mirror of
https://github.com/trustgraph-ai/trustgraph.git
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* Bump setup.py versions for 1.1 * PoC MCP server (#419) * Very initial MCP server PoC for TrustGraph * Put service on port 8000 * Add MCP container and packages to buildout * Update docs for API/CLI changes in 1.0 (#421) * Update some API basics for the 0.23/1.0 API change * Add MCP container push (#425) * Add command args to the MCP server (#426) * Host and port parameters * Added websocket arg * More docs * MCP client support (#427) - MCP client service - Tool request/response schema - API gateway support for mcp-tool - Message translation for tool request & response - Make mcp-tool using configuration service for information about where the MCP services are. * Feature/react call mcp (#428) Key Features - MCP Tool Integration: Added core MCP tool support with ToolClientSpec and ToolClient classes - API Enhancement: New mcp_tool method for flow-specific tool invocation - CLI Tooling: New tg-invoke-mcp-tool command for testing MCP integration - React Agent Enhancement: Fixed and improved multi-tool invocation capabilities - Tool Management: Enhanced CLI for tool configuration and management Changes - Added MCP tool invocation to API with flow-specific integration - Implemented ToolClientSpec and ToolClient for tool call handling - Updated agent-manager-react to invoke MCP tools with configurable types - Enhanced CLI with new commands and improved help text - Added comprehensive documentation for new CLI commands - Improved tool configuration management Testing - Added tg-invoke-mcp-tool CLI command for isolated MCP integration testing - Enhanced agent capability to invoke multiple tools simultaneously * Test suite executed from CI pipeline (#433) * Test strategy & test cases * Unit tests * Integration tests * Extending test coverage (#434) * Contract tests * Testing embeedings * Agent unit tests * Knowledge pipeline tests * Turn on contract tests * Increase storage test coverage (#435) * Fixing storage and adding tests * PR pipeline only runs quick tests * Empty configuration is returned as empty list, previously was not in response (#436) * Update config util to take files as well as command-line text (#437) * Updated CLI invocation and config model for tools and mcp (#438) * Updated CLI invocation and config model for tools and mcp * CLI anomalies * Tweaked the MCP tool implementation for new model * Update agent implementation to match the new model * Fix agent tools, now all tested * Fixed integration tests * Fix MCP delete tool params * Update Python deps to 1.2 * Update to enable knowledge extraction using the agent framework (#439) * Implement KG extraction agent (kg-extract-agent) * Using ReAct framework (agent-manager-react) * ReAct manager had an issue when emitting JSON, which conflicts which ReAct manager's own JSON messages, so refactored ReAct manager to use traditional ReAct messages, non-JSON structure. * Minor refactor to take the prompt template client out of prompt-template so it can be more readily used by other modules. kg-extract-agent uses this framework. * Migrate from setup.py to pyproject.toml (#440) * Converted setup.py to pyproject.toml * Modern package infrastructure as recommended by py docs * Install missing build deps (#441) * Install missing build deps (#442) * Implement logging strategy (#444) * Logging strategy and convert all prints() to logging invocations * Fix/startup failure (#445) * Fix loggin startup problems * Fix logging startup problems (#446) * Fix logging startup problems (#447) * Fixed Mistral OCR to use current API (#448) * Fixed Mistral OCR to use current API * Added PDF decoder tests * Fix Mistral OCR ident to be standard pdf-decoder (#450) * Fix Mistral OCR ident to be standard pdf-decoder * Correct test * Schema structure refactor (#451) * Write schema refactor spec * Implemented schema refactor spec * Structure data mvp (#452) * Structured data tech spec * Architecture principles * New schemas * Updated schemas and specs * Object extractor * Add .coveragerc * New tests * Cassandra object storage * Trying to object extraction working, issues exist * Validate librarian collection (#453) * Fix token chunker, broken API invocation (#454) * Fix token chunker, broken API invocation (#455) * Knowledge load utility CLI (#456) * Knowledge loader * More tests
479 lines
No EOL
17 KiB
Python
479 lines
No EOL
17 KiB
Python
"""
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Unit tests for the load_knowledge CLI module.
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Tests the business logic of loading triples and entity contexts from Turtle files
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while mocking WebSocket connections and external dependencies.
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"""
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import pytest
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import json
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import tempfile
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import asyncio
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from unittest.mock import AsyncMock, Mock, patch, mock_open, MagicMock
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from pathlib import Path
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from trustgraph.cli.load_knowledge import KnowledgeLoader, main
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@pytest.fixture
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def sample_turtle_content():
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"""Sample Turtle RDF content for testing."""
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return """
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@prefix ex: <http://example.org/> .
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@prefix foaf: <http://xmlns.com/foaf/0.1/> .
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ex:john foaf:name "John Smith" ;
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foaf:age "30" ;
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foaf:knows ex:mary .
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ex:mary foaf:name "Mary Johnson" ;
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foaf:email "mary@example.com" .
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"""
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@pytest.fixture
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def temp_turtle_file(sample_turtle_content):
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"""Create a temporary Turtle file for testing."""
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with tempfile.NamedTemporaryFile(mode='w', suffix='.ttl', delete=False) as f:
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f.write(sample_turtle_content)
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f.flush()
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yield f.name
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# Cleanup
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Path(f.name).unlink(missing_ok=True)
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@pytest.fixture
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def mock_websocket():
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"""Mock WebSocket connection."""
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mock_ws = MagicMock()
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async def async_send(data):
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return None
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async def async_recv():
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return ""
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async def async_close():
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return None
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mock_ws.send = Mock(side_effect=async_send)
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mock_ws.recv = Mock(side_effect=async_recv)
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mock_ws.close = Mock(side_effect=async_close)
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return mock_ws
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@pytest.fixture
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def knowledge_loader():
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"""Create a KnowledgeLoader instance with test parameters."""
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return KnowledgeLoader(
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files=["test.ttl"],
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flow="test-flow",
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user="test-user",
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collection="test-collection",
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document_id="test-doc-123",
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url="ws://test.example.com/"
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)
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class TestKnowledgeLoader:
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"""Test the KnowledgeLoader class business logic."""
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def test_init_constructs_urls_correctly(self):
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"""Test that URLs are constructed properly."""
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loader = KnowledgeLoader(
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files=["test.ttl"],
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flow="my-flow",
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user="user1",
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collection="col1",
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document_id="doc1",
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url="ws://example.com/"
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)
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assert loader.triples_url == "ws://example.com/api/v1/flow/my-flow/import/triples"
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assert loader.entity_contexts_url == "ws://example.com/api/v1/flow/my-flow/import/entity-contexts"
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assert loader.user == "user1"
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assert loader.collection == "col1"
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assert loader.document_id == "doc1"
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def test_init_adds_trailing_slash(self):
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"""Test that trailing slash is added to URL if missing."""
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loader = KnowledgeLoader(
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files=["test.ttl"],
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flow="my-flow",
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user="user1",
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collection="col1",
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document_id="doc1",
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url="ws://example.com" # No trailing slash
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)
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assert loader.triples_url == "ws://example.com/api/v1/flow/my-flow/import/triples"
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@pytest.mark.asyncio
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async def test_load_triples_sends_correct_messages(self, temp_turtle_file, mock_websocket):
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"""Test that triple loading sends correctly formatted messages."""
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loader = KnowledgeLoader(
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files=[temp_turtle_file],
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flow="test-flow",
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user="test-user",
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collection="test-collection",
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document_id="test-doc"
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)
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await loader.load_triples(temp_turtle_file, mock_websocket)
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# Verify WebSocket send was called
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assert mock_websocket.send.call_count > 0
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# Check message format for one of the calls
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sent_messages = [json.loads(call.args[0]) for call in mock_websocket.send.call_args_list]
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# Verify message structure
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sample_message = sent_messages[0]
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assert "metadata" in sample_message
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assert "triples" in sample_message
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metadata = sample_message["metadata"]
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assert metadata["id"] == "test-doc"
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assert metadata["user"] == "test-user"
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assert metadata["collection"] == "test-collection"
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assert isinstance(metadata["metadata"], list)
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triple = sample_message["triples"][0]
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assert "s" in triple
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assert "p" in triple
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assert "o" in triple
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# Check Value structure
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assert "v" in triple["s"]
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assert "e" in triple["s"]
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assert triple["s"]["e"] is True # Subject should be URI
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@pytest.mark.asyncio
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async def test_load_entity_contexts_processes_literals_only(self, temp_turtle_file, mock_websocket):
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"""Test that entity contexts are created only for literals."""
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loader = KnowledgeLoader(
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files=[temp_turtle_file],
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flow="test-flow",
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user="test-user",
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collection="test-collection",
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document_id="test-doc"
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)
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await loader.load_entity_contexts(temp_turtle_file, mock_websocket)
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# Get all sent messages
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sent_messages = [json.loads(call.args[0]) for call in mock_websocket.send.call_args_list]
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# Verify we got entity context messages
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assert len(sent_messages) > 0
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for message in sent_messages:
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assert "metadata" in message
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assert "entities" in message
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metadata = message["metadata"]
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assert metadata["id"] == "test-doc"
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assert metadata["user"] == "test-user"
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assert metadata["collection"] == "test-collection"
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entity_context = message["entities"][0]
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assert "entity" in entity_context
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assert "context" in entity_context
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entity = entity_context["entity"]
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assert "v" in entity
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assert "e" in entity
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assert entity["e"] is True # Entity should be URI (subject)
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# Context should be a string (the literal value)
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assert isinstance(entity_context["context"], str)
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@pytest.mark.asyncio
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async def test_load_entity_contexts_skips_uri_objects(self, mock_websocket):
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"""Test that URI objects don't generate entity contexts."""
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# Create turtle with only URI objects (no literals)
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turtle_content = """
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@prefix ex: <http://example.org/> .
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ex:john ex:knows ex:mary .
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ex:mary ex:knows ex:bob .
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"""
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with tempfile.NamedTemporaryFile(mode='w', suffix='.ttl', delete=False) as f:
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f.write(turtle_content)
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f.flush()
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loader = KnowledgeLoader(
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files=[f.name],
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flow="test-flow",
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user="test-user",
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collection="test-collection",
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document_id="test-doc"
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)
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await loader.load_entity_contexts(f.name, mock_websocket)
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Path(f.name).unlink(missing_ok=True)
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# Should not send any messages since there are no literals
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mock_websocket.send.assert_not_called()
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@pytest.mark.asyncio
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@patch('trustgraph.cli.load_knowledge.connect')
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async def test_run_calls_both_loaders(self, mock_connect, knowledge_loader, temp_turtle_file):
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"""Test that run() calls both triple and entity context loaders."""
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knowledge_loader.files = [temp_turtle_file]
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# Create a simple mock websocket
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mock_ws = MagicMock()
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async def mock_send(data):
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pass
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mock_ws.send = mock_send
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# Create async context manager mock
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async def mock_aenter(self):
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return mock_ws
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async def mock_aexit(self, exc_type, exc_val, exc_tb):
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return None
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mock_connection = MagicMock()
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mock_connection.__aenter__ = mock_aenter
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mock_connection.__aexit__ = mock_aexit
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mock_connect.return_value = mock_connection
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# Create AsyncMock objects that can track calls properly
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mock_load_triples = AsyncMock(return_value=None)
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mock_load_contexts = AsyncMock(return_value=None)
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with patch.object(knowledge_loader, 'load_triples', mock_load_triples), \
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patch.object(knowledge_loader, 'load_entity_contexts', mock_load_contexts):
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await knowledge_loader.run()
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# Verify both methods were called
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mock_load_triples.assert_called_once_with(temp_turtle_file, mock_ws)
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mock_load_contexts.assert_called_once_with(temp_turtle_file, mock_ws)
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# Verify WebSocket connections were made to both URLs
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assert mock_connect.call_count == 2
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class TestCLIArgumentParsing:
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"""Test CLI argument parsing and main function."""
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@patch('trustgraph.cli.load_knowledge.KnowledgeLoader')
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@patch('trustgraph.cli.load_knowledge.asyncio.run')
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def test_main_parses_args_correctly(self, mock_asyncio_run, mock_loader_class):
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"""Test that main() parses arguments correctly."""
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mock_loader_instance = MagicMock()
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mock_loader_class.return_value = mock_loader_instance
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test_args = [
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'tg-load-knowledge',
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'-i', 'doc-123',
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'-f', 'my-flow',
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'-U', 'my-user',
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'-C', 'my-collection',
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'-u', 'ws://custom.example.com/',
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'file1.ttl',
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'file2.ttl'
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]
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with patch('sys.argv', test_args):
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main()
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# Verify KnowledgeLoader was instantiated with correct args
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mock_loader_class.assert_called_once_with(
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document_id='doc-123',
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url='ws://custom.example.com/',
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flow='my-flow',
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files=['file1.ttl', 'file2.ttl'],
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user='my-user',
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collection='my-collection'
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)
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# Verify asyncio.run was called once
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mock_asyncio_run.assert_called_once()
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@patch('trustgraph.cli.load_knowledge.KnowledgeLoader')
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@patch('trustgraph.cli.load_knowledge.asyncio.run')
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def test_main_uses_defaults(self, mock_asyncio_run, mock_loader_class):
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"""Test that main() uses default values when not specified."""
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mock_loader_instance = MagicMock()
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mock_loader_class.return_value = mock_loader_instance
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test_args = [
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'tg-load-knowledge',
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'-i', 'doc-123',
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'file1.ttl'
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]
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with patch('sys.argv', test_args):
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main()
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# Verify defaults were used
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call_args = mock_loader_class.call_args[1]
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assert call_args['flow'] == 'default'
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assert call_args['user'] == 'trustgraph'
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assert call_args['collection'] == 'default'
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assert call_args['url'] == 'ws://localhost:8088/'
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class TestErrorHandling:
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"""Test error handling scenarios."""
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@pytest.mark.asyncio
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async def test_load_triples_handles_invalid_turtle(self, mock_websocket):
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"""Test handling of invalid Turtle content."""
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# Create file with invalid Turtle content
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with tempfile.NamedTemporaryFile(mode='w', suffix='.ttl', delete=False) as f:
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f.write("Invalid Turtle Content {{{")
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f.flush()
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loader = KnowledgeLoader(
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files=[f.name],
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flow="test-flow",
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user="test-user",
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collection="test-collection",
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document_id="test-doc"
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)
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# Should raise an exception for invalid Turtle
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with pytest.raises(Exception):
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await loader.load_triples(f.name, mock_websocket)
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Path(f.name).unlink(missing_ok=True)
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@pytest.mark.asyncio
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async def test_load_entity_contexts_handles_invalid_turtle(self, mock_websocket):
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"""Test handling of invalid Turtle content in entity contexts."""
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# Create file with invalid Turtle content
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with tempfile.NamedTemporaryFile(mode='w', suffix='.ttl', delete=False) as f:
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f.write("Invalid Turtle Content {{{")
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f.flush()
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loader = KnowledgeLoader(
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files=[f.name],
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flow="test-flow",
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user="test-user",
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collection="test-collection",
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document_id="test-doc"
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)
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# Should raise an exception for invalid Turtle
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with pytest.raises(Exception):
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await loader.load_entity_contexts(f.name, mock_websocket)
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Path(f.name).unlink(missing_ok=True)
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@pytest.mark.asyncio
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@patch('trustgraph.cli.load_knowledge.connect')
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@patch('builtins.print') # Mock print to avoid output during tests
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async def test_run_handles_connection_errors(self, mock_print, mock_connect, knowledge_loader, temp_turtle_file):
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"""Test handling of WebSocket connection errors."""
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knowledge_loader.files = [temp_turtle_file]
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# Mock connection failure
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mock_connect.side_effect = ConnectionError("Failed to connect")
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# Should not raise exception, just print error
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await knowledge_loader.run()
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@patch('trustgraph.cli.load_knowledge.KnowledgeLoader')
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@patch('trustgraph.cli.load_knowledge.asyncio.run')
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@patch('trustgraph.cli.load_knowledge.time.sleep')
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@patch('builtins.print') # Mock print to avoid output during tests
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def test_main_retries_on_exception(self, mock_print, mock_sleep, mock_asyncio_run, mock_loader_class):
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"""Test that main() retries on exceptions."""
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mock_loader_instance = MagicMock()
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mock_loader_class.return_value = mock_loader_instance
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# First call raises exception, second succeeds
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mock_asyncio_run.side_effect = [Exception("Test error"), None]
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test_args = [
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'tg-load-knowledge',
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'-i', 'doc-123',
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'file1.ttl'
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]
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with patch('sys.argv', test_args):
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main()
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# Should have been called twice (first failed, second succeeded)
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assert mock_asyncio_run.call_count == 2
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mock_sleep.assert_called_once_with(10)
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class TestDataValidation:
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"""Test data validation and edge cases."""
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@pytest.mark.asyncio
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async def test_empty_turtle_file(self, mock_websocket):
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"""Test handling of empty Turtle files."""
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with tempfile.NamedTemporaryFile(mode='w', suffix='.ttl', delete=False) as f:
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f.write("") # Empty file
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f.flush()
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loader = KnowledgeLoader(
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files=[f.name],
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flow="test-flow",
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user="test-user",
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collection="test-collection",
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document_id="test-doc"
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)
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await loader.load_triples(f.name, mock_websocket)
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await loader.load_entity_contexts(f.name, mock_websocket)
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# Should not send any messages for empty file
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mock_websocket.send.assert_not_called()
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Path(f.name).unlink(missing_ok=True)
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@pytest.mark.asyncio
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async def test_turtle_with_mixed_literals_and_uris(self, mock_websocket):
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"""Test handling of Turtle with mixed literal and URI objects."""
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turtle_content = """
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@prefix ex: <http://example.org/> .
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ex:john ex:name "John Smith" ;
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ex:age "25" ;
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ex:knows ex:mary ;
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ex:city "New York" .
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ex:mary ex:name "Mary Johnson" .
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"""
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with tempfile.NamedTemporaryFile(mode='w', suffix='.ttl', delete=False) as f:
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f.write(turtle_content)
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f.flush()
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loader = KnowledgeLoader(
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files=[f.name],
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flow="test-flow",
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user="test-user",
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collection="test-collection",
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document_id="test-doc"
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)
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await loader.load_entity_contexts(f.name, mock_websocket)
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sent_messages = [json.loads(call.args[0]) for call in mock_websocket.send.call_args_list]
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|
|
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# Should have 4 entity contexts (for the 4 literals: "John Smith", "25", "New York", "Mary Johnson")
|
|
# URI ex:mary should be skipped
|
|
assert len(sent_messages) == 4
|
|
|
|
# Verify all contexts are for literals (subjects should be URIs)
|
|
contexts = []
|
|
for message in sent_messages:
|
|
entity_context = message["entities"][0]
|
|
assert entity_context["entity"]["e"] is True # Subject is URI
|
|
contexts.append(entity_context["context"])
|
|
|
|
assert "John Smith" in contexts
|
|
assert "25" in contexts
|
|
assert "New York" in contexts
|
|
assert "Mary Johnson" in contexts
|
|
|
|
Path(f.name).unlink(missing_ok=True) |