Commit graph

25 commits

Author SHA1 Message Date
cybermaggedon
142dd0231c
release/v2.4 -> master (#924)
* CLI auth migration, document embeddings core lifecycle (#913)

Migrate get_kg_core and put_kg_core CLI tools to use Api/SocketClient
with first-frame auth (fixes broken raw websocket path). Fix wire
format field names (root/vector). Remove ~600 lines of dead raw
websocket code from invoke_graph_rag.py.

Add document embeddings core lifecycle to the knowledge service:
list/get/put/delete/load operations across schema, translator,
Cassandra table store, knowledge manager, gateway registry, REST API,
socket client, and CLI (tg-get-de-core, tg-put-de-core).

Fix delete_kg_core to also clean up document embeddings rows.

* Remove spurious workspace parameter from SPARQL algebra evaluator (#915)

Fix threading of workspace paramater:
- The SPARQL algebra evaluator was threading a workspace parameter
  through every function and passing it to TriplesClient.query(),
  which doesn't accept it. Workspace isolation is handled by pub/sub
  topic routing — the TriplesClient is already scoped to a
  workspace-specific flow, same as GraphRAG. Passing workspace
  explicitly was both incorrect and unnecessary.

Update tests:
- tests/unit/test_query/test_sparql_algebra.py (new) — Tests
  _query_pattern, _eval_bgp, and evaluate() with various algebra
  nodes. Key tests assert workspace is never in tc.query() kwargs,
  plus correctness tests for BGP, JOIN, UNION, SLICE, DISTINCT, and
  edge cases.
- tests/unit/test_retrieval/test_graph_rag.py — Added
  test_triples_query_never_passes_workspace (checks query()) and
  test_follow_edges_never_passes_workspace (checks query_stream()).

* Make all Cassandra and Qdrant I/O async-safe with proper concurrency controls (#916)

Cassandra triples services were using syncronous EntityCentricKnowledgeGraph
methods from async contexts, and connection state was managed with
threading.local which is wrong for asyncio coroutines sharing a single
thread. Qdrant services had no async wrapping at all, blocking the event
loop on every network call. Rows services had unprotected shared state
mutations across concurrent coroutines.

- Add async methods to EntityCentricKnowledgeGraph (async_insert,
  async_get_s/p/o/sp/po/os/spo/all, async_collection_exists,
  async_create_collection, async_delete_collection) using the existing
  cassandra_async.async_execute bridge
- Rewrite triples write + query services: replace threading.local with
  asyncio.Lock + dict cache for per-workspace connections, use async
  ECKG methods for all data operations, keep asyncio.to_thread only for
  one-time blocking ECKG construction
- Wrap all Qdrant calls in asyncio.to_thread across all 6 services
  (doc/graph/row embeddings write + query), add asyncio.Lock + set cache
  for collection existence checks
- Add asyncio.Lock to rows write + query services to protect shared
  state (schemas, sessions, config caches) from concurrent mutation
- Update all affected tests to match new async patterns

* Fixed error only returning a page of results (#921)

The root cause: async_execute only materialises the first result
page (by design — it says so in its docstring). The streaming query
set fetch_size=20 and expected to iterate all results, but only got
the first 20 rows back.

The fix uses
  asyncio.to_thread(lambda: list(tg.session.execute(...)))
which lets the sync driver iterate
all pages in a worker thread — exactly what the pre-async code did.

* Optional test warning suppression (#923)

* Fix test collection module errors & silence upstream Pytest warnings (#823)

* chore: add virtual environment and .env directories to gitignore

* test: filter upstream DeprecationWarning and UserWarning messages

* fix(namespace): remove empty __init__.py files to fix PEP 420 implicit namespace routing for trustgraph sub-packages

* Revert __init__.py deletions

* Add .ini changes but commented out, will be useful at times

---------

Co-authored-by: Salil M <d2kyt@protonmail.com>
2026-05-15 13:02:51 +01:00
cybermaggedon
89cabee1b4
release/v2.4 -> master (#844) 2026-04-22 15:19:57 +01:00
cybermaggedon
22096e07e2
Fix tests broken by the recent RabbitMQ/Cassandra async fixes (#815)
- Fix invalid key in config causing rogue warning
- Fix asyncio test tags
2026-04-16 10:00:18 +01:00
cybermaggedon
d9dc4cbab5
SPARQL query service (#754)
SPARQL 1.1 query service wrapping pub/sub triples interface

Add a backend-agnostic SPARQL query service that parses SPARQL
queries using rdflib, decomposes them into triple pattern lookups
via the existing TriplesClient pub/sub interface, and performs
in-memory joins, filters, and projections.

Includes:
- SPARQL parser, algebra evaluator, expression evaluator, solution
  sequence operations (BGP, JOIN, OPTIONAL, UNION, FILTER, BIND,
  VALUES, GROUP BY, ORDER BY, LIMIT/OFFSET, DISTINCT, aggregates)
- FlowProcessor service with TriplesClientSpec
- Gateway dispatcher, request/response translators, API spec
- Python SDK method (FlowInstance.sparql_query)
- CLI command (tg-invoke-sparql-query)
- Tech spec (docs/tech-specs/sparql-query.md)

New unit tests for SPARQL query
2026-04-02 17:21:39 +01:00
cybermaggedon
57eda65674
Knowledge core processing updated for embeddings interface change (#681)
Knowledge core fixed: 
- trustgraph-flow/trustgraph/tables/knowledge.py - v.vector, v.chunk_id
- trustgraph-base/trustgraph/messaging/translators/document_loading.py -
  chunk.vector
- trustgraph-base/trustgraph/messaging/translators/knowledge.py -
  entity.vector
- trustgraph-flow/trustgraph/gateway/dispatch/serialize.py - entity.vector,
  chunk.vector

Test fixtures fixed:
- tests/unit/test_storage/conftest.py - All mock entities/chunks use vector
- tests/unit/test_query/conftest.py - All mock requests use vector
- tests/unit/test_query/test_doc_embeddings_pinecone_query.py - All mock
  messages use vector

These changes align with commit f2ae0e86 which changed the schema from
vectors: list[list[float]] to vector: list[float].
2026-03-10 13:28:16 +00:00
cybermaggedon
7a6197d8c3
GraphRAG Query-Time Explainability (#677)
Implements full explainability pipeline for GraphRAG queries, enabling
traceability from answers back to source documents.

Renamed throughout for clarity:
- provenance_callback → explain_callback
- provenance_id → explain_id
- provenance_collection → explain_collection
- message_type "provenance" → "explain"
- Queue name "provenance" → "explainability"

GraphRAG queries now emit explainability events as they execute:
1. Session - query text and timestamp
2. Retrieval - edges retrieved from subgraph
3. Selection - selected edges with LLM reasoning (JSONL with id +
   reasoning)
4. Answer - reference to synthesized response

Events stream via explain_callback during query(), enabling
real-time UX.

- Answers stored in librarian service (not inline in graph - too large)
- Document ID as URN: urn:trustgraph:answer:{session_id}
- Graph stores tg:document reference (IRI) to librarian document
- Added librarian producer/consumer to graph-rag service

- get_labelgraph() now returns (labeled_edges, uri_map)
- uri_map maps edge_id(label_s, label_p, label_o) →
  (uri_s, uri_p, uri_o)
- Explainability data stores original URIs, not labels
- Enables tracing edges back to reifying statements via tg:reifies

- Added serialize_triple() to query service (matches storage format)
- get_term_value() now handles TRIPLE type terms
- Enables querying by quoted triple in object position:
  ?stmt tg:reifies <<s p o>>

- Displays real-time explainability events during query
- Resolves rdfs:label for edge components (s, p, o)
- Traces source chain via prov:wasDerivedFrom to root document
- Output: "Source: Chunk 1 → Page 2 → Document Title"
- Label caching to avoid repeated queries

GraphRagResponse:
- explain_id: str | None
- explain_collection: str | None
- message_type: str ("chunk" or "explain")
- end_of_session: bool

trustgraph-base/trustgraph/provenance/:
- namespaces.py - Added TG_DOCUMENT predicate
- triples.py - answer_triples() supports document_id reference
- uris.py - Added edge_selection_uri()

trustgraph-base/trustgraph/schema/services/retrieval.py:
- GraphRagResponse with explain_id, explain_collection, end_of_session

trustgraph-flow/trustgraph/retrieval/graph_rag/:
- graph_rag.py - URI preservation, streaming answer accumulation
- rag.py - Librarian integration, real-time explain emission

trustgraph-flow/trustgraph/query/triples/cassandra/service.py:
- Quoted triple serialization for query matching

trustgraph-cli/trustgraph/cli/invoke_graph_rag.py:
- Full explainability display with label resolution and source tracing
2026-03-10 10:00:01 +00:00
cybermaggedon
f2ae0e8623
Embeddings API scores (#671)
- Put scores in all responses
- Remove unused 'middle' vector layer. Vector of texts -> vector of (vector embedding)
2026-03-09 10:53:44 +00:00
cybermaggedon
3bf8a65409
Fix tests (#666) 2026-03-07 23:38:09 +00:00
cybermaggedon
1809c1f56d
Structured data 2 (#645)
* Structured data refactor - multi-index tables, remove need for manual mods to the Cassandra tables

* Tech spec updated to track implementation
2026-02-23 15:56:29 +00:00
cybermaggedon
00c1ca681b
Entity-centric graph (#633)
* Tech spec for new entity-centric graph schema

* Graph implementation
2026-02-16 13:26:43 +00:00
cybermaggedon
cf0daedefa
Changed schema for Value -> Term, majorly breaking change (#622)
* Changed schema for Value -> Term, majorly breaking change

* Following the schema change, Value -> Term into all processing

* Updated Cassandra for g, p, s, o index patterns (7 indexes)

* Reviewed and updated all tests

* Neo4j, Memgraph and FalkorDB remain broken, will look at once settled down
2026-01-27 13:48:08 +00:00
cybermaggedon
11f41b07ab
Get neo4j to use limit (#618)
* Get neo4j to use limit

* Fix tests - they we exact matching on query strings
2026-01-22 15:16:34 +00:00
cybermaggedon
310a2deb06
Feature/streaming llm phase 1 (#566)
* Tidy up duplicate tech specs in doc directory

* Streaming LLM text-completion service tech spec.

* text-completion and prompt interfaces

* streaming change applied to all LLMs, so far tested with VertexAI

* Skip Pinecone unit tests, upstream module issue is affecting things, tests are passing again

* Added agent streaming, not working and has broken tests
2025-11-26 09:59:10 +00:00
cybermaggedon
6129bb68c1
Fix hard coded vector size (#555)
* Fixed hard-coded embeddings store size

* Vector store lazy-creates collections, different collections for
  different dimension lengths.

* Added tech spec for vector store lifecycle

* Fixed some tests for the new spec
2025-11-10 16:56:51 +00:00
cybermaggedon
fcd15d1833
Collection management part 2 (#522)
* Plumb collection manager into librarian

* Test end-to-end
2025-09-19 16:08:47 +01:00
cybermaggedon
d378db9370
Cassandra performance enhancement (#521)
* Tech spec

* Tech spec complete

* Cassandra multi-table for performance
2025-09-18 19:52:05 +01:00
cybermaggedon
13ff7d765d
Collection management (#520)
* Tech spec

* Refactored Cassanda knowledge graph for single table

* Collection management, librarian services to manage metadata and collection deletion
2025-09-18 15:57:52 +01:00
cybermaggedon
7f57bc6a0a
Feature/memgraph user collection isolation (#510)
* User/collection processing in memgraph

* Update tests
2025-09-10 22:11:35 +01:00
cybermaggedon
c694b12e9c
Feature/neo4j user collection isolation (#509)
* Tech spec

* User/collection separation

* Update tests
2025-09-10 22:11:21 +01:00
cybermaggedon
314ce76b81
Feature/fix milvus (#507)
- Remove object embeddings, were currently broken and not used
- Fixed Milvus collection names

* Updating tests

* Remove unused entrypoint
2025-09-09 21:44:55 +01:00
cybermaggedon
85e669c763
Fixing more Cassandra consistency issues (#488)
* Fixing more Cassandra work

* Fix tests
2025-09-04 00:58:11 +01:00
cybermaggedon
ccaec88a72
Feature/consolidate cassandra config (#483)
* Cassandra consolidation of parameters

* New Cassandra configuration helper

* Implemented Cassanda config refactor

* New tests
2025-09-03 23:41:22 +01:00
cybermaggedon
672e358b2f
Feature/graphql table query (#486)
* Tech spec

* Object query service for Cassandra

* Gateway support for objects-query

* GraphQL query utility

* Filters, ordering
2025-09-03 23:39:11 +01:00
cybermaggedon
f37decea2b
Increase storage test coverage (#435)
* Fixing storage and adding tests

* PR pipeline only runs quick tests
2025-07-15 09:33:35 +01:00
cybermaggedon
2f7fddd206
Test suite executed from CI pipeline (#433)
* Test strategy & test cases

* Unit tests

* Integration tests
2025-07-14 14:57:44 +01:00