From bec94d95ee86618e210149809101f65de98fa8ab Mon Sep 17 00:00:00 2001 From: Salil M Date: Fri, 15 May 2026 17:10:57 +0530 Subject: [PATCH] Fix test collection module errors & silence upstream Pytest warnings (#823) * chore: add virtual environment and .env directories to gitignore * test: filter upstream DeprecationWarning and UserWarning messages * fix(namespace): remove empty __init__.py files to fix PEP 420 implicit namespace routing for trustgraph sub-packages --- .gitignore | 5 ++++- tests/pytest.ini | 8 +++++++- trustgraph-base/trustgraph/clients/__init__.py | 0 trustgraph-base/trustgraph/objects/__init__.py | 0 trustgraph-embeddings-hf/trustgraph/__init__.py | 0 .../trustgraph/embeddings/__init__.py | 0 trustgraph-flow/trustgraph/__init__.py | 0 trustgraph-flow/trustgraph/agent/__init__.py | 0 trustgraph-flow/trustgraph/chunking/__init__.py | 0 trustgraph-flow/trustgraph/decoding/__init__.py | 0 trustgraph-flow/trustgraph/direct/__init__.py | 0 trustgraph-flow/trustgraph/embeddings/__init__.py | 0 trustgraph-flow/trustgraph/external/__init__.py | 0 trustgraph-flow/trustgraph/extract/__init__.py | 0 trustgraph-flow/trustgraph/extract/kg/__init__.py | 0 trustgraph-flow/trustgraph/model/__init__.py | 0 .../trustgraph/model/text_completion/__init__.py | 0 trustgraph-flow/trustgraph/prompt/__init__.py | 0 trustgraph-flow/trustgraph/query/__init__.py | 0 .../trustgraph/query/doc_embeddings/__init__.py | 0 .../trustgraph/query/graph_embeddings/__init__.py | 0 trustgraph-flow/trustgraph/query/rows/__init__.py | 0 trustgraph-flow/trustgraph/query/triples/__init__.py | 0 trustgraph-flow/trustgraph/retrieval/__init__.py | 0 trustgraph-flow/trustgraph/storage/__init__.py | 0 .../trustgraph/storage/doc_embeddings/__init__.py | 0 .../trustgraph/storage/graph_embeddings/__init__.py | 0 trustgraph-flow/trustgraph/storage/rows/__init__.py | 0 trustgraph-flow/trustgraph/storage/triples/__init__.py | 0 trustgraph-flow/trustgraph/tables/__init__.py | 0 30 files changed, 11 insertions(+), 2 deletions(-) delete mode 100644 trustgraph-base/trustgraph/clients/__init__.py delete mode 100644 trustgraph-base/trustgraph/objects/__init__.py delete mode 100644 trustgraph-embeddings-hf/trustgraph/__init__.py delete mode 100644 trustgraph-embeddings-hf/trustgraph/embeddings/__init__.py delete mode 100644 trustgraph-flow/trustgraph/__init__.py delete mode 100644 trustgraph-flow/trustgraph/agent/__init__.py delete mode 100644 trustgraph-flow/trustgraph/chunking/__init__.py delete mode 100644 trustgraph-flow/trustgraph/decoding/__init__.py delete mode 100644 trustgraph-flow/trustgraph/direct/__init__.py delete mode 100644 trustgraph-flow/trustgraph/embeddings/__init__.py delete mode 100644 trustgraph-flow/trustgraph/external/__init__.py delete mode 100644 trustgraph-flow/trustgraph/extract/__init__.py delete mode 100644 trustgraph-flow/trustgraph/extract/kg/__init__.py delete mode 100644 trustgraph-flow/trustgraph/model/__init__.py delete mode 100644 trustgraph-flow/trustgraph/model/text_completion/__init__.py delete mode 100644 trustgraph-flow/trustgraph/prompt/__init__.py delete mode 100644 trustgraph-flow/trustgraph/query/__init__.py delete mode 100644 trustgraph-flow/trustgraph/query/doc_embeddings/__init__.py delete mode 100644 trustgraph-flow/trustgraph/query/graph_embeddings/__init__.py delete mode 100644 trustgraph-flow/trustgraph/query/rows/__init__.py delete mode 100644 trustgraph-flow/trustgraph/query/triples/__init__.py delete mode 100644 trustgraph-flow/trustgraph/retrieval/__init__.py delete mode 100644 trustgraph-flow/trustgraph/storage/__init__.py delete mode 100644 trustgraph-flow/trustgraph/storage/doc_embeddings/__init__.py delete mode 100644 trustgraph-flow/trustgraph/storage/graph_embeddings/__init__.py delete mode 100644 trustgraph-flow/trustgraph/storage/rows/__init__.py delete mode 100644 trustgraph-flow/trustgraph/storage/triples/__init__.py delete mode 100644 trustgraph-flow/trustgraph/tables/__init__.py diff --git a/.gitignore b/.gitignore index 32942156..366edb4a 100644 --- a/.gitignore +++ b/.gitignore @@ -16,4 +16,7 @@ trustgraph-vertexai/trustgraph/vertexai_version.py trustgraph-unstructured/trustgraph/unstructured_version.py trustgraph-mcp/trustgraph/mcp_version.py trustgraph/trustgraph/trustgraph_version.py -vertexai/ \ No newline at end of file +vertexai/ +venv/ +.venv/ +.env diff --git a/tests/pytest.ini b/tests/pytest.ini index 5dcc095c..fea8f228 100644 --- a/tests/pytest.ini +++ b/tests/pytest.ini @@ -16,4 +16,10 @@ markers = unit: marks tests as unit tests contract: marks tests as contract tests (service interface validation) vertexai: marks tests as vertex ai specific tests - asyncio: marks tests that use asyncio \ No newline at end of file + asyncio: marks tests that use asyncio +filterwarnings = + ignore:Core Pydantic V1 functionality isn't compatible with Python 3.14.*:UserWarning + ignore:builtin type SwigPyPacked has no __module__ attribute:DeprecationWarning + ignore:builtin type SwigPyObject has no __module__ attribute:DeprecationWarning + ignore:builtin type swigvarlink has no __module__ attribute:DeprecationWarning + ignore:.*_UnionGenericAlias.*is deprecated and slated for removal in Python 3.17:DeprecationWarning \ No newline at end of file diff --git a/trustgraph-base/trustgraph/clients/__init__.py b/trustgraph-base/trustgraph/clients/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-base/trustgraph/objects/__init__.py b/trustgraph-base/trustgraph/objects/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-embeddings-hf/trustgraph/__init__.py b/trustgraph-embeddings-hf/trustgraph/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-embeddings-hf/trustgraph/embeddings/__init__.py b/trustgraph-embeddings-hf/trustgraph/embeddings/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/__init__.py b/trustgraph-flow/trustgraph/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/agent/__init__.py b/trustgraph-flow/trustgraph/agent/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/chunking/__init__.py b/trustgraph-flow/trustgraph/chunking/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/decoding/__init__.py b/trustgraph-flow/trustgraph/decoding/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/direct/__init__.py b/trustgraph-flow/trustgraph/direct/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/embeddings/__init__.py b/trustgraph-flow/trustgraph/embeddings/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/external/__init__.py b/trustgraph-flow/trustgraph/external/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/extract/__init__.py b/trustgraph-flow/trustgraph/extract/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/extract/kg/__init__.py b/trustgraph-flow/trustgraph/extract/kg/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/model/__init__.py b/trustgraph-flow/trustgraph/model/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/model/text_completion/__init__.py b/trustgraph-flow/trustgraph/model/text_completion/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/prompt/__init__.py b/trustgraph-flow/trustgraph/prompt/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/query/__init__.py b/trustgraph-flow/trustgraph/query/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/query/doc_embeddings/__init__.py b/trustgraph-flow/trustgraph/query/doc_embeddings/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/query/graph_embeddings/__init__.py b/trustgraph-flow/trustgraph/query/graph_embeddings/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/query/rows/__init__.py b/trustgraph-flow/trustgraph/query/rows/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/query/triples/__init__.py b/trustgraph-flow/trustgraph/query/triples/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/retrieval/__init__.py b/trustgraph-flow/trustgraph/retrieval/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/storage/__init__.py b/trustgraph-flow/trustgraph/storage/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/storage/doc_embeddings/__init__.py b/trustgraph-flow/trustgraph/storage/doc_embeddings/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/storage/graph_embeddings/__init__.py b/trustgraph-flow/trustgraph/storage/graph_embeddings/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/storage/rows/__init__.py b/trustgraph-flow/trustgraph/storage/rows/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/storage/triples/__init__.py b/trustgraph-flow/trustgraph/storage/triples/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/trustgraph-flow/trustgraph/tables/__init__.py b/trustgraph-flow/trustgraph/tables/__init__.py deleted file mode 100644 index e69de29b..00000000