- biome.json (2.4.16, linter-only) wired as "lint" in all six packages
- scripts/check-effect-laws.ts: Effect-native law enforcement encoding the
adapted beep-effect effect-first/schema-first laws (no native JSON/switch/
sort/fetch/timers, no process.env, no throw new, no Effect.run* outside
boundaries, no Schema-suffixed constants, no node:fs/path, AST-based
pure-data interface detection per law 38/39)
- ratcheting baseline allowlist (95 entries / 290 findings) that must shrink
to documented exemptions only; stale counts fail the gate
- root lint chains turbo lint + law check + native-class inventory
- fix all 163 initial Biome findings: import-type style, templates, two `any`s,
ten non-null assertions (librarian getService gate, A.matchRight in atoms,
ensureNode returning nodes, main.tsx mount guard)
Gates: lint, check:tsgo, build, test (force, 11 tasks) all green.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Finishes the remaining EFFECT_NATIVE_REWRITE_PLAN stages in one verified slice:
- fastify, @fastify/websocket, commander, zod removed from all package manifests
- legacy @modelcontextprotocol/sdk stdio server deleted; effect/unstable/ai McpServer is canonical
- no ManagedRuntime or Effect.runPromise program facades remain in production source
- gateway server/rpc-contract and client rpc/socket moved onto Effect v4 native http/rpc/socket layers
Gates (force-run, no cache): check:tsgo, build, test (96 tests / 11 tasks) all green.
Native-class inventory: zero blocking production classes.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Pipeline fixes:
- Fix agent getting empty response from graph-rag by combining answer +
explain data in single message (RequestResponse returns first msg)
- Fix Doc RAG pipeline: add content field to Qdrant doc payload, seed 10
document chunks, fix type mismatches across base/flow/client
- Forward explainability events from agent's KnowledgeQuery to client
- Add "agent" to TERM_BEARING_RESPONSE_SERVICES for triple translation
- Fix embeddings env var (OLLAMA_URL), user/collection threading, edge
scoring threshold, and various protocol mismatches
Branding:
- Rename TrustGraph → Beep Graph (title, sidebar, settings, about)
- Custom lambda + ThugLife pixel glasses SVG logo component
- Forest green color palette (brand-50 through brand-900)
- SVG favicon + PNG icons (16/32/180/192/512)
- PWA manifest with service worker for offline shell caching
- Splash screen with animated logo pulse on app load
- Ambient glow background with drifting green radial blobs
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Add the full MCP tool pipeline enabling agents to invoke external tools
(like Brave Search) via MCP servers:
- Add ToolRequest/ToolResponse types and mcp-tool topics to @trustgraph/base
- Create McpToolService (FlowProcessor) that connects to external MCP servers
via @modelcontextprotocol/sdk StreamableHTTP transport
- Add createMcpTool() to wire MCP tools into the agent's ReAct loop
- Implement config-driven tool registration in AgentService with backward-
compatible fallback to hardcoded tools
- Add tool filtering by group and state (port of Python tool_filter.py)
- Register mcp-tool in gateway dispatcher and export from @trustgraph/flow
- Fix flow restart race condition: skip restart when flow definitions unchanged
- Update seed config with MCP server config and tool definitions
- Add run scripts for MCP tool service and Brave Search MCP server
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- Fix FalkorDB triples query: client v5 returns objects not arrays, use named field access
- Fix embeddings service: align spec names to "embeddings-request"/"embeddings-response"
- Fix client triplesQuery: read `triples` field instead of `response` from backend
- Fix graph page crash: guard against non-array triples, accept literals as entity nodes
- Add seed:demo script for AI industry knowledge graph (254 triples, 64 entities)
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Two bugs found during end-to-end testing:
1. FlowProcessor never restarted flows when config changed — it only
started them once. Stale NATS JetStream data from previous sessions
caused services to bind to wrong topics. Fix: stop and restart flows
on every config push that includes flow definitions.
2. Gateway publishToTopic sent messages without an id property. Pipeline
FlowProcessor handlers check properties.id and silently return if
missing. Fix: auto-generate a message id when publishing to topics.
Both fixes validated: 13/13 integration tests passing, PDF decoder
correctly receives and processes document messages through the pipeline.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Wire up the query and retrieval side of the pipeline so the agent can
answer questions from stored knowledge:
- Triples query service (FalkorDB) — all SPO pattern queries via NATS
- Graph embeddings query service (Qdrant) — entity vector similarity
- Document embeddings query service (Qdrant) — chunk vector similarity
- Graph RAG service — full concept→entity→traverse→score→synthesize pipeline
- Document RAG service — embed→find chunks→synthesize pipeline
- Runner scripts for chunker, extractor, embeddings (missing from Phase 5)
- Add DocumentEmbeddingsRequest/Response schema types
- Add RAG prompt templates (extract-concepts, edge-scoring, synthesize)
- Add graph/doc embeddings query topics to seed config + flow manager
- Add all pipeline/query/retrieval services to docker-compose
- 8 new runner scripts, 8 new pnpm script aliases
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Add end-to-end document processing pipeline:
- PDF decoder service (pdfjs-dist) extracts text per page from librarian docs
- Ollama native LLM service for local model inference
- FalkorDB triples store FlowProcessor consumer
- Qdrant graph embeddings store FlowProcessor consumer
- Fix spec name collisions in chunker/extractor (input→chunk-input, etc.)
- Gateway /load endpoint to trigger document processing
- Align flow manager blueprint and seed config with full pipeline topics
- Add runner scripts and test coverage for document load
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Marks FlowProcessor and EmbeddingsService constructors as protected
since these classes should only be instantiated via subclasses.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Flow Management Service:
- FlowManagerService (AsyncProcessor) handling list/get/start/stop flows
and list/get blueprints via kebab-case wire format
- Default blueprint with all service topic mappings
- Pushes flow config to config service on start/stop
Config Seeding:
- seed-config.ts script pushes prompt templates (extract-relationships,
extract-definitions, document-prompt, kg-prompt) and default flow
definition via gateway REST API
Integration Tests:
- Librarian CRUD: add-document, list-documents, get-content, delete
- Agent query: verifies routing through gateway to agent service
- Skip flags: SKIP_LIBRARIAN=1, SKIP_AGENT=1
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
