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Extract-time provenance (#661)
1. Shared Provenance Module - URI generators, namespace constants,
triple builders, vocabulary bootstrap
2. Librarian - Emits document metadata to graph on processing
initiation (vocabulary bootstrap + PROV-O triples)
3. PDF Extractor - Saves pages as child documents, emits parent-child
provenance edges, forwards page IDs
4. Chunker - Saves chunks as child documents, emits provenance edges,
forwards chunk ID + content
5. Knowledge Extractors (both definitions and relationships):
- Link entities to chunks via SUBJECT_OF (not top-level document)
- Removed duplicate metadata emission (now handled by librarian)
- Get chunk_doc_id and chunk_uri from incoming Chunk message
6. Embedding Provenance:
- EntityContext schema has chunk_id field
- EntityEmbeddings schema has chunk_id field
- Definitions extractor sets chunk_id when creating EntityContext
- Graph embeddings processor passes chunk_id through to
EntityEmbeddings
Provenance Flow:
Document → Page (PDF) → Chunk → Extracted Facts/Embeddings
↓ ↓ ↓ ↓
librarian librarian librarian (chunk_id reference)
+ graph + graph + graph
Each artifact is stored in librarian with parent-child linking, and PROV-O
edges are emitted to the knowledge graph for full traceability from any
extracted fact back to its source document.
Also, updating tests
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20 changed files with 1601 additions and 59 deletions
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@ -176,6 +176,9 @@ class TestRecursiveChunkerSimple(IsolatedAsyncioTestCase):
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processor = Processor(**config)
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# Mock save_child_document to avoid waiting for librarian response
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processor.save_child_document = AsyncMock(return_value="mock-doc-id")
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# Mock message with TextDocument
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mock_message = MagicMock()
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mock_text_doc = MagicMock()
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@ -192,11 +195,13 @@ class TestRecursiveChunkerSimple(IsolatedAsyncioTestCase):
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# Mock consumer and flow with parameter overrides
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mock_consumer = MagicMock()
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mock_producer = AsyncMock()
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mock_triples_producer = AsyncMock()
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mock_flow = MagicMock()
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mock_flow.side_effect = lambda param: {
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"chunk-size": 1500,
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"chunk-overlap": 150,
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"output": mock_producer
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"output": mock_producer,
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"triples": mock_triples_producer,
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}.get(param)
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# Act
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