trustgraph/trustgraph-cli/trustgraph/cli/save_doc_embeds.py
cybermaggedon 89be656990
Release/v1.2 (#457)
* Bump setup.py versions for 1.1

* PoC MCP server (#419)

* Very initial MCP server PoC for TrustGraph

* Put service on port 8000

* Add MCP container and packages to buildout

* Update docs for API/CLI changes in 1.0 (#421)

* Update some API basics for the 0.23/1.0 API change

* Add MCP container push (#425)

* Add command args to the MCP server (#426)

* Host and port parameters

* Added websocket arg

* More docs

* MCP client support (#427)

- MCP client service
- Tool request/response schema
- API gateway support for mcp-tool
- Message translation for tool request & response
- Make mcp-tool using configuration service for information
  about where the MCP services are.

* Feature/react call mcp (#428)

Key Features

  - MCP Tool Integration: Added core MCP tool support with ToolClientSpec and ToolClient classes
  - API Enhancement: New mcp_tool method for flow-specific tool invocation
  - CLI Tooling: New tg-invoke-mcp-tool command for testing MCP integration
  - React Agent Enhancement: Fixed and improved multi-tool invocation capabilities
  - Tool Management: Enhanced CLI for tool configuration and management

Changes

  - Added MCP tool invocation to API with flow-specific integration
  - Implemented ToolClientSpec and ToolClient for tool call handling
  - Updated agent-manager-react to invoke MCP tools with configurable types
  - Enhanced CLI with new commands and improved help text
  - Added comprehensive documentation for new CLI commands
  - Improved tool configuration management

Testing

  - Added tg-invoke-mcp-tool CLI command for isolated MCP integration testing
  - Enhanced agent capability to invoke multiple tools simultaneously

* Test suite executed from CI pipeline (#433)

* Test strategy & test cases

* Unit tests

* Integration tests

* Extending test coverage (#434)

* Contract tests

* Testing embeedings

* Agent unit tests

* Knowledge pipeline tests

* Turn on contract tests

* Increase storage test coverage (#435)

* Fixing storage and adding tests

* PR pipeline only runs quick tests

* Empty configuration is returned as empty list, previously was not in response (#436)

* Update config util to take files as well as command-line text (#437)

* Updated CLI invocation and config model for tools and mcp (#438)

* Updated CLI invocation and config model for tools and mcp

* CLI anomalies

* Tweaked the MCP tool implementation for new model

* Update agent implementation to match the new model

* Fix agent tools, now all tested

* Fixed integration tests

* Fix MCP delete tool params

* Update Python deps to 1.2

* Update to enable knowledge extraction using the agent framework (#439)

* Implement KG extraction agent (kg-extract-agent)

* Using ReAct framework (agent-manager-react)
 
* ReAct manager had an issue when emitting JSON, which conflicts which ReAct manager's own JSON messages, so refactored ReAct manager to use traditional ReAct messages, non-JSON structure.
 
* Minor refactor to take the prompt template client out of prompt-template so it can be more readily used by other modules. kg-extract-agent uses this framework.

* Migrate from setup.py to pyproject.toml (#440)

* Converted setup.py to pyproject.toml

* Modern package infrastructure as recommended by py docs

* Install missing build deps (#441)

* Install missing build deps (#442)

* Implement logging strategy (#444)

* Logging strategy and convert all prints() to logging invocations

* Fix/startup failure (#445)

* Fix loggin startup problems

* Fix logging startup problems (#446)

* Fix logging startup problems (#447)

* Fixed Mistral OCR to use current API (#448)

* Fixed Mistral OCR to use current API

* Added PDF decoder tests

* Fix Mistral OCR ident to be standard pdf-decoder (#450)

* Fix Mistral OCR ident to be standard pdf-decoder

* Correct test

* Schema structure refactor (#451)

* Write schema refactor spec

* Implemented schema refactor spec

* Structure data mvp (#452)

* Structured data tech spec

* Architecture principles

* New schemas

* Updated schemas and specs

* Object extractor

* Add .coveragerc

* New tests

* Cassandra object storage

* Trying to object extraction working, issues exist

* Validate librarian collection (#453)

* Fix token chunker, broken API invocation (#454)

* Fix token chunker, broken API invocation (#455)

* Knowledge load utility CLI (#456)

* Knowledge loader

* More tests
2025-08-18 20:56:09 +01:00

203 lines
5.1 KiB
Python

"""
This utility connects to a running TrustGraph through the API and creates
a document embeddings core from the data streaming through the processing
queues. For completeness of data, tg-save-doc-embeds should be initiated
before data loading takes place. The default output format, msgpack
should be used. JSON output format is also available - msgpack produces
a more compact representation, which is also more performant to load.
"""
import aiohttp
import asyncio
import msgpack
import json
import sys
import argparse
import os
import signal
class Running:
def __init__(self): self.running = True
def get(self): return self.running
def stop(self): self.running = False
async def fetch_de(running, queue, user, collection, url):
async with aiohttp.ClientSession() as session:
async with session.ws_connect(url) as ws:
while running.get():
try:
msg = await asyncio.wait_for(ws.receive(), 1)
except:
continue
if msg.type == aiohttp.WSMsgType.TEXT:
data = msg.json()
if user:
if data["metadata"]["user"] != user:
continue
if collection:
if data["metadata"]["collection"] != collection:
continue
await queue.put([
"de",
{
"m": {
"i": data["metadata"]["id"],
"m": data["metadata"]["metadata"],
"u": data["metadata"]["user"],
"c": data["metadata"]["collection"],
},
"c": [
{
"c": chunk["chunk"],
"v": chunk["vectors"],
}
for chunk in data["chunks"]
]
}
])
if msg.type == aiohttp.WSMsgType.ERROR:
print("Error")
break
de_counts = 0
async def stats(running):
global t_counts
global de_counts
while running.get():
await asyncio.sleep(2)
print(
f"Document embeddings: {de_counts:10d}"
)
async def output(running, queue, path, format):
global t_counts
global de_counts
with open(path, "wb") as f:
while running.get():
try:
msg = await asyncio.wait_for(queue.get(), 0.5)
except:
# Hopefully it's TimeoutError. Annoying to match since
# it changed in 3.11.
continue
if format == "msgpack":
f.write(msgpack.packb(msg, use_bin_type=True))
else:
f.write(json.dumps(msg).encode("utf-8"))
if msg[0] == "de":
de_counts += 1
print("Output file closed")
async def run(running, **args):
q = asyncio.Queue()
url = args["url"]
flow_id = args["flow_id"]
de_task = asyncio.create_task(
fetch_de(
running=running,
queue=q, user=args["user"], collection=args["collection"],
url = f"{url}api/v1/flow/{flow_id}/export/document-embeddings"
)
)
output_task = asyncio.create_task(
output(
running=running, queue=q,
path=args["output_file"], format=args["format"],
)
)
stats_task = asyncio.create_task(stats(running))
await output_task
await de_task
await stats_task
print("Exiting")
async def main(running):
parser = argparse.ArgumentParser(
prog='tg-save-kg-core',
description=__doc__,
)
default_url = os.getenv("TRUSTGRAPH_API", "http://localhost:8088/")
default_user = "trustgraph"
collection = "default"
parser.add_argument(
'-u', '--url',
default=default_url,
help=f'TrustGraph API URL (default: {default_url})',
)
parser.add_argument(
'-f', '--flow-id',
default="default",
help=f'Flow ID (default: default)'
)
parser.add_argument(
'-o', '--output-file',
# Make it mandatory, difficult to over-write an existing file
required=True,
help=f'Output file'
)
parser.add_argument(
'--format',
default="msgpack",
choices=["msgpack", "json"],
help=f'Output format (default: msgpack)',
)
parser.add_argument(
'--user',
help=f'User ID to filter on (default: no filter)'
)
parser.add_argument(
'--collection',
help=f'Collection ID to filter on (default: no filter)'
)
args = parser.parse_args()
await run(running, **vars(args))
running = Running()
def interrupt(sig, frame):
running.stop()
print('Interrupt')
signal.signal(signal.SIGINT, interrupt)
asyncio.run(main(running))