trustgraph/tests/unit/test_knowledge_graph/conftest.py

203 lines
5.1 KiB
Python
Raw Normal View History

Release/v1.2 (#457) * Bump setup.py versions for 1.1 * PoC MCP server (#419) * Very initial MCP server PoC for TrustGraph * Put service on port 8000 * Add MCP container and packages to buildout * Update docs for API/CLI changes in 1.0 (#421) * Update some API basics for the 0.23/1.0 API change * Add MCP container push (#425) * Add command args to the MCP server (#426) * Host and port parameters * Added websocket arg * More docs * MCP client support (#427) - MCP client service - Tool request/response schema - API gateway support for mcp-tool - Message translation for tool request & response - Make mcp-tool using configuration service for information about where the MCP services are. * Feature/react call mcp (#428) Key Features - MCP Tool Integration: Added core MCP tool support with ToolClientSpec and ToolClient classes - API Enhancement: New mcp_tool method for flow-specific tool invocation - CLI Tooling: New tg-invoke-mcp-tool command for testing MCP integration - React Agent Enhancement: Fixed and improved multi-tool invocation capabilities - Tool Management: Enhanced CLI for tool configuration and management Changes - Added MCP tool invocation to API with flow-specific integration - Implemented ToolClientSpec and ToolClient for tool call handling - Updated agent-manager-react to invoke MCP tools with configurable types - Enhanced CLI with new commands and improved help text - Added comprehensive documentation for new CLI commands - Improved tool configuration management Testing - Added tg-invoke-mcp-tool CLI command for isolated MCP integration testing - Enhanced agent capability to invoke multiple tools simultaneously * Test suite executed from CI pipeline (#433) * Test strategy & test cases * Unit tests * Integration tests * Extending test coverage (#434) * Contract tests * Testing embeedings * Agent unit tests * Knowledge pipeline tests * Turn on contract tests * Increase storage test coverage (#435) * Fixing storage and adding tests * PR pipeline only runs quick tests * Empty configuration is returned as empty list, previously was not in response (#436) * Update config util to take files as well as command-line text (#437) * Updated CLI invocation and config model for tools and mcp (#438) * Updated CLI invocation and config model for tools and mcp * CLI anomalies * Tweaked the MCP tool implementation for new model * Update agent implementation to match the new model * Fix agent tools, now all tested * Fixed integration tests * Fix MCP delete tool params * Update Python deps to 1.2 * Update to enable knowledge extraction using the agent framework (#439) * Implement KG extraction agent (kg-extract-agent) * Using ReAct framework (agent-manager-react) * ReAct manager had an issue when emitting JSON, which conflicts which ReAct manager's own JSON messages, so refactored ReAct manager to use traditional ReAct messages, non-JSON structure. * Minor refactor to take the prompt template client out of prompt-template so it can be more readily used by other modules. kg-extract-agent uses this framework. * Migrate from setup.py to pyproject.toml (#440) * Converted setup.py to pyproject.toml * Modern package infrastructure as recommended by py docs * Install missing build deps (#441) * Install missing build deps (#442) * Implement logging strategy (#444) * Logging strategy and convert all prints() to logging invocations * Fix/startup failure (#445) * Fix loggin startup problems * Fix logging startup problems (#446) * Fix logging startup problems (#447) * Fixed Mistral OCR to use current API (#448) * Fixed Mistral OCR to use current API * Added PDF decoder tests * Fix Mistral OCR ident to be standard pdf-decoder (#450) * Fix Mistral OCR ident to be standard pdf-decoder * Correct test * Schema structure refactor (#451) * Write schema refactor spec * Implemented schema refactor spec * Structure data mvp (#452) * Structured data tech spec * Architecture principles * New schemas * Updated schemas and specs * Object extractor * Add .coveragerc * New tests * Cassandra object storage * Trying to object extraction working, issues exist * Validate librarian collection (#453) * Fix token chunker, broken API invocation (#454) * Fix token chunker, broken API invocation (#455) * Knowledge load utility CLI (#456) * Knowledge loader * More tests
2025-08-18 20:56:09 +01:00
"""
Shared fixtures for knowledge graph unit tests
"""
import pytest
from unittest.mock import Mock, AsyncMock
# Mock schema classes for testing
class Value:
def __init__(self, value, is_uri, type):
self.value = value
self.is_uri = is_uri
self.type = type
class Triple:
def __init__(self, s, p, o):
self.s = s
self.p = p
self.o = o
class Metadata:
def __init__(self, id, user, collection, metadata):
self.id = id
self.user = user
self.collection = collection
self.metadata = metadata
class Triples:
def __init__(self, metadata, triples):
self.metadata = metadata
self.triples = triples
class Chunk:
def __init__(self, metadata, chunk):
self.metadata = metadata
self.chunk = chunk
@pytest.fixture
def sample_text():
"""Sample text for entity extraction testing"""
return "John Smith works for OpenAI in San Francisco. He is a software engineer who developed GPT models."
@pytest.fixture
def sample_entities():
"""Sample extracted entities for testing"""
return [
{"text": "John Smith", "type": "PERSON", "start": 0, "end": 10},
{"text": "OpenAI", "type": "ORG", "start": 21, "end": 27},
{"text": "San Francisco", "type": "GPE", "start": 31, "end": 44},
{"text": "software engineer", "type": "TITLE", "start": 55, "end": 72},
{"text": "GPT models", "type": "PRODUCT", "start": 87, "end": 97}
]
@pytest.fixture
def sample_relationships():
"""Sample extracted relationships for testing"""
return [
{"subject": "John Smith", "predicate": "works_for", "object": "OpenAI"},
{"subject": "OpenAI", "predicate": "located_in", "object": "San Francisco"},
{"subject": "John Smith", "predicate": "has_title", "object": "software engineer"},
{"subject": "John Smith", "predicate": "developed", "object": "GPT models"}
]
@pytest.fixture
def sample_value_uri():
"""Sample URI Value object"""
return Value(
value="http://example.com/person/john-smith",
is_uri=True,
type=""
)
@pytest.fixture
def sample_value_literal():
"""Sample literal Value object"""
return Value(
value="John Smith",
is_uri=False,
type="string"
)
@pytest.fixture
def sample_triple(sample_value_uri, sample_value_literal):
"""Sample Triple object"""
return Triple(
s=sample_value_uri,
p=Value(value="http://schema.org/name", is_uri=True, type=""),
o=sample_value_literal
)
@pytest.fixture
def sample_triples(sample_triple):
"""Sample Triples batch object"""
metadata = Metadata(
id="test-doc-123",
user="test_user",
collection="test_collection",
metadata=[]
)
return Triples(
metadata=metadata,
triples=[sample_triple]
)
@pytest.fixture
def sample_chunk():
"""Sample text chunk for processing"""
metadata = Metadata(
id="test-chunk-456",
user="test_user",
collection="test_collection",
metadata=[]
)
return Chunk(
metadata=metadata,
chunk=b"Sample text chunk for knowledge graph extraction."
)
@pytest.fixture
def mock_nlp_model():
"""Mock NLP model for entity recognition"""
mock = Mock()
mock.process_text.return_value = [
{"text": "John Smith", "label": "PERSON", "start": 0, "end": 10},
{"text": "OpenAI", "label": "ORG", "start": 21, "end": 27}
]
return mock
@pytest.fixture
def mock_entity_extractor():
"""Mock entity extractor"""
def extract_entities(text):
if "John Smith" in text:
return [
{"text": "John Smith", "type": "PERSON", "confidence": 0.95},
{"text": "OpenAI", "type": "ORG", "confidence": 0.92}
]
return []
return extract_entities
@pytest.fixture
def mock_relationship_extractor():
"""Mock relationship extractor"""
def extract_relationships(entities, text):
return [
{"subject": "John Smith", "predicate": "works_for", "object": "OpenAI", "confidence": 0.88}
]
return extract_relationships
@pytest.fixture
def uri_base():
"""Base URI for testing"""
return "http://trustgraph.ai/kg"
@pytest.fixture
def namespace_mappings():
"""Namespace mappings for URI generation"""
return {
"person": "http://trustgraph.ai/kg/person/",
"org": "http://trustgraph.ai/kg/org/",
"place": "http://trustgraph.ai/kg/place/",
"schema": "http://schema.org/",
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#"
}
@pytest.fixture
def entity_type_mappings():
"""Entity type to namespace mappings"""
return {
"PERSON": "person",
"ORG": "org",
"GPE": "place",
"LOCATION": "place"
}
@pytest.fixture
def predicate_mappings():
"""Predicate mappings for relationships"""
return {
"works_for": "http://schema.org/worksFor",
"located_in": "http://schema.org/location",
"has_title": "http://schema.org/jobTitle",
"developed": "http://schema.org/creator"
}