explore_connections (chain, associations, bridges) returned empty results because
it read from CognitiveEngine in-memory data structures that were never populated.
memory_graph works because it queries SQLite directly via storage.get_memory_subgraph().
This rewrites explore.rs to follow the same pattern as graph.rs:
- Remove CognitiveEngine dependency, use Storage directly
- associations: queries depth-1 subgraph for neighbors
- chain: pulls neighborhoods around both endpoints, builds adjacency list,
runs BFS with priority queue (ported from chains.rs algorithm)
- bridges: reuses chain logic, extracts intermediate nodes by frequency
Also updates the call site in server.rs to pass storage instead of cognitive.
Adds integration tests that insert actual connections and verify non-empty results.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
3 new MCP tools (16 → 19 total):
- importance_score: 4-channel neuroscience importance scoring (novelty/arousal/reward/attention)
- session_checkpoint: batch smart_ingest up to 20 items with PE Gating
- find_duplicates: cosine similarity clustering with union-find for dedup
CLI: vestige ingest command for memory ingestion via command line
Core: made get_node_embedding public, added get_all_embeddings for dedup scanning
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Add web dashboard (axum) on port 3927 with memory browser, search, and
system stats. New MCP tools: memory_timeline, memory_changelog,
health_check, consolidate, stats, backup, export, gc. Search now supports
detail_level (brief/summary/full) to control token usage. Add backup_to()
and get_recent_state_transitions() to storage layer. Bump to v1.2.0.
P0 fixes:
- Add `vestige backup <path>` — full DB copy with WAL checkpoint flush
- Add `vestige export --format json|jsonl [--tags] [--since] <path>` —
paginated memory export with tag/date filtering
- Add `vestige gc --min-retention 0.1 [--max-age-days] [--dry-run] [--yes]`
— bulk cleanup of stale memories with safety prompts
- Fix apply_decay() scaling: batched pagination (500 rows/batch) with
explicit transactions instead of loading all nodes into memory
- Fix hidden MCP resources: memory://insights and memory://consolidation-log
now listed in resources/list (were implemented but undiscoverable)
P1 fixes:
- Add auto-consolidation on server startup: FSRS-6 decay runs in background
after 2s delay, only if last consolidation was >6 hours ago
- Add encryption at rest via SQLCipher feature flag: use --features encryption
with VESTIGE_ENCRYPTION_KEY env var (bundled-sqlite and encryption are
mutually exclusive)
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Route ingest tool through smart_ingest (Prediction Error Gating) to
prevent duplicate memories when content is similar to existing entries
- Fix Intel Mac release build: use macos-13 runner for x86_64-apple-darwin
(macos-latest is now ARM64, causing silent cross-compile failures)
- Sync npm package version to 1.1.2 (was 1.0.0 in package.json, 1.1.0
in postinstall.js BINARY_VERSION)
- Add vestige-restore to npm makeExecutable list
- Remove abandoned packages/core/ TypeScript package (pre-Rust implementation
referencing FSRS-5, chromadb, ollama — 32K lines of dead code)
- Sync workspace Cargo.toml version to 1.1.2
Closes#5
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Add #![allow(dead_code)] to deprecated tool modules (kept for
backwards compatibility but not exposed in MCP tool list)
- Mark unused functions with #[allow(dead_code)] annotations
- Fix unused variable warnings (prefix with _)
- Apply clippy auto-fixes for redundant closures and derives
- Fix test to account for protocol version negotiation
- Reorganize tools/mod.rs to clarify active vs deprecated tools
Security review: LOW RISK - no critical vulnerabilities found
Dead code review: deprecated tools properly annotated
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Fix silent errors in stdio.rs: clients now receive fallback error
responses instead of hanging when JSON serialization fails
- Fix UTF-8 panics in keyword.rs: use char-aware slicing instead of
byte offsets for query sanitization and term highlighting
- Fix UTF-8 panics in prospective_memory.rs: replace hard-coded byte
offsets with char-aware slicing for natural language parsing
- Fix UTF-8 panics in git.rs: convert byte positions to char positions
before slicing commit messages
- Fix feature flag bug in vestige-mcp: add proper [features] section
to forward embeddings and vector-search features from vestige-core,
enabling the #[cfg(feature = "embeddings")] initialization code
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
When embeddings fail to initialize in the MCP server context (e.g., due
to working directory issues), the error was silently swallowed and
smart_ingest would fall back to regular ingest without explanation.
Changes:
- Add init_embeddings() method to Storage for explicit initialization
- Initialize embeddings at MCP server startup with error logging
- Add check_ready() method to EmbeddingService for error access
- Log warning when is_ready() returns false
Now users will see clear error messages like:
"Failed to initialize embedding service: ..."
"Hint: Check FASTEMBED_CACHE_PATH or ensure ~/.fastembed_cache exists"
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Claude Desktop requests protocol version 2025-06-18 but Vestige was
responding with 2025-11-25, causing Claude Desktop to disconnect.
Now the server negotiates: if the client requests an older version,
use it. This maintains backward compatibility with older clients.
Fixes: Claude Desktop "Server transport closed unexpectedly" error
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Users were seeing 30 tools in /mcp which was overwhelming. Now only 8
essential tools are listed:
1. search - unified hybrid search
2. memory - get/delete/state operations
3. codebase - patterns and decisions
4. intention - prospective memory
5. ingest - add memories
6. smart_ingest - intelligent ingestion
7. promote_memory - thumbs up
8. demote_memory - thumbs down
Deprecated tools (recall, semantic_search, etc.) still work internally
for backward compatibility but are no longer listed.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Replace BGE-base-en-v1.5 with nomic-embed-text-v1.5
- 8192 token context window (vs 512 for BGE)
- Matryoshka representation learning support
- Fully open source with training data released
- Same 768 dimensions, no schema changes required
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
FSRS-6 spaced repetition, spreading activation, synaptic tagging,
hippocampal indexing, and 130 years of memory research.
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
