trustgraph/trustgraph-flow/trustgraph/storage/triples/memgraph/write.py
cybermaggedon c603caa3cc
Fix neo4j: container doesn't start currently (#264)
* Adjust Neo4j memory settings to avoid startup fail

* Upgrade Neo4j to community 5.26.0

* Add Neo4j indexes
2025-01-11 12:44:49 +00:00

260 lines
7.4 KiB
Python
Executable file

"""
Graph writer. Input is graph edge. Writes edges to Memgraph.
"""
import pulsar
import base64
import os
import argparse
import time
from neo4j import GraphDatabase
from .... schema import Triples
from .... schema import triples_store_queue
from .... log_level import LogLevel
from .... base import Consumer
module = ".".join(__name__.split(".")[1:-1])
default_input_queue = triples_store_queue
default_subscriber = module
default_graph_host = 'bolt://memgraph:7687'
default_username = 'memgraph'
default_password = 'password'
default_database = 'memgraph'
class Processor(Consumer):
def __init__(self, **params):
input_queue = params.get("input_queue", default_input_queue)
subscriber = params.get("subscriber", default_subscriber)
graph_host = params.get("graph_host", default_graph_host)
username = params.get("username", default_username)
password = params.get("password", default_password)
database = params.get("database", default_database)
super(Processor, self).__init__(
**params | {
"input_queue": input_queue,
"subscriber": subscriber,
"input_schema": Triples,
"graph_host": graph_host,
}
)
self.db = database
self.io = GraphDatabase.driver(graph_host, auth=(username, password))
with self.io.session(database=self.db) as session:
self.create_indexes(session)
def create_indexes(self, session):
# Race condition, index creation failure is ignored. Right thing
# to do if the index already exists. Wrong thing to do if it's
# because the store is not up yet
# In real-world cases, Memgraph will start up quicker than Pulsar
# and this process will restart several times until Pulsar arrives,
# so should be safe
print("Create indexes...", flush=True)
try:
session.run(
"CREATE INDEX ON :Node",
)
except Exception as e:
print(e, flush=True)
# Maybe index already exists
print("Index create failure ignored", flush=True)
try:
session.run(
"CREATE INDEX ON :Node(uri)"
)
except Exception as e:
print(e, flush=True)
# Maybe index already exists
print("Index create failure ignored", flush=True)
try:
session.run(
"CREATE INDEX ON :Literal",
)
except Exception as e:
print(e, flush=True)
# Maybe index already exists
print("Index create failure ignored", flush=True)
try:
session.run(
"CREATE INDEX ON :Literal(value)"
)
except Exception as e:
print(e, flush=True)
# Maybe index already exists
print("Index create failure ignored", flush=True)
print("Index creation done", flush=True)
def create_node(self, uri):
print("Create node", uri)
summary = self.io.execute_query(
"MERGE (n:Node {uri: $uri})",
uri=uri,
database_=self.db,
).summary
print("Created {nodes_created} nodes in {time} ms.".format(
nodes_created=summary.counters.nodes_created,
time=summary.result_available_after
))
def create_literal(self, value):
print("Create literal", value)
summary = self.io.execute_query(
"MERGE (n:Literal {value: $value})",
value=value,
database_=self.db,
).summary
print("Created {nodes_created} nodes in {time} ms.".format(
nodes_created=summary.counters.nodes_created,
time=summary.result_available_after
))
def relate_node(self, src, uri, dest):
print("Create node rel", src, uri, dest)
summary = self.io.execute_query(
"MATCH (src:Node {uri: $src}) "
"MATCH (dest:Node {uri: $dest}) "
"MERGE (src)-[:Rel {uri: $uri}]->(dest)",
src=src, dest=dest, uri=uri,
database_=self.db,
).summary
print("Created {nodes_created} nodes in {time} ms.".format(
nodes_created=summary.counters.nodes_created,
time=summary.result_available_after
))
def relate_literal(self, src, uri, dest):
print("Create literal rel", src, uri, dest)
summary = self.io.execute_query(
"MATCH (src:Node {uri: $src}) "
"MATCH (dest:Literal {value: $dest}) "
"MERGE (src)-[:Rel {uri: $uri}]->(dest)",
src=src, dest=dest, uri=uri,
database_=self.db,
).summary
print("Created {nodes_created} nodes in {time} ms.".format(
nodes_created=summary.counters.nodes_created,
time=summary.result_available_after
))
def create_triple(self, tx, t):
# Create new s node with given uri, if not exists
result = tx.run(
"MERGE (n:Node {uri: $uri})",
uri=t.s.value
)
if t.o.is_uri:
# Create new o node with given uri, if not exists
result = tx.run(
"MERGE (n:Node {uri: $uri})",
uri=t.o.value
)
result = tx.run(
"MATCH (src:Node {uri: $src}) "
"MATCH (dest:Node {uri: $dest}) "
"MERGE (src)-[:Rel {uri: $uri}]->(dest)",
src=t.s.value, dest=t.o.value, uri=t.p.value,
)
else:
# Create new o literal with given uri, if not exists
result = tx.run(
"MERGE (n:Literal {value: $value})",
value=t.o.value
)
result = tx.run(
"MATCH (src:Node {uri: $src}) "
"MATCH (dest:Literal {value: $dest}) "
"MERGE (src)-[:Rel {uri: $uri}]->(dest)",
src=t.s.value, dest=t.o.value, uri=t.p.value,
)
def handle(self, msg):
v = msg.value()
for t in v.triples:
# self.create_node(t.s.value)
# if t.o.is_uri:
# self.create_node(t.o.value)
# self.relate_node(t.s.value, t.p.value, t.o.value)
# else:
# self.create_literal(t.o.value)
# self.relate_literal(t.s.value, t.p.value, t.o.value)
with self.io.session(database=self.db) as session:
session.execute_write(self.create_triple, t)
@staticmethod
def add_args(parser):
Consumer.add_args(
parser, default_input_queue, default_subscriber,
)
parser.add_argument(
'-g', '--graph_host',
default=default_graph_host,
help=f'Graph host (default: {default_graph_host})'
)
parser.add_argument(
'--username',
default=default_username,
help=f'Memgraph username (default: {default_username})'
)
parser.add_argument(
'--password',
default=default_password,
help=f'Memgraph password (default: {default_password})'
)
parser.add_argument(
'--database',
default=default_database,
help=f'Memgraph database (default: {default_database})'
)
def run():
Processor.start(module, __doc__)