy/kern/__init__.py * Added spline kernel (from P. Hennig) to GPy. [tjhgit] @@ -5533,10 +5552,10 @@ * Integrated Laplace and merged Merge remote-tracking branch 'gpy_real/devel' into merge_branch. [Alan Saul] Conflicts: - GPy/core/gp.py - GPy/likelihoods/__init__.py - GPy/likelihoods/likelihood_functions.py - GPy/likelihoods/link_functions.py + GPy/core/gp.py + GPy/likelihoods/__init__.py + GPy/likelihoods/likelihood_functions.py + GPy/likelihoods/link_functions.py * Fixed white variance. [Alan Saul] @@ -5675,7 +5694,7 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele] Conflicts: - GPy/inference/latent_function_inference/inferenceX.py + GPy/inference/latent_function_inference/inferenceX.py * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Zhenwen Dai] @@ -6190,7 +6209,7 @@ * [dim red plots] plotting big models. [mzwiessele] Conflicts: - GPy/plotting/matplot_dep/dim_reduction_plots.py + GPy/plotting/matplot_dep/dim_reduction_plots.py * Add debug util module and try to debug sparsegp_mpi. [Zhenwen Dai] @@ -6207,8 +6226,8 @@ * [normalizer] first commit for normalizer in GPy. [mzwiessele] Conflicts: - GPy/core/sparse_gp.py - GPy/models/bayesian_gplvm.py + GPy/core/sparse_gp.py + GPy/models/bayesian_gplvm.py * Further bug fix for sparsegp_mpi. [Zhenwen Dai] @@ -6227,8 +6246,8 @@ * [ard] enhanced ard handling and plotting. [mzwiessele] Conflicts: - GPy/kern/_src/linear.py - GPy/models/ss_gplvm.py + GPy/kern/_src/linear.py + GPy/models/ss_gplvm.py * [linear] einsums. [mzwiessele] @@ -6331,14 +6350,14 @@ * [inference] less constant jitter, and jitter adjustements. [mzwiessele] Conflicts: - GPy/util/linalg.py + GPy/util/linalg.py * Fixed a bug in optimize restarts: it now used optimizer_array. [James Hensman] * [vardtc missing] logging. [maxz] Conflicts: - GPy/inference/latent_function_inference/var_dtc.py + GPy/inference/latent_function_inference/var_dtc.py * [init] normalization bugfix. [mzwiessele] @@ -6839,7 +6858,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/kern/_src/kern.py + GPy/kern/_src/kern.py * Missing file, import line commented. [Ricardo] @@ -6888,8 +6907,8 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/models/gp_classification.py - GPy/models/sparse_gp_classification.py + GPy/models/gp_classification.py + GPy/models/sparse_gp_classification.py * New file. [Ricardo] @@ -7170,7 +7189,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/likelihoods/mixed_noise.py + GPy/likelihoods/mixed_noise.py * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] @@ -7255,14 +7274,14 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] Conflicts: - GPy/likelihoods/gaussian.py + GPy/likelihoods/gaussian.py * Bug fix w.r.t. var_dtc.py. [Zhenwen Dai] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/inference/latent_function_inference/var_dtc.py + GPy/inference/latent_function_inference/var_dtc.py * New model SparseGPCoregionalizedRegression. [Ricardo] @@ -7462,8 +7481,8 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/core/gp.py - GPy/plotting/matplot_dep/models_plots.py + GPy/core/gp.py + GPy/plotting/matplot_dep/models_plots.py * GPCoregionalizedRegresssion added. [Ricardo] @@ -7724,7 +7743,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/kern/_src/constructors.py + GPy/kern/_src/constructors.py * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] @@ -7733,8 +7752,8 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/kern/kern.py - GPy/kern/parts/prod.py + GPy/kern/kern.py + GPy/kern/parts/prod.py * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] @@ -7743,7 +7762,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/kern/parts/prod.py + GPy/kern/parts/prod.py * Minor changes. [Ricardo] @@ -8106,7 +8125,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] Conflicts: - GPy/core/parameterization/param.py + GPy/core/parameterization/param.py * Fixed a couple of small params bugs. [Alan Saul] @@ -8121,9 +8140,9 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] Conflicts: - GPy/core/parameterization/param.py - GPy/core/parameterization/parameter_core.py - GPy/core/parameterization/parameterized.py + GPy/core/parameterization/param.py + GPy/core/parameterization/parameter_core.py + GPy/core/parameterization/parameterized.py * Stupid error, needed to actually USE the gradients in student t... Looks like s2 of rasm's may have an extra -? dW_df == -d2logpdf_df not just d2logpdf_df? [Alan Saul] @@ -8208,7 +8227,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/core/sparse_gp.py + GPy/core/sparse_gp.py * Typo corrected. [Ricardo] @@ -8622,7 +8641,7 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] Conflicts: - GPy/examples/classification.py + GPy/examples/classification.py * Fixed a bug in Neil's otherwise tidy hetero kernel. [James Hensman] @@ -8691,8 +8710,8 @@ * Merge branch 'devel' into params. [Max Zwiessele] Conflicts: - GPy/core/transformations.py - GPy/kern/parts/kernpart.py + GPy/core/transformations.py + GPy/kern/parts/kernpart.py * Merge pull request #77 from jamesmcm/devel. [James McMurray] @@ -8751,10 +8770,10 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] Conflicts: - GPy/examples/regression.py - GPy/kern/constructors.py - GPy/testing/kernel_tests.py - GPy/util/multioutput.py + GPy/examples/regression.py + GPy/kern/constructors.py + GPy/testing/kernel_tests.py + GPy/util/multioutput.py * Other local changes. [Neil Lawrence] @@ -8779,15 +8798,15 @@ * Merge branch 'linK_functions2' into devel. [Ricardo] Conflicts: - GPy/core/gp.py - GPy/core/gp_base.py - GPy/core/sparse_gp.py - GPy/examples/regression.py - GPy/kern/constructors.py - GPy/kern/parts/coregionalise.py - GPy/models/__init__.py - GPy/models/sparse_gp_classification.py - GPy/util/__init__.py + GPy/core/gp.py + GPy/core/gp_base.py + GPy/core/sparse_gp.py + GPy/examples/regression.py + GPy/kern/constructors.py + GPy/kern/parts/coregionalise.py + GPy/models/__init__.py + GPy/models/sparse_gp_classification.py + GPy/util/__init__.py * Useless files deleted. [Ricardo] @@ -9460,7 +9479,7 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] Conflicts: - GPy/core/fitc.py + GPy/core/fitc.py * FITC example added. [Ricardo] @@ -9628,7 +9647,7 @@ * Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence] Conflicts: - GPy/models/GPLVM.py + GPy/models/GPLVM.py * Remove copies (they are now in visualize code ...). [Neil Lawrence] @@ -9776,7 +9795,7 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] Conflicts: - GPy/models/GP.py + GPy/models/GP.py * Plot function got broken with last commit, this fixes it. [Ricardo] @@ -10118,7 +10137,7 @@ * Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence] Conflicts: - GPy/examples/dimensionality_reduction.py + GPy/examples/dimensionality_reduction.py * Minor changes. [Neil Lawrence] @@ -10189,8 +10208,8 @@ * Merge branch 'devel' into new_constraints. [James Hensman] Conflicts: - GPy/core/model.py - GPy/core/parameterised.py + GPy/core/model.py + GPy/core/parameterised.py * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele] @@ -10752,7 +10771,7 @@ * Merge branch 'master' of github.com:SheffieldML/GPy. [Ricardo Andrade] Conflicts: - GPy/examples/__init__.py + GPy/examples/__init__.py * Working on psi cross terms. [Nicolo Fusi] @@ -11192,7 +11211,7 @@ * Merge branch 'newGP' [James Hensman] Conflicts: - GPy/models/GP_regression.py + GPy/models/GP_regression.py * Simplified the checkgrad logic somewhat. [James Hensman] @@ -11223,7 +11242,7 @@ * Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [James Hensman] Conflicts: - GPy/likelihoods/EP.py + GPy/likelihoods/EP.py * James' debugging of the EP/GP interface. [Ricardo Andrade] @@ -11234,8 +11253,8 @@ * Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [Ricardo Andrade] Conflicts: - GPy/likelihoods/EP.py - GPy/likelihoods/likelihood_functions.py + GPy/likelihoods/EP.py + GPy/likelihoods/likelihood_functions.py * So many changes. [Ricardo Andrade] @@ -11999,5 +12018,3 @@ * Core file. [Nicolo Fusi] * Initial commit. [Nicolò Fusi] - - diff --git a/GPy/__version__.py b/GPy/__version__.py index 96974ae1..58bdec10 100644 --- a/GPy/__version__.py +++ b/GPy/__version__.py @@ -1 +1 @@ -__version__ = "1.9.5" +__version__ = "1.9.6"