feat: add document pipeline, ReAct agent, and knowledge core services

Document Pipeline (Team A):
- LibrarianService: document storage with filesystem backend, metadata
  persistence, child document hierarchy, collection management
- ChunkingService: recursive character text splitter with configurable
  chunk size/overlap, FlowProcessor pattern
- KnowledgeExtractService: combined relationship + definition extraction
  using prompt service and LLM, emits RDF triples and entity contexts
- KnowledgeCoreService: knowledge core CRUD with streaming export and
  flow-based loading

ReAct Agent (Team B):
- StreamingReActParser: state machine for parsing LLM output into
  Thought/Action/ActionInput/FinalAnswer sections
- Three MVP tools: KnowledgeQuery (GraphRAG), DocumentQuery (DocRAG),
  TriplesQuery with RequestResponse clients
- AgentService FlowProcessor with ReAct loop, tool execution, and
  streaming chunk responses (thought/observation/answer)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

ts/package.json

@@ -11,12 +11,18 @@
     "config-svc": "tsx scripts/run-config.ts",
     "llm:claude": "tsx scripts/run-llm-claude.ts",
     "llm:openai": "tsx scripts/run-llm-openai.ts",
-    "test:pipeline": "tsx scripts/test-pipeline.ts"
+    "test:pipeline": "tsx scripts/test-pipeline.ts",
+    "agent": "tsx scripts/run-agent.ts",
+    "librarian": "tsx scripts/run-librarian.ts",
+    "knowledge": "tsx scripts/run-knowledge.ts"
   },
   "devDependencies": {
     "tsx": "^4.21.0",
     "turbo": "^2.5.0",
     "typescript": "^5.8.0"
   },
-  "packageManager": "pnpm@9.15.0"
+  "packageManager": "pnpm@9.15.0",
+  "workspaces": [
+    "packages/*"
+  ]
 }

ts/packages/flow/src/agent/react/index.ts

@@ -0,0 +1,19 @@
+// ReAct agent -- barrel exports
+
+export { AgentService } from "./service.js";
+export { StreamingReActParser } from "./parser.js";
+export { buildReActPrompt } from "./prompt.js";
+export {
+  createKnowledgeQueryTool,
+  createDocumentQueryTool,
+  createTriplesQueryTool,
+} from "./tools.js";
+export type {
+  AgentTool,
+  ToolArg,
+  ReActState,
+  ParsedEvent,
+  OnThought,
+  OnObservation,
+  OnAnswer,
+} from "./types.js";

ts/packages/flow/src/agent/react/parser.ts

@@ -0,0 +1,130 @@
+/**
+ * Streaming ReAct parser -- state machine that processes LLM output one chunk at a time.
+ *
+ * Detects these markers in the LLM output:
+ * - "Thought:" -> emit thought content
+ * - "Action:" -> emit action name (tool name)
+ * - "Action Input:" -> emit action input (JSON args)
+ * - "Final Answer:" -> emit final answer content
+ *
+ * Handles markers split across chunks by buffering lines.
+ */
+
+import type { ReActState } from "./types.js";
+
+const MARKERS = [
+  { prefix: "Thought:", state: "thought" as ReActState },
+  { prefix: "Action Input:", state: "action_input" as ReActState },
+  { prefix: "Action:", state: "action" as ReActState },
+  { prefix: "Final Answer:", state: "final_answer" as ReActState },
+];
+
+// Longest marker prefix for partial-match detection
+const MAX_MARKER_LEN = Math.max(...MARKERS.map((m) => m.prefix.length));
+
+export class StreamingReActParser {
+  private state: ReActState = "initial";
+  private buffer = "";
+
+  constructor(
+    private onThought: (text: string) => void,
+    private onAction: (name: string) => void,
+    private onActionInput: (input: string) => void,
+    private onFinalAnswer: (text: string) => void,
+  ) {}
+
+  /**
+   * Feed a chunk of LLM output text into the parser.
+   * Accumulates in a buffer and processes complete lines.
+   */
+  feed(text: string): void {
+    this.buffer += text;
+    this.processBuffer(false);
+  }
+
+  /**
+   * Flush any remaining buffered content at the end of output.
+   */
+  flush(): void {
+    this.processBuffer(true);
+    // Emit any remaining buffer content in the current state
+    if (this.buffer.trim().length > 0) {
+      this.emitContent(this.buffer);
+      this.buffer = "";
+    }
+  }
+
+  private processBuffer(isFinal: boolean): void {
+    // Process complete lines (terminated by newline)
+    while (true) {
+      const newlineIdx = this.buffer.indexOf("\n");
+      if (newlineIdx === -1) {
+        // No complete line yet.
+        // If not final, check for partial marker match at the end and wait.
+        if (!isFinal) {
+          // If the remaining buffer could be the start of a marker, wait for more input.
+          const trimmed = this.buffer.trimStart();
+          if (trimmed.length > 0 && trimmed.length < MAX_MARKER_LEN) {
+            const couldBeMarker = MARKERS.some((m) =>
+              m.prefix.startsWith(trimmed),
+            );
+            if (couldBeMarker) {
+              // Wait for more input before deciding
+              return;
+            }
+          }
+        }
+        break;
+      }
+
+      const line = this.buffer.slice(0, newlineIdx);
+      this.buffer = this.buffer.slice(newlineIdx + 1);
+      this.processLine(line);
+    }
+  }
+
+  private processLine(line: string): void {
+    const trimmed = line.trimStart();
+
+    // Check if this line starts a new section
+    for (const marker of MARKERS) {
+      if (trimmed.startsWith(marker.prefix)) {
+        const content = trimmed.slice(marker.prefix.length).trim();
+        this.state = marker.state;
+        this.emitContent(content);
+        return;
+      }
+    }
+
+    // Otherwise, this is continuation content for the current state
+    if (trimmed.length > 0) {
+      this.emitContent(trimmed);
+    }
+  }
+
+  private emitContent(content: string): void {
+    if (content.length === 0) return;
+
+    switch (this.state) {
+      case "thought":
+        this.onThought(content);
+        break;
+      case "action":
+        this.onAction(content);
+        break;
+      case "action_input":
+        this.onActionInput(content);
+        break;
+      case "final_answer":
+        this.onFinalAnswer(content);
+        break;
+      case "initial":
+        // Content before any marker -- treat as thought
+        this.state = "thought";
+        this.onThought(content);
+        break;
+      case "complete":
+        break;
+    }
+  }
+}

ts/packages/flow/src/agent/react/prompt.ts

@@ -0,0 +1,50 @@
+/**
+ * Build the ReAct system prompt for the agent.
+ *
+ * Formats available tools into the prompt template so the LLM knows what tools
+ * it can use and what format to follow.
+ */
+
+import type { AgentTool } from "./types.js";
+
+export function buildReActPrompt(
+  tools: AgentTool[],
+  question: string,
+): { system: string; prompt: string } {
+  const toolDescriptions = tools
+    .map((t) => {
+      const argDesc = t.args
+        .map((a) => `  - ${a.name} (${a.type}): ${a.description}`)
+        .join("\n");
+      return `${t.name}: ${t.description}\n  Arguments:\n${argDesc}`;
+    })
+    .join("\n\n");
+
+  const toolNames = tools.map((t) => t.name).join(", ");
+
+  const system = `You are a helpful AI assistant that answers questions using available tools.
+
+You have access to the following tools:
+
+${toolDescriptions}
+
+Use this exact format for your response:
+
+Thought: [your reasoning about what to do]
+Action: [tool name, one of: ${toolNames}]
+Action Input: {"argument_name": "value"}
+Observation: [tool result will be inserted here]
+... (repeat Thought/Action/Action Input/Observation as needed)
+Thought: I now have enough information to answer.
+Final Answer: [your comprehensive answer]
+
+Important:
+- Always start with a Thought.
+- Action must be one of: ${toolNames}
+- Action Input must be valid JSON.
+- After receiving an Observation, continue with another Thought.
+- When you have enough information, provide a Final Answer.
+- Do NOT make up observations. Wait for the tool result.`;
+
+  return { system, prompt: question };
+}

ts/packages/flow/src/agent/react/service.ts

@@ -0,0 +1,306 @@
+/**
+ * ReAct agent service -- a FlowProcessor that implements a streaming ReAct
+ * (Reasoning + Acting) agent with tool execution.
+ *
+ * The agent:
+ * 1. Receives an AgentRequest (a user question)
+ * 2. Builds a ReAct prompt with available tools
+ * 3. Iteratively calls the LLM, parses Thought/Action/Action Input/Final Answer
+ * 4. Executes tools and feeds observations back to the LLM
+ * 5. Sends streaming AgentResponse chunks (thought, observation, answer, error)
+ *
+ * Python reference: trustgraph-flow/trustgraph/agent/react/service.py
+ */
+
+import {
+  FlowProcessor,
+  ConsumerSpec,
+  ProducerSpec,
+  RequestResponseSpec,
+  type ProcessorConfig,
+  type FlowContext,
+  type AgentRequest,
+  type AgentResponse,
+  type TextCompletionRequest,
+  type TextCompletionResponse,
+  type GraphRagRequest,
+  type GraphRagResponse,
+  type DocumentRagRequest,
+  type DocumentRagResponse,
+  type TriplesQueryRequest,
+  type TriplesQueryResponse,
+} from "@trustgraph/base";
+
+import {
+  createKnowledgeQueryTool,
+  createDocumentQueryTool,
+  createTriplesQueryTool,
+} from "./tools.js";
+import { buildReActPrompt } from "./prompt.js";
+import type { AgentTool } from "./types.js";
+
+const MAX_ITERATIONS = 10;
+
+export class AgentService extends FlowProcessor {
+  constructor(config: ProcessorConfig) {
+    super(config);
+
+    // Consumer: agent requests
+    this.registerSpecification(
+      new ConsumerSpec<AgentRequest>("request", this.onRequest.bind(this)),
+    );
+
+    // Producer: agent responses (streaming chunks)
+    this.registerSpecification(new ProducerSpec<AgentResponse>("response"));
+
+    // Request-response clients for tool execution
+    this.registerSpecification(
+      new RequestResponseSpec<TextCompletionRequest, TextCompletionResponse>(
+        "llm",
+        "text-completion-request",
+        "text-completion-response",
+      ),
+    );
+    this.registerSpecification(
+      new RequestResponseSpec<GraphRagRequest, GraphRagResponse>(
+        "graph-rag",
+        "graph-rag-request",
+        "graph-rag-response",
+      ),
+    );
+    this.registerSpecification(
+      new RequestResponseSpec<DocumentRagRequest, DocumentRagResponse>(
+        "doc-rag",
+        "document-rag-request",
+        "document-rag-response",
+      ),
+    );
+    this.registerSpecification(
+      new RequestResponseSpec<TriplesQueryRequest, TriplesQueryResponse>(
+        "triples",
+        "triples-request",
+        "triples-response",
+      ),
+    );
+
+    console.log("[AgentService] Service initialized");
+  }
+
+  private async onRequest(
+    msg: AgentRequest,
+    properties: Record<string, string>,
+    flowCtx: FlowContext,
+  ): Promise<void> {
+    const requestId = properties.id;
+    if (!requestId) return;
+
+    const responseProducer = flowCtx.flow.producer<AgentResponse>("response");
+
+    try {
+      // Build tools from flow requestors
+      const tools: AgentTool[] = [
+        createKnowledgeQueryTool(
+          flowCtx.flow.requestor<GraphRagRequest, GraphRagResponse>("graph-rag"),
+          msg.collection,
+        ),
+        createDocumentQueryTool(
+          flowCtx.flow.requestor<DocumentRagRequest, DocumentRagResponse>("doc-rag"),
+          msg.collection,
+        ),
+        createTriplesQueryTool(
+          flowCtx.flow.requestor<TriplesQueryRequest, TriplesQueryResponse>("triples"),
+          msg.collection,
+        ),
+      ];
+
+      // Build the ReAct prompt
+      const { system, prompt: initialPrompt } = buildReActPrompt(
+        tools,
+        msg.question,
+      );
+
+      const llmClient = flowCtx.flow.requestor<
+        TextCompletionRequest,
+        TextCompletionResponse
+      >("llm");
+
+      // Conversation accumulates the full exchange for multi-turn reasoning
+      let conversation = initialPrompt;
+
+      for (let iteration = 0; iteration < MAX_ITERATIONS; iteration++) {
+        console.log(
+          `[AgentService] Iteration ${iteration + 1}/${MAX_ITERATIONS} for request ${requestId}`,
+        );
+
+        // Call LLM (non-streaming for MVP)
+        const llmResponse = await llmClient.request({
+          system,
+          prompt: conversation,
+        });
+
+        if (llmResponse.error) {
+          await responseProducer.send(requestId, {
+            chunk_type: "error",
+            content: `LLM error: ${llmResponse.error.message}`,
+            end_of_dialog: true,
+          });
+          return;
+        }
+
+        const text = llmResponse.response;
+
+        // Parse the LLM response with simple line-based parsing
+        const parsed = parseReActResponse(text);
+
+        // Send thought chunk
+        if (parsed.thought) {
+          await responseProducer.send(requestId, {
+            chunk_type: "thought",
+            content: parsed.thought,
+            end_of_message: true,
+          });
+        }
+
+        // If we got a final answer, send it and return
+        if (parsed.finalAnswer) {
+          await responseProducer.send(requestId, {
+            chunk_type: "answer",
+            content: parsed.finalAnswer,
+            end_of_message: true,
+            end_of_dialog: true,
+          });
+          return;
+        }
+
+        // Execute tool if action was specified
+        if (parsed.action && parsed.actionInput) {
+          const tool = tools.find((t) => t.name === parsed.action);
+          let observation: string;
+
+          if (tool) {
+            try {
+              observation = await tool.execute(parsed.actionInput);
+            } catch (err) {
+              observation = `Error executing tool: ${err instanceof Error ? err.message : String(err)}`;
+            }
+          } else {
+            observation = `Unknown tool: ${parsed.action}. Available tools: ${tools.map((t) => t.name).join(", ")}`;
+          }
+
+          // Send observation chunk
+          await responseProducer.send(requestId, {
+            chunk_type: "observation",
+            content: observation,
+            end_of_message: true,
+          });
+
+          // Append the full exchange to conversation for the next iteration
+          conversation += `\n${text}\nObservation: ${observation}\n`;
+        } else if (!parsed.finalAnswer) {
+          // LLM didn't produce a valid action or final answer -- nudge it
+          conversation += `\n${text}\nObservation: You must either use a tool (Action + Action Input) or provide a Final Answer.\n`;
+        }
+      }
+
+      // Max iterations reached without a final answer
+      await responseProducer.send(requestId, {
+        chunk_type: "error",
+        content:
+          "Maximum reasoning iterations reached without a final answer. " +
+          "The agent was unable to complete the task within the allowed steps.",
+        end_of_message: true,
+        end_of_dialog: true,
+      });
+    } catch (err) {
+      console.error(`[AgentService] Error processing request ${requestId}:`, err);
+
+      await responseProducer.send(requestId, {
+        chunk_type: "error",
+        content: `Agent error: ${err instanceof Error ? err.message : String(err)}`,
+        end_of_message: true,
+        end_of_dialog: true,
+      });
+    }
+  }
+}
+
+/**
+ * Simple line-based parser for ReAct LLM output.
+ *
+ * Extracts Thought, Action, Action Input, and Final Answer sections.
+ * For the MVP this avoids the complexity of the streaming parser --
+ * we parse the complete response at once.
+ */
+function parseReActResponse(text: string): {
+  thought: string;
+  action: string;
+  actionInput: string;
+  finalAnswer: string;
+} {
+  let thought = "";
+  let action = "";
+  let actionInput = "";
+  let finalAnswer = "";
+
+  const lines = text.split("\n");
+  let currentSection: "thought" | "action" | "action_input" | null = null;
+
+  for (let i = 0; i < lines.length; i++) {
+    const line = lines[i];
+    const trimmed = line.trimStart();
+
+    if (trimmed.startsWith("Final Answer:")) {
+      // Everything from "Final Answer:" to end of text is the answer
+      const firstLine = trimmed.slice("Final Answer:".length).trim();
+      const remainingLines = lines.slice(i + 1).join("\n").trim();
+      finalAnswer = firstLine + (remainingLines ? "\n" + remainingLines : "");
+      break;
+    } else if (trimmed.startsWith("Thought:")) {
+      currentSection = "thought";
+      const content = trimmed.slice("Thought:".length).trim();
+      if (content) {
+        thought += (thought ? "\n" : "") + content;
+      }
+    } else if (trimmed.startsWith("Action Input:")) {
+      currentSection = "action_input";
+      const content = trimmed.slice("Action Input:".length).trim();
+      if (content) {
+        actionInput += content;
+      }
+    } else if (trimmed.startsWith("Action:")) {
+      currentSection = "action";
+      const content = trimmed.slice("Action:".length).trim();
+      if (content) {
+        action = content;
+      }
+    } else if (trimmed.startsWith("Observation:")) {
+      // Stop processing -- observations are injected by us, not the LLM
+      currentSection = null;
+    } else if (trimmed.length > 0 && currentSection) {
+      // Continuation line for current section
+      switch (currentSection) {
+        case "thought":
+          thought += "\n" + trimmed;
+          break;
+        case "action":
+          // Action should be a single line (tool name), but handle multi-line
+          action += " " + trimmed;
+          break;
+        case "action_input":
+          actionInput += "\n" + trimmed;
+          break;
+      }
+    }
+  }
+
+  return {
+    thought: thought.trim(),
+    action: action.trim(),
+    actionInput: actionInput.trim(),
+    finalAnswer: finalAnswer.trim(),
+  };
+}
+
+export async function run(): Promise<void> {
+  await AgentService.launch("agent");
+}

ts/packages/flow/src/agent/react/tools.ts

@@ -0,0 +1,199 @@
+/**
+ * MVP tools for the ReAct agent.
+ *
+ * Each tool wraps a RequestResponse client from the flow, providing the agent
+ * with access to existing TrustGraph retrieval services.
+ */
+
+import type {
+  RequestResponse,
+  GraphRagRequest,
+  GraphRagResponse,
+  DocumentRagRequest,
+  DocumentRagResponse,
+  TriplesQueryRequest,
+  TriplesQueryResponse,
+  Term,
+} from "@trustgraph/base";
+
+import type { AgentTool } from "./types.js";
+
+/**
+ * Format a Term to a human-readable string.
+ */
+function termToString(term: Term): string {
+  switch (term.type) {
+    case "IRI":
+      return term.iri;
+    case "LITERAL":
+      return term.value;
+    case "BLANK":
+      return `_:${term.id}`;
+    case "TRIPLE":
+      return `(${termToString(term.triple.s)} ${termToString(term.triple.p)} ${termToString(term.triple.o)})`;
+  }
+}
+
+/**
+ * Parse tool input -- accepts either raw JSON or a plain string question.
+ */
+function parseQuestion(input: string): string {
+  try {
+    const parsed = JSON.parse(input) as Record<string, unknown>;
+    if (typeof parsed === "object" && parsed !== null && "question" in parsed) {
+      return String(parsed.question);
+    }
+    // If it's a string JSON value, use it directly
+    if (typeof parsed === "string") {
+      return parsed;
+    }
+  } catch {
+    // Not valid JSON -- treat as plain text
+  }
+  return input;
+}
+
+/**
+ * Query the knowledge graph for information about entities and their relationships.
+ */
+export function createKnowledgeQueryTool(
+  client: RequestResponse<GraphRagRequest, GraphRagResponse>,
+  collection?: string,
+): AgentTool {
+  return {
+    name: "KnowledgeQuery",
+    description:
+      "Query the knowledge graph for information about entities and their relationships.",
+    args: [
+      {
+        name: "question",
+        type: "string",
+        description: "The question to ask the knowledge graph",
+      },
+    ],
+    async execute(input: string): Promise<string> {
+      const question = parseQuestion(input);
+      const res = await client.request({ query: question, collection });
+      if (res.error) return `Error: ${res.error.message}`;
+      return res.response;
+    },
+  };
+}
+
+/**
+ * Search documents for relevant information.
+ */
+export function createDocumentQueryTool(
+  client: RequestResponse<DocumentRagRequest, DocumentRagResponse>,
+  collection?: string,
+): AgentTool {
+  return {
+    name: "DocumentQuery",
+    description:
+      "Search the document library for relevant information using semantic search.",
+    args: [
+      {
+        name: "question",
+        type: "string",
+        description: "The question to search documents for",
+      },
+    ],
+    async execute(input: string): Promise<string> {
+      const question = parseQuestion(input);
+      const res = await client.request({ query: question, collection });
+      if (res.error) return `Error: ${res.error.message}`;
+      return res.response;
+    },
+  };
+}
+
+/**
+ * Parse triples query input. Accepts JSON with optional s, p, o fields.
+ */
+function parseTriplesInput(input: string): {
+  s?: Term;
+  p?: Term;
+  o?: Term;
+  limit?: number;
+} {
+  try {
+    const parsed = JSON.parse(input) as Record<string, unknown>;
+
+    const toTerm = (val: unknown): Term | undefined => {
+      if (typeof val === "string") {
+        return { type: "LITERAL", value: val };
+      }
+      if (typeof val === "object" && val !== null && "type" in val) {
+        return val as Term;
+      }
+      return undefined;
+    };
+
+    return {
+      s: toTerm(parsed.subject ?? parsed.s),
+      p: toTerm(parsed.predicate ?? parsed.p),
+      o: toTerm(parsed.object ?? parsed.o),
+      limit:
+        typeof parsed.limit === "number" ? parsed.limit : undefined,
+    };
+  } catch {
+    // If not valid JSON, treat as a subject search
+    return {
+      s: { type: "LITERAL", value: input },
+    };
+  }
+}
+
+/**
+ * Query for specific triples (subject-predicate-object relationships) in the knowledge graph.
+ */
+export function createTriplesQueryTool(
+  client: RequestResponse<TriplesQueryRequest, TriplesQueryResponse>,
+  collection?: string,
+): AgentTool {
+  return {
+    name: "TriplesQuery",
+    description:
+      "Query for specific triples (subject-predicate-object relationships) in the knowledge graph. " +
+      "Provide subject, predicate, and/or object to filter results.",
+    args: [
+      {
+        name: "subject",
+        type: "string",
+        description: "The subject entity to search for (optional)",
+      },
+      {
+        name: "predicate",
+        type: "string",
+        description: "The predicate/relationship to search for (optional)",
+      },
+      {
+        name: "object",
+        type: "string",
+        description: "The object entity to search for (optional)",
+      },
+    ],
+    async execute(input: string): Promise<string> {
+      const { s, p, o, limit } = parseTriplesInput(input);
+      const res = await client.request({
+        s,
+        p,
+        o,
+        collection,
+        limit: limit ?? 20,
+      });
+
+      if (res.error) return `Error: ${res.error.message}`;
+
+      if (!res.triples || res.triples.length === 0) {
+        return "No triples found matching the query.";
+      }
+
+      const lines = res.triples.map(
+        (t) =>
+          `(${termToString(t.s)}) -[${termToString(t.p)}]-> (${termToString(t.o)})`,
+      );
+      return lines.join("\n");
+    },
+  };
+}

ts/packages/flow/src/agent/react/types.ts

@@ -0,0 +1,33 @@
+/**
+ * Types for the ReAct agent service.
+ */
+
+export interface ToolArg {
+  name: string;
+  type: string;
+  description: string;
+}
+
+export interface AgentTool {
+  name: string;
+  description: string;
+  args: ToolArg[];
+  execute: (input: string) => Promise<string>;
+}
+
+export type ReActState =
+  | "initial"
+  | "thought"
+  | "action"
+  | "action_input"
+  | "final_answer"
+  | "complete";
+
+export interface ParsedEvent {
+  type: "thought" | "action" | "action_input" | "final_answer";
+  content: string;
+}
+
+export type OnThought = (text: string, isFinal: boolean) => Promise<void>;
+export type OnObservation = (text: string, isFinal: boolean) => Promise<void>;
+export type OnAnswer = (text: string) => Promise<void>;

ts/packages/flow/src/chunking/recursive-splitter.ts

@@ -0,0 +1,106 @@
+/**
+ * Recursive character text splitter.
+ *
+ * Matches the behaviour of LangChain's RecursiveCharacterTextSplitter:
+ * 1. Try separators in order: "\n\n", "\n", " ", ""
+ * 2. Split on the best separator that exists in the text
+ * 3. Merge small pieces until they approach chunkSize
+ * 4. Recursively split pieces that exceed chunkSize with the next separator
+ * 5. Apply overlap: include trailing chunkOverlap chars from the previous chunk
+ *
+ * Python reference: trustgraph-flow/trustgraph/chunking/recursive_splitter/service.py
+ */
+
+const DEFAULT_SEPARATORS = ["\n\n", "\n", " ", ""];
+
+export function recursiveSplit(
+  text: string,
+  chunkSize: number,
+  chunkOverlap: number,
+): string[] {
+  return splitRecursive(text, chunkSize, chunkOverlap, DEFAULT_SEPARATORS);
+}
+
+function splitRecursive(
+  text: string,
+  chunkSize: number,
+  chunkOverlap: number,
+  separators: string[],
+): string[] {
+  if (text.length <= chunkSize) {
+    return text.trim().length > 0 ? [text] : [];
+  }
+
+  // Find the best separator that exists in the text
+  let separator = "";
+  let remainingSeparators = separators;
+
+  for (let i = 0; i < separators.length; i++) {
+    const sep = separators[i];
+    if (sep === "" || text.includes(sep)) {
+      separator = sep;
+      remainingSeparators = separators.slice(i + 1);
+      break;
+    }
+  }
+
+  // Split on the selected separator
+  const pieces = separator === "" ? [...text] : text.split(separator);
+
+  // Merge small pieces into chunks
+  const merged = mergePieces(pieces, separator, chunkSize);
+
+  // Recursively split oversized chunks with the next separator
+  const results: string[] = [];
+  for (const chunk of merged) {
+    if (chunk.length > chunkSize && remainingSeparators.length > 0) {
+      const subChunks = splitRecursive(chunk, chunkSize, chunkOverlap, remainingSeparators);
+      results.push(...subChunks);
+    } else if (chunk.trim().length > 0) {
+      results.push(chunk);
+    }
+  }
+
+  // Apply overlap
+  return applyOverlap(results, chunkOverlap);
+}
+
+function mergePieces(
+  pieces: string[],
+  separator: string,
+  chunkSize: number,
+): string[] {
+  const chunks: string[] = [];
+  let current = "";
+
+  for (const piece of pieces) {
+    const candidate = current.length > 0 ? current + separator + piece : piece;
+
+    if (candidate.length > chunkSize && current.length > 0) {
+      chunks.push(current);
+      current = piece;
+    } else {
+      current = candidate;
+    }
+  }
+
+  if (current.length > 0) {
+    chunks.push(current);
+  }
+
+  return chunks;
+}
+
+function applyOverlap(chunks: string[], overlapSize: number): string[] {
+  if (overlapSize <= 0 || chunks.length <= 1) return chunks;
+
+  const result: string[] = [chunks[0]];
+
+  for (let i = 1; i < chunks.length; i++) {
+    const prev = chunks[i - 1];
+    const overlapText = prev.slice(Math.max(0, prev.length - overlapSize));
+    result.push(overlapText + chunks[i]);
+  }
+
+  return result;
+}

ts/packages/flow/src/chunking/service.ts

@@ -0,0 +1,94 @@
+/**
+ * Chunking service — splits text documents into chunks for downstream processing.
+ *
+ * A FlowProcessor that:
+ * 1. Consumes TextDocument messages
+ * 2. Splits text using recursive character text splitting
+ * 3. Emits Chunk messages for each resulting chunk
+ *
+ * Python reference: trustgraph-flow/trustgraph/chunking/recursive_splitter/service.py
+ */
+
+import {
+  FlowProcessor,
+  ConsumerSpec,
+  ProducerSpec,
+  ParameterSpec,
+  type ProcessorConfig,
+  type FlowContext,
+  type TextDocument,
+  type Chunk,
+  type Triples,
+} from "@trustgraph/base";
+import { recursiveSplit } from "./recursive-splitter.js";
+
+const DEFAULT_CHUNK_SIZE = 2000;
+const DEFAULT_CHUNK_OVERLAP = 100;
+
+export class ChunkingService extends FlowProcessor {
+  constructor(config: ProcessorConfig) {
+    super(config);
+
+    this.registerSpecification(
+      new ConsumerSpec<TextDocument>("input", this.onMessage.bind(this)),
+    );
+    this.registerSpecification(new ProducerSpec<Chunk>("output"));
+    this.registerSpecification(new ProducerSpec<Triples>("triples"));
+    this.registerSpecification(new ParameterSpec("chunk-size"));
+    this.registerSpecification(new ParameterSpec("chunk-overlap"));
+
+    console.log("[ChunkingService] Service initialized");
+  }
+
+  private async onMessage(
+    msg: TextDocument,
+    properties: Record<string, string>,
+    flowCtx: FlowContext,
+  ): Promise<void> {
+    const requestId = properties.id;
+    if (!requestId) return;
+
+    let chunkSize: number;
+    let chunkOverlap: number;
+
+    try {
+      chunkSize = flowCtx.flow.parameter<number>("chunk-size");
+    } catch {
+      chunkSize = DEFAULT_CHUNK_SIZE;
+    }
+
+    try {
+      chunkOverlap = flowCtx.flow.parameter<number>("chunk-overlap");
+    } catch {
+      chunkOverlap = DEFAULT_CHUNK_OVERLAP;
+    }
+
+    const text = msg.text;
+    if (!text || text.trim().length === 0) {
+      console.warn(`[ChunkingService] Empty text received for document ${msg.documentId}`);
+      return;
+    }
+
+    const chunks = recursiveSplit(text, chunkSize, chunkOverlap);
+
+    console.log(
+      `[ChunkingService] Split document ${msg.documentId} into ${chunks.length} chunks (size=${chunkSize}, overlap=${chunkOverlap})`,
+    );
+
+    const outputProducer = flowCtx.flow.producer<Chunk>("output");
+
+    for (const chunkText of chunks) {
+      const chunk: Chunk = {
+        metadata: msg.metadata,
+        chunk: chunkText,
+        documentId: msg.documentId,
+      };
+
+      await outputProducer.send(requestId, chunk);
+    }
+  }
+}
+
+export async function run(): Promise<void> {
+  await ChunkingService.launch("chunking");
+}

ts/packages/flow/src/cores/service.ts

@@ -0,0 +1,293 @@
+/**
+ * Knowledge core service — manages stored knowledge graph cores (triples + embeddings).
+ *
+ * An AsyncProcessor (NOT FlowProcessor) that:
+ * 1. Listens on knowledge-request topic
+ * 2. Handles CRUD operations for knowledge graph cores
+ * 3. Each core stores triples and graph embeddings keyed by user:id
+ * 4. Persists state to JSON
+ *
+ * Python reference: trustgraph-flow/trustgraph/knowledge/service/service.py
+ */
+
+import { readFile, writeFile, mkdir } from "node:fs/promises";
+import { dirname, join } from "node:path";
+import {
+  AsyncProcessor,
+  type ProcessorConfig,
+  topics,
+  type KnowledgeRequest,
+  type KnowledgeResponse,
+  type Triple,
+  type Term,
+} from "@trustgraph/base";
+import type { BackendProducer, BackendConsumer, Message } from "@trustgraph/base";
+
+export interface KnowledgeCoreServiceConfig extends ProcessorConfig {
+  dataDir?: string;
+}
+
+interface KnowledgeCore {
+  triples: Triple[];
+  graphEmbeddings: { entity: Term; vectors: number[][] }[];
+}
+
+export class KnowledgeCoreService extends AsyncProcessor {
+  /** Keyed by `${user}:${id}` */
+  private cores = new Map<string, KnowledgeCore>();
+  private readonly persistPath: string;
+
+  private consumer: BackendConsumer<KnowledgeRequest> | null = null;
+  private responseProducer: BackendProducer<KnowledgeResponse> | null = null;
+
+  constructor(config: KnowledgeCoreServiceConfig) {
+    super(config);
+    const dataDir = config.dataDir ?? process.env.KNOWLEDGE_DATA_DIR ?? "./data/knowledge";
+    this.persistPath = join(dataDir, "knowledge-state.json");
+  }
+
+  private coreKey(user: string, id: string): string {
+    return `${user}:${id}`;
+  }
+
+  protected override async run(): Promise<void> {
+    // Load persisted state
+    await this.loadFromDisk();
+
+    // Create producer
+    this.responseProducer = await this.pubsub.createProducer<KnowledgeResponse>({
+      topic: topics.knowledgeResponse,
+    });
+
+    // Create consumer
+    this.consumer = await this.pubsub.createConsumer<KnowledgeRequest>({
+      topic: topics.knowledgeRequest,
+      subscription: `${this.config.id}-knowledge-request`,
+    });
+
+    console.log(`[KnowledgeCoreService] Listening on ${topics.knowledgeRequest}`);
+
+    // Main consume loop
+    while (this.running) {
+      try {
+        const msg = await this.consumer.receive(2000);
+        if (!msg) continue;
+
+        await this.handleMessage(msg);
+        await this.consumer.acknowledge(msg);
+      } catch (err) {
+        if (!this.running) break;
+        console.error("[KnowledgeCoreService] Error in consume loop:", err);
+        await sleep(1000);
+      }
+    }
+  }
+
+  private async handleMessage(msg: Message<KnowledgeRequest>): Promise<void> {
+    const request = msg.value();
+    const props = msg.properties();
+    const requestId = props.id;
+
+    if (!requestId) {
+      console.warn("[KnowledgeCoreService] Received request without id, ignoring");
+      return;
+    }
+
+    try {
+      await this.handleOperation(request, requestId);
+    } catch (err) {
+      const message = err instanceof Error ? err.message : String(err);
+      await this.responseProducer!.send(
+        { error: { type: "knowledge-error", message } },
+        { id: requestId },
+      );
+    }
+  }
+
+  private async handleOperation(request: KnowledgeRequest, requestId: string): Promise<void> {
+    switch (request.operation) {
+      case "list-kg-cores":
+        return this.listKgCores(request, requestId);
+      case "get-kg-core":
+        return this.getKgCore(request, requestId);
+      case "delete-kg-core":
+        return this.deleteKgCore(request, requestId);
+      case "put-kg-core":
+        return this.putKgCore(request, requestId);
+      case "load-kg-core":
+        return this.loadKgCore(request, requestId);
+      default:
+        throw new Error(`Unknown knowledge operation: ${request.operation as string}`);
+    }
+  }
+
+  private async listKgCores(request: KnowledgeRequest, requestId: string): Promise<void> {
+    const user = request.user ?? "";
+    const prefix = user ? `${user}:` : "";
+
+    const ids: string[] = [];
+    for (const key of this.cores.keys()) {
+      if (!prefix || key.startsWith(prefix)) {
+        // Extract the ID portion after the user prefix
+        const id = key.slice(prefix.length);
+        ids.push(id);
+      }
+    }
+
+    await this.responseProducer!.send({ ids }, { id: requestId });
+  }
+
+  private async getKgCore(request: KnowledgeRequest, requestId: string): Promise<void> {
+    const user = request.user ?? "";
+    const coreId = request.id ?? "";
+    const key = this.coreKey(user, coreId);
+
+    const core = this.cores.get(key);
+    if (!core) {
+      throw new Error(`Knowledge core not found: ${key}`);
+    }
+
+    // Send triples and embeddings in batches
+    const BATCH_SIZE = 100;
+
+    // Send triples in batches
+    for (let i = 0; i < core.triples.length; i += BATCH_SIZE) {
+      const batch = core.triples.slice(i, i + BATCH_SIZE);
+      const isLast = i + BATCH_SIZE >= core.triples.length && core.graphEmbeddings.length === 0;
+
+      await this.responseProducer!.send(
+        { triples: batch, eos: isLast },
+        { id: requestId },
+      );
+    }
+
+    // Send graph embeddings in batches
+    for (let i = 0; i < core.graphEmbeddings.length; i += BATCH_SIZE) {
+      const batch = core.graphEmbeddings.slice(i, i + BATCH_SIZE);
+      const isLast = i + BATCH_SIZE >= core.graphEmbeddings.length;
+
+      await this.responseProducer!.send(
+        { graphEmbeddings: batch, eos: isLast },
+        { id: requestId },
+      );
+    }
+
+    // If core was empty, send a final eos
+    if (core.triples.length === 0 && core.graphEmbeddings.length === 0) {
+      await this.responseProducer!.send({ eos: true }, { id: requestId });
+    }
+  }
+
+  private async deleteKgCore(request: KnowledgeRequest, requestId: string): Promise<void> {
+    const user = request.user ?? "";
+    const coreId = request.id ?? "";
+    const key = this.coreKey(user, coreId);
+
+    this.cores.delete(key);
+    await this.persist();
+
+    console.log(`[KnowledgeCoreService] Deleted core: ${key}`);
+    await this.responseProducer!.send({}, { id: requestId });
+  }
+
+  private async putKgCore(request: KnowledgeRequest, requestId: string): Promise<void> {
+    const user = request.user ?? "";
+    const coreId = request.id ?? "";
+    const key = this.coreKey(user, coreId);
+
+    let core = this.cores.get(key);
+    if (!core) {
+      core = { triples: [], graphEmbeddings: [] };
+      this.cores.set(key, core);
+    }
+
+    // Append triples if provided
+    if (request.triples && request.triples.length > 0) {
+      core.triples.push(...request.triples);
+    }
+
+    // Append graph embeddings if provided
+    if (request.graphEmbeddings && request.graphEmbeddings.length > 0) {
+      core.graphEmbeddings.push(...request.graphEmbeddings);
+    }
+
+    await this.persist();
+
+    console.log(
+      `[KnowledgeCoreService] Updated core ${key}: triples=${core.triples.length}, embeddings=${core.graphEmbeddings.length}`,
+    );
+    await this.responseProducer!.send({}, { id: requestId });
+  }
+
+  private async loadKgCore(request: KnowledgeRequest, requestId: string): Promise<void> {
+    const user = request.user ?? "";
+    const coreId = request.id ?? "";
+    const key = this.coreKey(user, coreId);
+
+    const core = this.cores.get(key);
+    if (!core) {
+      throw new Error(`Knowledge core not found: ${key}`);
+    }
+
+    // MVP: just acknowledge. Full implementation would publish triples
+    // to flow storage topics via the flow config.
+    console.log(
+      `[KnowledgeCoreService] Load requested for core ${key} (triples=${core.triples.length}, embeddings=${core.graphEmbeddings.length}) — returning success`,
+    );
+    await this.responseProducer!.send({}, { id: requestId });
+  }
+
+  // ---------- Persistence ----------
+
+  private async persist(): Promise<void> {
+    try {
+      // Serialize Map to object
+      const data: Record<string, KnowledgeCore> = {};
+      for (const [key, core] of this.cores) {
+        data[key] = core;
+      }
+
+      const json = JSON.stringify(data, null, 2);
+      await mkdir(dirname(this.persistPath), { recursive: true });
+      await writeFile(this.persistPath, json, "utf-8");
+    } catch (err) {
+      console.error("[KnowledgeCoreService] Failed to persist state:", err);
+    }
+  }
+
+  private async loadFromDisk(): Promise<void> {
+    try {
+      const raw = await readFile(this.persistPath, "utf-8");
+      const parsed = JSON.parse(raw) as Record<string, KnowledgeCore>;
+
+      this.cores.clear();
+      for (const [key, core] of Object.entries(parsed)) {
+        this.cores.set(key, core);
+      }
+
+      console.log(`[KnowledgeCoreService] Loaded persisted state (cores=${this.cores.size})`);
+    } catch {
+      console.log("[KnowledgeCoreService] No persisted state found, starting fresh");
+    }
+  }
+
+  override async stop(): Promise<void> {
+    if (this.consumer) {
+      await this.consumer.close();
+      this.consumer = null;
+    }
+    if (this.responseProducer) {
+      await this.responseProducer.close();
+      this.responseProducer = null;
+    }
+    await super.stop();
+  }
+}
+
+function sleep(ms: number): Promise<void> {
+  return new Promise((resolve) => setTimeout(resolve, ms));
+}
+
+export async function run(): Promise<void> {
+  await KnowledgeCoreService.launch("knowledge-svc");
+}

ts/packages/flow/src/extract/knowledge-extract.ts

@@ -0,0 +1,269 @@
+/**
+ * Knowledge extraction service — extracts relationships and definitions from text chunks.
+ *
+ * A FlowProcessor that:
+ * 1. Consumes Chunk messages
+ * 2. Uses prompt service + LLM to extract relationships and definitions
+ * 3. Converts extractions into RDF triples and entity contexts
+ * 4. Emits Triples and EntityContexts messages
+ *
+ * Python reference: trustgraph-flow/trustgraph/extract/knowledge/service.py
+ */
+
+import {
+  FlowProcessor,
+  ConsumerSpec,
+  ProducerSpec,
+  RequestResponseSpec,
+  type ProcessorConfig,
+  type FlowContext,
+  type Chunk,
+  type Triples,
+  type EntityContexts,
+  type EntityContext,
+  type PromptRequest,
+  type PromptResponse,
+  type TextCompletionRequest,
+  type TextCompletionResponse,
+  type Triple,
+  type Term,
+} from "@trustgraph/base";
+
+// Well-known RDF/SKOS IRIs
+const RDFS_LABEL = "http://www.w3.org/2000/01/rdf-schema#label";
+const SKOS_DEFINITION = "http://www.w3.org/2004/02/skos/core#definition";
+
+interface ExtractedRelationship {
+  subject: string;
+  predicate: string;
+  object: string;
+}
+
+interface ExtractedDefinition {
+  entity: string;
+  definition: string;
+}
+
+export class KnowledgeExtractService extends FlowProcessor {
+  constructor(config: ProcessorConfig) {
+    super(config);
+
+    this.registerSpecification(
+      new ConsumerSpec<Chunk>("input", this.onMessage.bind(this)),
+    );
+    this.registerSpecification(new ProducerSpec<Triples>("triples"));
+    this.registerSpecification(new ProducerSpec<EntityContexts>("entity-contexts"));
+
+    this.registerSpecification(
+      new RequestResponseSpec<PromptRequest, PromptResponse>(
+        "prompt-client",
+        "prompt-request",
+        "prompt-response",
+      ),
+    );
+    this.registerSpecification(
+      new RequestResponseSpec<TextCompletionRequest, TextCompletionResponse>(
+        "llm-client",
+        "text-completion-request",
+        "text-completion-response",
+      ),
+    );
+
+    console.log("[KnowledgeExtract] Service initialized");
+  }
+
+  private async onMessage(
+    msg: Chunk,
+    properties: Record<string, string>,
+    flowCtx: FlowContext,
+  ): Promise<void> {
+    const requestId = properties.id;
+    if (!requestId) return;
+
+    const text = msg.chunk;
+    if (!text || text.trim().length === 0) return;
+
+    const promptClient = flowCtx.flow.requestor<PromptRequest, PromptResponse>("prompt-client");
+    const llmClient = flowCtx.flow.requestor<TextCompletionRequest, TextCompletionResponse>("llm-client");
+    const triplesProducer = flowCtx.flow.producer<Triples>("triples");
+    const entityContextsProducer = flowCtx.flow.producer<EntityContexts>("entity-contexts");
+
+    const allTriples: Triple[] = [];
+    const allEntityContexts: EntityContext[] = [];
+
+    // --- Extract relationships ---
+    try {
+      const relPrompt = await promptClient.request({
+        name: "extract-relationships",
+        variables: { text },
+      });
+
+      if (!relPrompt.error) {
+        const relCompletion = await llmClient.request({
+          system: relPrompt.system,
+          prompt: relPrompt.prompt,
+        });
+
+        if (!relCompletion.error && relCompletion.response) {
+          const relationships = parseJsonResponse<ExtractedRelationship[]>(relCompletion.response);
+
+          if (relationships) {
+            for (const rel of relationships) {
+              if (!rel.subject || !rel.predicate || !rel.object) continue;
+
+              const subjectIri = toEntityIri(rel.subject);
+              const predicateIri = toEntityIri(rel.predicate);
+              const objectIri = toEntityIri(rel.object);
+
+              // Main relationship triple
+              allTriples.push({ s: subjectIri, p: predicateIri, o: objectIri });
+
+              // rdfs:label triples for each entity
+              allTriples.push({
+                s: subjectIri,
+                p: iriTerm(RDFS_LABEL),
+                o: literalTerm(rel.subject),
+              });
+              allTriples.push({
+                s: predicateIri,
+                p: iriTerm(RDFS_LABEL),
+                o: literalTerm(rel.predicate),
+              });
+              allTriples.push({
+                s: objectIri,
+                p: iriTerm(RDFS_LABEL),
+                o: literalTerm(rel.object),
+              });
+
+              // Entity contexts for subject and object
+              allEntityContexts.push({
+                entity: subjectIri,
+                context: text,
+                chunkId: msg.documentId,
+              });
+              allEntityContexts.push({
+                entity: objectIri,
+                context: text,
+                chunkId: msg.documentId,
+              });
+            }
+
+            console.log(`[KnowledgeExtract] Extracted ${relationships.length} relationships`);
+          }
+        }
+      }
+    } catch (err) {
+      console.error("[KnowledgeExtract] Relationship extraction failed:", err);
+    }
+
+    // --- Extract definitions ---
+    try {
+      const defPrompt = await promptClient.request({
+        name: "extract-definitions",
+        variables: { text },
+      });
+
+      if (!defPrompt.error) {
+        const defCompletion = await llmClient.request({
+          system: defPrompt.system,
+          prompt: defPrompt.prompt,
+        });
+
+        if (!defCompletion.error && defCompletion.response) {
+          const definitions = parseJsonResponse<ExtractedDefinition[]>(defCompletion.response);
+
+          if (definitions) {
+            for (const def of definitions) {
+              if (!def.entity || !def.definition) continue;
+
+              const entityIri = toEntityIri(def.entity);
+
+              // Definition triple
+              allTriples.push({
+                s: entityIri,
+                p: iriTerm(SKOS_DEFINITION),
+                o: literalTerm(def.definition),
+              });
+
+              // Label triple
+              allTriples.push({
+                s: entityIri,
+                p: iriTerm(RDFS_LABEL),
+                o: literalTerm(def.entity),
+              });
+
+              // Entity context
+              allEntityContexts.push({
+                entity: entityIri,
+                context: text,
+                chunkId: msg.documentId,
+              });
+            }
+
+            console.log(`[KnowledgeExtract] Extracted ${definitions.length} definitions`);
+          }
+        }
+      }
+    } catch (err) {
+      console.error("[KnowledgeExtract] Definition extraction failed:", err);
+    }
+
+    // --- Emit results ---
+    if (allTriples.length > 0) {
+      await triplesProducer.send(requestId, {
+        metadata: msg.metadata,
+        triples: allTriples,
+      });
+    }
+
+    if (allEntityContexts.length > 0) {
+      await entityContextsProducer.send(requestId, {
+        metadata: msg.metadata,
+        entities: allEntityContexts,
+      });
+    }
+  }
+}
+
+// ---------- Helpers ----------
+
+function toEntityIri(name: string): Term {
+  const slug = encodeURIComponent(name.toLowerCase().replace(/\s+/g, "-"));
+  return {
+    type: "IRI",
+    iri: `http://trustgraph.ai/e/${slug}`,
+  };
+}
+
+function iriTerm(iri: string): Term {
+  return { type: "IRI", iri };
+}
+
+function literalTerm(value: string): Term {
+  return { type: "LITERAL", value };
+}
+
+/**
+ * Parse JSON from LLM output, handling markdown code fences and malformed output.
+ */
+function parseJsonResponse<T>(raw: string): T | null {
+  try {
+    // Strip markdown code fences
+    let cleaned = raw.trim();
+
+    // Remove ```json ... ``` or ``` ... ```
+    const fenceMatch = cleaned.match(/^```(?:json)?\s*\n?([\s\S]*?)\n?```$/);
+    if (fenceMatch) {
+      cleaned = fenceMatch[1].trim();
+    }
+
+    return JSON.parse(cleaned) as T;
+  } catch {
+    console.warn("[KnowledgeExtract] Failed to parse JSON from LLM response:", raw.slice(0, 200));
+    return null;
+  }
+}
+
+export async function run(): Promise<void> {
+  await KnowledgeExtractService.launch("knowledge-extract");
+}

ts/packages/flow/src/gateway/dispatch/serialize.ts

@@ -229,6 +229,7 @@ function deepInternalToClient(value: unknown): unknown {
 const TERM_BEARING_REQUEST_SERVICES = new Set([
   "triples",
   "knowledge",
+  "librarian",
 ]);
 
 /**
@@ -238,6 +239,7 @@ const TERM_BEARING_RESPONSE_SERVICES = new Set([
   "triples",
   "graph-embeddings",
   "knowledge",
+  "librarian",
 ]);
 
 // ---------- Top-level request / response translators ----------

ts/packages/flow/src/index.ts

@@ -44,3 +44,20 @@ export { PromptTemplateService, type PromptTemplate, type PromptTemplateConfig }
 
 // Config service
 export { ConfigService, type ConfigServiceConfig } from "./config/service.js";
+
+// ReAct agent
+export { AgentService } from "./agent/react/index.js";
+
+// Librarian service
+export { LibrarianService, type LibrarianServiceConfig } from "./librarian/service.js";
+export { CollectionManager, type CollectionEntry } from "./librarian/collection-manager.js";
+
+// Chunking service
+export { recursiveSplit } from "./chunking/recursive-splitter.js";
+export { ChunkingService } from "./chunking/service.js";
+
+// Knowledge extraction service
+export { KnowledgeExtractService } from "./extract/knowledge-extract.js";
+
+// Knowledge core service
+export { KnowledgeCoreService, type KnowledgeCoreServiceConfig } from "./cores/service.js";

ts/packages/flow/src/librarian/collection-manager.ts

@@ -0,0 +1,73 @@
+/**
+ * Collection manager — in-memory CRUD for document collections.
+ *
+ * Used by LibrarianService to manage collections per-user.
+ * MVP: purely in-memory, no persistence (state is persisted
+ * via the parent LibrarianService JSON snapshot).
+ */
+
+export interface CollectionEntry {
+  user: string;
+  collection: string;
+  name: string;
+  description: string;
+  tags: string[];
+}
+
+export class CollectionManager {
+  /** keyed by `${user}:${collection}` */
+  private collections = new Map<string, CollectionEntry>();
+
+  private key(user: string, collection: string): string {
+    return `${user}:${collection}`;
+  }
+
+  listCollections(user: string): CollectionEntry[] {
+    const result: CollectionEntry[] = [];
+    for (const entry of this.collections.values()) {
+      if (entry.user === user) {
+        result.push(entry);
+      }
+    }
+    return result;
+  }
+
+  getCollection(user: string, collection: string): CollectionEntry | undefined {
+    return this.collections.get(this.key(user, collection));
+  }
+
+  updateCollection(
+    user: string,
+    collection: string,
+    name: string,
+    description: string,
+    tags: string[],
+  ): CollectionEntry {
+    const entry: CollectionEntry = { user, collection, name, description, tags };
+    this.collections.set(this.key(user, collection), entry);
+    return entry;
+  }
+
+  deleteCollection(user: string, collection: string): boolean {
+    return this.collections.delete(this.key(user, collection));
+  }
+
+  ensureCollectionExists(user: string, collection: string): CollectionEntry {
+    const existing = this.getCollection(user, collection);
+    if (existing) return existing;
+    return this.updateCollection(user, collection, collection, "", []);
+  }
+
+  /** Serialize to a plain array for JSON persistence. */
+  toJSON(): CollectionEntry[] {
+    return [...this.collections.values()];
+  }
+
+  /** Restore from a serialized array. */
+  loadFromJSON(entries: CollectionEntry[]): void {
+    this.collections.clear();
+    for (const entry of entries) {
+      this.collections.set(this.key(entry.user, entry.collection), entry);
+    }
+  }
+}

ts/packages/flow/src/librarian/service.ts

@@ -0,0 +1,502 @@
+/**
+ * Librarian service — manages document storage, metadata, and processing records.
+ *
+ * An AsyncProcessor (NOT FlowProcessor) that:
+ * 1. Listens on librarian-request and collection-management-request topics
+ * 2. Handles CRUD operations for documents, child documents, processing records
+ * 3. Handles collection management (list, update, delete)
+ * 4. Stores document files on disk, metadata in-memory (persisted to JSON)
+ *
+ * Python reference: trustgraph-flow/trustgraph/librarian/service/service.py
+ */
+
+import { randomUUID } from "node:crypto";
+import { readFile, writeFile, mkdir, unlink } from "node:fs/promises";
+import { dirname, join } from "node:path";
+import {
+  AsyncProcessor,
+  type ProcessorConfig,
+  topics,
+  type LibrarianRequest,
+  type LibrarianResponse,
+  type CollectionManagementRequest,
+  type CollectionManagementResponse,
+  type DocumentMetadata,
+  type ProcessingMetadata,
+} from "@trustgraph/base";
+import type { BackendProducer, BackendConsumer, Message } from "@trustgraph/base";
+import { CollectionManager } from "./collection-manager.js";
+
+export interface LibrarianServiceConfig extends ProcessorConfig {
+  dataDir?: string;
+}
+
+export class LibrarianService extends AsyncProcessor {
+  private documents = new Map<string, DocumentMetadata>();
+  private processing = new Map<string, ProcessingMetadata>();
+  private collectionManager = new CollectionManager();
+  private readonly dataDir: string;
+  private readonly persistPath: string;
+
+  // Librarian topic consumers/producers
+  private libConsumer: BackendConsumer<LibrarianRequest> | null = null;
+  private libProducer: BackendProducer<LibrarianResponse> | null = null;
+
+  // Collection management topic consumers/producers
+  private colConsumer: BackendConsumer<CollectionManagementRequest> | null = null;
+  private colProducer: BackendProducer<CollectionManagementResponse> | null = null;
+
+  constructor(config: LibrarianServiceConfig) {
+    super(config);
+    this.dataDir = config.dataDir ?? process.env.LIBRARIAN_DATA_DIR ?? "./data/librarian";
+    this.persistPath = join(this.dataDir, "librarian-state.json");
+  }
+
+  protected override async run(): Promise<void> {
+    // Ensure directories exist
+    await mkdir(join(this.dataDir, "docs"), { recursive: true });
+
+    // Load persisted state
+    await this.loadFromDisk();
+
+    // Create producers
+    this.libProducer = await this.pubsub.createProducer<LibrarianResponse>({
+      topic: topics.librarianResponse,
+    });
+    this.colProducer = await this.pubsub.createProducer<CollectionManagementResponse>({
+      topic: topics.collectionManagementResponse,
+    });
+
+    // Create consumers
+    this.libConsumer = await this.pubsub.createConsumer<LibrarianRequest>({
+      topic: topics.librarianRequest,
+      subscription: `${this.config.id}-librarian-request`,
+    });
+    this.colConsumer = await this.pubsub.createConsumer<CollectionManagementRequest>({
+      topic: topics.collectionManagementRequest,
+      subscription: `${this.config.id}-collection-management-request`,
+    });
+
+    console.log(`[LibrarianService] Listening on ${topics.librarianRequest} and ${topics.collectionManagementRequest}`);
+
+    // Main consume loop — poll both consumers
+    while (this.running) {
+      try {
+        // Poll librarian requests
+        const libMsg = await this.libConsumer.receive(500);
+        if (libMsg) {
+          await this.handleLibrarianMessage(libMsg);
+          await this.libConsumer.acknowledge(libMsg);
+        }
+
+        // Poll collection management requests
+        const colMsg = await this.colConsumer.receive(500);
+        if (colMsg) {
+          await this.handleCollectionMessage(colMsg);
+          await this.colConsumer.acknowledge(colMsg);
+        }
+      } catch (err) {
+        if (!this.running) break;
+        console.error("[LibrarianService] Error in consume loop:", err);
+        await sleep(1000);
+      }
+    }
+  }
+
+  // ---------- Librarian message handling ----------
+
+  private async handleLibrarianMessage(msg: Message<LibrarianRequest>): Promise<void> {
+    const request = msg.value();
+    const props = msg.properties();
+    const requestId = props.id;
+
+    if (!requestId) {
+      console.warn("[LibrarianService] Received request without id, ignoring");
+      return;
+    }
+
+    try {
+      const response = await this.handleLibrarianOperation(request);
+      await this.libProducer!.send(response, { id: requestId });
+    } catch (err) {
+      const message = err instanceof Error ? err.message : String(err);
+      await this.libProducer!.send(
+        { error: { type: "librarian-error", message } },
+        { id: requestId },
+      );
+    }
+  }
+
+  private async handleLibrarianOperation(request: LibrarianRequest): Promise<LibrarianResponse> {
+    switch (request.operation) {
+      case "add-document":
+        return this.addDocument(request);
+      case "remove-document":
+        return this.removeDocument(request);
+      case "list-documents":
+        return this.listDocuments(request);
+      case "get-document-metadata":
+        return this.getDocumentMetadata(request);
+      case "get-document-content":
+        return this.getDocumentContent(request);
+      case "add-child-document":
+        return this.addChildDocument(request);
+      case "list-children":
+        return this.listChildren(request);
+      case "add-processing":
+        return this.addProcessing(request);
+      case "remove-processing":
+        return this.removeProcessing(request);
+      case "list-processing":
+        return this.listProcessing(request);
+      default:
+        throw new Error(`Unknown librarian operation: ${request.operation as string}`);
+    }
+  }
+
+  private async addDocument(request: LibrarianRequest): Promise<LibrarianResponse> {
+    const meta = request.documentMetadata;
+    if (!meta) throw new Error("add-document requires documentMetadata");
+
+    const id = randomUUID();
+    const now = Date.now();
+
+    const doc: DocumentMetadata = {
+      ...meta,
+      id,
+      time: now,
+    };
+
+    this.documents.set(id, doc);
+
+    // Store file content if provided
+    if (request.content) {
+      const filePath = join(this.dataDir, "docs", `${id}.bin`);
+      const buf = Buffer.from(request.content, "base64");
+      await writeFile(filePath, buf);
+    }
+
+    await this.persist();
+    console.log(`[LibrarianService] Added document ${id}: ${doc.title}`);
+
+    return { documentMetadata: doc };
+  }
+
+  private async removeDocument(request: LibrarianRequest): Promise<LibrarianResponse> {
+    const id = request.documentId;
+    if (!id) throw new Error("remove-document requires documentId");
+
+    // Remove the document itself
+    this.documents.delete(id);
+
+    // Remove the file
+    try {
+      await unlink(join(this.dataDir, "docs", `${id}.bin`));
+    } catch {
+      // File may not exist — that's fine
+    }
+
+    // Cascade: remove children
+    const childIds = [...this.documents.entries()]
+      .filter(([, doc]) => doc.parentId === id)
+      .map(([childId]) => childId);
+
+    for (const childId of childIds) {
+      this.documents.delete(childId);
+      try {
+        await unlink(join(this.dataDir, "docs", `${childId}.bin`));
+      } catch {
+        // ignore
+      }
+    }
+
+    // Remove associated processing records
+    const procIds = [...this.processing.entries()]
+      .filter(([, proc]) => proc.documentId === id)
+      .map(([procId]) => procId);
+
+    for (const procId of procIds) {
+      this.processing.delete(procId);
+    }
+
+    await this.persist();
+    console.log(`[LibrarianService] Removed document ${id} (cascade: ${childIds.length} children, ${procIds.length} processing)`);
+
+    return {};
+  }
+
+  private listDocuments(request: LibrarianRequest): LibrarianResponse {
+    const user = request.user ?? "";
+    const docs: DocumentMetadata[] = [];
+
+    for (const doc of this.documents.values()) {
+      // Filter by user
+      if (user && doc.user !== user) continue;
+      // Exclude children (only top-level documents) unless explicitly requested
+      if (doc.parentId) continue;
+      docs.push(doc);
+    }
+
+    return { documents: docs };
+  }
+
+  private getDocumentMetadata(request: LibrarianRequest): LibrarianResponse {
+    const id = request.documentId;
+    if (!id) throw new Error("get-document-metadata requires documentId");
+
+    const doc = this.documents.get(id);
+    if (!doc) throw new Error(`Document not found: ${id}`);
+
+    return { documentMetadata: doc };
+  }
+
+  private async getDocumentContent(request: LibrarianRequest): Promise<LibrarianResponse> {
+    const id = request.documentId;
+    if (!id) throw new Error("get-document-content requires documentId");
+
+    const doc = this.documents.get(id);
+    if (!doc) throw new Error(`Document not found: ${id}`);
+
+    try {
+      const filePath = join(this.dataDir, "docs", `${id}.bin`);
+      const buf = await readFile(filePath);
+      const content = buf.toString("base64");
+      return { documentMetadata: doc, content };
+    } catch {
+      throw new Error(`Document content not found on disk: ${id}`);
+    }
+  }
+
+  private async addChildDocument(request: LibrarianRequest): Promise<LibrarianResponse> {
+    const meta = request.documentMetadata;
+    if (!meta) throw new Error("add-child-document requires documentMetadata");
+    if (!meta.parentId) throw new Error("add-child-document requires parentId in metadata");
+
+    // Verify parent exists
+    if (!this.documents.has(meta.parentId)) {
+      throw new Error(`Parent document not found: ${meta.parentId}`);
+    }
+
+    const id = randomUUID();
+    const now = Date.now();
+
+    const doc: DocumentMetadata = {
+      ...meta,
+      id,
+      time: now,
+    };
+
+    this.documents.set(id, doc);
+
+    // Store file content if provided
+    if (request.content) {
+      const filePath = join(this.dataDir, "docs", `${id}.bin`);
+      const buf = Buffer.from(request.content, "base64");
+      await writeFile(filePath, buf);
+    }
+
+    await this.persist();
+    console.log(`[LibrarianService] Added child document ${id} (parent: ${meta.parentId})`);
+
+    return { documentMetadata: doc };
+  }
+
+  private listChildren(request: LibrarianRequest): LibrarianResponse {
+    const parentId = request.documentId;
+    if (!parentId) throw new Error("list-children requires documentId");
+
+    const children: DocumentMetadata[] = [];
+    for (const doc of this.documents.values()) {
+      if (doc.parentId === parentId) {
+        children.push(doc);
+      }
+    }
+
+    return { documents: children };
+  }
+
+  private async addProcessing(request: LibrarianRequest): Promise<LibrarianResponse> {
+    const proc = request.processingMetadata;
+    if (!proc) throw new Error("add-processing requires processingMetadata");
+
+    const id = randomUUID();
+    const now = Date.now();
+
+    const record: ProcessingMetadata = {
+      ...proc,
+      id,
+      time: now,
+    };
+
+    this.processing.set(id, record);
+    await this.persist();
+
+    console.log(`[LibrarianService] Added processing ${id} for document ${proc.documentId}`);
+    return { processing: [record] };
+  }
+
+  private async removeProcessing(request: LibrarianRequest): Promise<LibrarianResponse> {
+    const id = request.processingId;
+    if (!id) throw new Error("remove-processing requires processingId");
+
+    this.processing.delete(id);
+    await this.persist();
+
+    return {};
+  }
+
+  private listProcessing(request: LibrarianRequest): LibrarianResponse {
+    const documentId = request.documentId;
+    const records: ProcessingMetadata[] = [];
+
+    for (const proc of this.processing.values()) {
+      if (documentId && proc.documentId !== documentId) continue;
+      records.push(proc);
+    }
+
+    return { processing: records };
+  }
+
+  // ---------- Collection management ----------
+
+  private async handleCollectionMessage(msg: Message<CollectionManagementRequest>): Promise<void> {
+    const request = msg.value();
+    const props = msg.properties();
+    const requestId = props.id;
+
+    if (!requestId) {
+      console.warn("[LibrarianService] Received collection request without id, ignoring");
+      return;
+    }
+
+    try {
+      const response = this.handleCollectionOperation(request);
+      await this.colProducer!.send(response, { id: requestId });
+    } catch (err) {
+      const message = err instanceof Error ? err.message : String(err);
+      await this.colProducer!.send(
+        { error: { type: "collection-error", message } },
+        { id: requestId },
+      );
+    }
+  }
+
+  private handleCollectionOperation(request: CollectionManagementRequest): CollectionManagementResponse {
+    switch (request.operation) {
+      case "list-collections": {
+        const user = request.user ?? "";
+        const collections = this.collectionManager.listCollections(user);
+        return { collections };
+      }
+
+      case "update-collection": {
+        const user = request.user ?? "";
+        const collection = request.collection ?? "";
+        const name = request.name ?? collection;
+        const description = request.description ?? "";
+        const tags = request.tags ?? [];
+
+        this.collectionManager.updateCollection(user, collection, name, description, tags);
+        // Persist after mutation
+        this.persist().catch((err) => console.error("[LibrarianService] Persist failed:", err));
+
+        const collections = this.collectionManager.listCollections(user);
+        return { collections };
+      }
+
+      case "delete-collection": {
+        const user = request.user ?? "";
+        const collection = request.collection ?? "";
+
+        this.collectionManager.deleteCollection(user, collection);
+        this.persist().catch((err) => console.error("[LibrarianService] Persist failed:", err));
+
+        return {};
+      }
+
+      default:
+        throw new Error(`Unknown collection operation: ${request.operation as string}`);
+    }
+  }
+
+  // ---------- Persistence ----------
+
+  private async persist(): Promise<void> {
+    try {
+      const data = {
+        documents: Object.fromEntries(this.documents),
+        processing: Object.fromEntries(this.processing),
+        collections: this.collectionManager.toJSON(),
+      };
+
+      const json = JSON.stringify(data, null, 2);
+      await mkdir(dirname(this.persistPath), { recursive: true });
+      await writeFile(this.persistPath, json, "utf-8");
+    } catch (err) {
+      console.error("[LibrarianService] Failed to persist state:", err);
+    }
+  }
+
+  private async loadFromDisk(): Promise<void> {
+    try {
+      const raw = await readFile(this.persistPath, "utf-8");
+      const parsed = JSON.parse(raw) as {
+        documents?: Record<string, DocumentMetadata>;
+        processing?: Record<string, ProcessingMetadata>;
+        collections?: Array<{ user: string; collection: string; name: string; description: string; tags: string[] }>;
+      };
+
+      this.documents.clear();
+      if (parsed.documents) {
+        for (const [id, doc] of Object.entries(parsed.documents)) {
+          this.documents.set(id, doc);
+        }
+      }
+
+      this.processing.clear();
+      if (parsed.processing) {
+        for (const [id, proc] of Object.entries(parsed.processing)) {
+          this.processing.set(id, proc);
+        }
+      }
+
+      if (parsed.collections) {
+        this.collectionManager.loadFromJSON(parsed.collections);
+      }
+
+      console.log(
+        `[LibrarianService] Loaded persisted state (documents=${this.documents.size}, processing=${this.processing.size})`,
+      );
+    } catch {
+      console.log("[LibrarianService] No persisted state found, starting fresh");
+    }
+  }
+
+  override async stop(): Promise<void> {
+    if (this.libConsumer) {
+      await this.libConsumer.close();
+      this.libConsumer = null;
+    }
+    if (this.libProducer) {
+      await this.libProducer.close();
+      this.libProducer = null;
+    }
+    if (this.colConsumer) {
+      await this.colConsumer.close();
+      this.colConsumer = null;
+    }
+    if (this.colProducer) {
+      await this.colProducer.close();
+      this.colProducer = null;
+    }
+    await super.stop();
+  }
+}
+
+function sleep(ms: number): Promise<void> {
+  return new Promise((resolve) => setTimeout(resolve, ms));
+}
+
+export async function run(): Promise<void> {
+  await LibrarianService.launch("librarian-svc");
+}

ts/scripts/run-agent.ts

@@ -0,0 +1,14 @@
+/**
+ * Start the ReAct agent service.
+ *
+ * Usage: pnpm tsx scripts/run-agent.ts
+ *
+ * Env:
+ *   NATS_URL (default: nats://localhost:4222)
+ */
+import { run } from "../packages/flow/src/agent/react/service.js";
+
+run().catch((err) => {
+  console.error("Agent service failed:", err);
+  process.exit(1);
+});

ts/scripts/run-knowledge.ts

@@ -0,0 +1,15 @@
+/**
+ * Start the knowledge core service.
+ *
+ * Usage: pnpm tsx scripts/run-knowledge.ts
+ *
+ * Env:
+ *   NATS_URL            (default: nats://localhost:4222)
+ *   KNOWLEDGE_DATA_DIR  (optional, e.g., ./data/knowledge)
+ */
+import { run } from "../packages/flow/src/cores/service.js";
+
+run().catch((err) => {
+  console.error("Knowledge core service failed:", err);
+  process.exit(1);
+});

ts/scripts/run-librarian.ts

@@ -0,0 +1,15 @@
+/**
+ * Start the librarian service.
+ *
+ * Usage: pnpm tsx scripts/run-librarian.ts
+ *
+ * Env:
+ *   NATS_URL           (default: nats://localhost:4222)
+ *   LIBRARIAN_DATA_DIR (optional, e.g., ./data/librarian)
+ */
+import { run } from "../packages/flow/src/librarian/service.js";
+
+run().catch((err) => {
+  console.error("Librarian service failed:", err);
+  process.exit(1);
+});