Ship every paper-referenced experiment script

Reorganizes the repo so every section of the paper has a corresponding
script. Previously only the core recipe + control + evals were here.

New subdirs:
- tts/             — test-time sampling (§2.2, §3.3): scaling sweep, HE, MATH-500,
                     AIME, 14B-recipe + TTS, 8B-raw-TTS control.
- experiments/     — every §3 finding as a runnable script:
                     · self_consistency (§3.4)
                     · recipe_x_tts_synergy (§3.5, novel)
                     · mbpp_seeded_cross_arch (§3.9)
                     · cross_domain_code_to_math (§3.10)
                     · self_correction_math_{naive,fixed} (§3.10, the
                       catastrophic-then-recovered case)
                     · math500_seeded_mining (§3.10 distribution mismatch)
                     · bcb_hard_eval (§3.10 distribution mismatch)
                     · recursive_bootstrap (§3.10 plateau)
                     · diversity_cued_mining (§3.10 low yield)
                     · aime_scaling (TTS curve)
                     · star_baseline_gsm8k (related-work baseline)
- evals/           — moved out of recipe/ (eval_raw, eval_plus, confirm)

Also adds: bootstrap_14b_4bit_harvest, curriculum_code, math_bootstrap to
recipe/ for completeness.

REPRODUCE.md now maps each paper section / table / figure to its exact
script and expected output.
This commit is contained in:
Rana Usman 2026-05-13 21:09:54 +05:00
parent c867697f7c
commit 826f934d2e
27 changed files with 4467 additions and 134 deletions

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"""Confirm the peak +5 result on full HumanEval (164 problems) and try the cliff at 39 pairs."""
import os, sys, json, time, re, gc, subprocess, tempfile, argparse
os.environ.setdefault("HF_HOME", "/workspace/hf")
os.environ.setdefault("CUDA_VISIBLE_DEVICES", "0")
os.environ["TRANSFORMERS_VERBOSITY"] = "error"
import torch
from transformers import AutoModelForCausalLM, AutoTokenizer, TrainingArguments, Trainer
from datasets import load_dataset, Dataset as HFDataset
from peft import LoraConfig, get_peft_model
T0 = time.time()
def log(m): print(f"[{time.time()-T0:7.1f}s] {m}", flush=True)
def extract_code(text):
if "```python" in text: text = text.split("```python", 1)[1]
elif "```" in text: text = text.split("```", 1)[1]
if "```" in text: text = text.split("```", 1)[0]
return text.strip()
def run_python(code, timeout=10):
with tempfile.NamedTemporaryFile("w", suffix=".py", delete=False) as f:
f.write(code); path = f.name
try:
r = subprocess.run(["python3", path], capture_output=True, timeout=timeout, text=True, cwd="/tmp")
return r.returncode == 0
except subprocess.TimeoutExpired: return False
finally:
try: os.unlink(path)
except: pass
def gen_batch(model, tok, prompts, max_new=400, temperature=0.0, batch=4):
outs = []
for i in range(0, len(prompts), batch):
chunk = prompts[i:i+batch]
texts = []
for p in chunk:
msgs = [{"role": "system", "content": "You are a Python coder."},
{"role": "user", "content": p}]
texts.append(tok.apply_chat_template(msgs, tokenize=False, add_generation_prompt=True))
inp = tok(texts, return_tensors="pt", padding=True, truncation=True, max_length=1500).to(model.device)
with torch.no_grad():
out = model.generate(**inp, max_new_tokens=max_new, do_sample=temperature > 0,
temperature=temperature if temperature > 0 else 1.0, top_p=0.95,
pad_token_id=tok.eos_token_id)
for j in range(out.size(0)):
outs.append(tok.decode(out[j][inp.input_ids.shape[1]:], skip_special_tokens=True))
return outs
def humaneval_full(model, tok):
he = list(load_dataset("openai_humaneval", split="test"))
log(f" full HumanEval: {len(he)} problems")
prompts = [p["prompt"] + "\n# Complete the function above." for p in he]
outs = gen_batch(model, tok, prompts, max_new=400, temperature=0.0, batch=4)
correct = 0
for p, raw in zip(he, outs):
code = extract_code(raw) if "```" in raw else raw
full = p["prompt"] + "\n" + code if "def " not in code else code
test_code = full + "\n\n" + p["test"] + f"\n\ncheck({p['entry_point']})"
if run_python(test_code, timeout=10): correct += 1
return correct, len(he)
def make_example(r, tok):
user = f"Implement: {r['signature']}\n\nTests:\n{chr(10).join(r['tests'])}\n\nMy attempt:\n```python\n{r['broken']}\n```\n\nError:\n{r['error']}\n\nFix and output the corrected code only."
assistant = f"```python\n{r['fixed']}\n```"
msgs_pre = [{"role": "system", "content": "You are a Python coder."},
{"role": "user", "content": user}]
msgs_full = msgs_pre + [{"role": "assistant", "content": assistant}]
pre = tok.apply_chat_template(msgs_pre, tokenize=False, add_generation_prompt=True)
full = tok.apply_chat_template(msgs_full, tokenize=False)
pre_ids = tok(pre, add_special_tokens=False)["input_ids"]
full_ids = tok(full, add_special_tokens=False)["input_ids"]
MAX = 1024
full_ids = full_ids[:MAX]
labels = list(full_ids)
n_pre = min(len(pre_ids), len(labels))
for i in range(n_pre): labels[i] = -100
pad = MAX - len(full_ids)
return {"input_ids": full_ids + [tok.pad_token_id]*pad,
"attention_mask": [1]*len(full_ids) + [0]*pad,
"labels": labels + [-100]*pad}
def main():
ap = argparse.ArgumentParser()
ap.add_argument("--n_pairs", type=int, default=21, help="how many pairs from the saved set to train on")
ap.add_argument("--epochs", type=int, default=2)
ap.add_argument("--seed", type=int, default=42)
ap.add_argument("--tag", required=True)
args = ap.parse_args()
torch.manual_seed(args.seed)
pairs_path = "/workspace/bootstrap/bs_7b_v3/pairs.jsonl"
pairs = [json.loads(l) for l in open(pairs_path)]
log(f"loaded {len(pairs)} pairs from prior bootstrap run")
pairs_use = pairs[:args.n_pairs]
log(f"using {len(pairs_use)} for this run")
out_dir = f"/workspace/confirm/{args.tag}"
os.makedirs(out_dir, exist_ok=True)
log("loading Qwen/Qwen2.5-7B")
tok = AutoTokenizer.from_pretrained("Qwen/Qwen2.5-7B")
if tok.pad_token is None: tok.pad_token = tok.eos_token
tok.padding_side = "left"
model = AutoModelForCausalLM.from_pretrained("Qwen/Qwen2.5-7B", dtype=torch.bfloat16, device_map="cuda:0")
# Eval base
model.eval()
log("eval BASE on full HumanEval")
base_corr, base_total = humaneval_full(model, tok)
log(f" BASE: {base_corr}/{base_total}")
# Apply LoRA + train
lora_cfg = LoraConfig(r=16, lora_alpha=32, lora_dropout=0.05, bias="none",
target_modules=["q_proj", "k_proj", "v_proj", "o_proj"], task_type="CAUSAL_LM")
model = get_peft_model(model, lora_cfg)
log("LoRA applied")
tok.padding_side = "right"
examples = [make_example(r, tok) for r in pairs_use]
ds = HFDataset.from_list(examples)
targs = TrainingArguments(
output_dir=f"{out_dir}/ckpt", num_train_epochs=args.epochs,
per_device_train_batch_size=1, gradient_accumulation_steps=4,
learning_rate=1e-4, bf16=True, logging_steps=10,
save_strategy="no", report_to="none", remove_unused_columns=False, warmup_ratio=0.05,
seed=args.seed,
)
log(f"training on {len(ds)} pairs, {args.epochs} epochs")
Trainer(model=model, args=targs, train_dataset=ds, processing_class=tok).train()
log("training done")
tok.padding_side = "left"
# Eval trained
model.eval()
log("eval TRAINED on full HumanEval")
tr_corr, tr_total = humaneval_full(model, tok)
log(f" TRAINED: {tr_corr}/{tr_total}")
result = {
"n_pairs_used": len(pairs_use), "epochs": args.epochs, "seed": args.seed,
"base": [base_corr, base_total], "trained": [tr_corr, tr_total],
"delta": tr_corr - base_corr,
"elapsed_s": time.time() - T0,
}
with open(f"{out_dir}/result.json", "w") as fh:
json.dump(result, fh, indent=2)
print()
print("=" * 70)
print(f" N_PAIRS: {len(pairs_use)} EPOCHS: {args.epochs} SEED: {args.seed}")
print(f" HUMAN-EVAL FULL: base={base_corr}/{base_total} trained={tr_corr}/{tr_total} Δ={tr_corr-base_corr:+d}")
print(f" time: {time.time()-T0:.0f}s")
print("=" * 70)
if __name__ == "__main__":
main()

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"""Eval our best 14B adapter on HumanEval+ (contamination-resistant hidden tests)."""
import os, json, time, re, subprocess, tempfile, argparse
os.environ.setdefault("HF_HOME", "/workspace/hf")
os.environ["TRANSFORMERS_VERBOSITY"] = "error"
import torch
from transformers import AutoModelForCausalLM, AutoTokenizer
from datasets import load_dataset
from peft import PeftModel
T0 = time.time()
def log(m): print(f"[{time.time()-T0:7.1f}s] {m}", flush=True)
def extract_code(text):
if "```python" in text: text = text.split("```python", 1)[1]
elif "```" in text: text = text.split("```", 1)[1]
if "```" in text: text = text.split("```", 1)[0]
return text.strip()
def run_python(code, timeout=15):
with tempfile.NamedTemporaryFile("w", suffix=".py", delete=False) as f:
f.write(code); path = f.name
try:
r = subprocess.run(["python3", path], capture_output=True, timeout=timeout, text=True, cwd="/tmp")
return r.returncode == 0
except subprocess.TimeoutExpired: return False
finally:
try: os.unlink(path)
except: pass
def gen_batch(model, tok, prompts, max_new=400, batch=4):
outs = []
for i in range(0, len(prompts), batch):
chunk = prompts[i:i+batch]
texts = []
for p in chunk:
msgs = [{"role": "system", "content": "You are a Python coder. Output one ```python block only."},
{"role": "user", "content": p}]
texts.append(tok.apply_chat_template(msgs, tokenize=False, add_generation_prompt=True))
inp = tok(texts, return_tensors="pt", padding=True, truncation=True, max_length=1500).to(model.device)
with torch.no_grad():
out = model.generate(**inp, max_new_tokens=max_new, do_sample=False, pad_token_id=tok.eos_token_id)
for j in range(out.size(0)):
outs.append(tok.decode(out[j][inp.input_ids.shape[1]:], skip_special_tokens=True))
return outs
def main():
ap = argparse.ArgumentParser()
ap.add_argument("--model", default="Qwen/Qwen2.5-14B")
ap.add_argument("--adapter", default="/workspace/multi_pair/multi_v1/adapter")
ap.add_argument("--tag", required=True)
args = ap.parse_args()
out_dir = f"/workspace/eval_plus/{args.tag}"
os.makedirs(out_dir, exist_ok=True)
log(f"loading {args.model}")
tok = AutoTokenizer.from_pretrained(args.model)
if tok.pad_token is None: tok.pad_token = tok.eos_token
tok.padding_side = "left"
model = AutoModelForCausalLM.from_pretrained(args.model, torch_dtype=torch.bfloat16, device_map="cuda:0")
if args.adapter and os.path.exists(args.adapter):
log(f" loading adapter from {args.adapter}")
model = PeftModel.from_pretrained(model, args.adapter)
else:
log(" no adapter — base only")
model.eval()
# Load HumanEval+ via evalplus dataset
log("loading HumanEvalPlus dataset")
ds = list(load_dataset("evalplus/humanevalplus", split="test"))
log(f" {len(ds)} problems")
# Eval
log("eval...")
prompts = [p["prompt"] + "\n# Complete the function above." for p in ds]
outs = gen_batch(model, tok, prompts, max_new=400, batch=4)
base_pass, plus_pass = 0, 0
for i, (p, raw) in enumerate(zip(ds, outs)):
code = extract_code(raw) if "```" in raw else raw
full = p["prompt"] + "\n" + code if "def " not in code else code
# Public tests
base_test = full + "\n\n" + p["test"] + f"\n\ncheck({p['entry_point']})"
b = run_python(base_test, timeout=15)
# Plus tests (hidden harder)
plus_check = p.get("plus_input", None)
if plus_check is not None and "plus_test" in p:
plus_test = full + "\n\n" + p["plus_test"] + f"\n\ncheck({p['entry_point']})"
pp = run_python(plus_test, timeout=15)
else:
pp = b # fallback
if b: base_pass += 1
if pp: plus_pass += 1
if (i+1) % 20 == 0:
log(f" {i+1}/{len(ds)}: base={base_pass}, plus={plus_pass}")
result = {"model": args.model, "adapter": args.adapter,
"base_pass": base_pass, "plus_pass": plus_pass, "n": len(ds),
"elapsed_s": time.time() - T0}
with open(f"{out_dir}/result.json", "w") as fh: json.dump(result, fh, indent=2)
print()
print("=" * 70)
print(f" HumanEval+ public: {base_pass}/{len(ds)} plus(hidden): {plus_pass}/{len(ds)}")
print(f" Time: {time.time()-T0:.0f}s")
print("=" * 70)
if __name__ == "__main__":
main()

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"""vLLM dual eval using RAW completion format (no chat template) for base models.
Recipe for non-instruct base models uses simple completion-style prompting
that matches how base models were pretrained.
"""
import os, json, time, re, subprocess, tempfile, argparse, gc
os.environ.setdefault("HF_HOME", "/workspace/hf")
os.environ.setdefault("HF_HUB_ENABLE_HF_TRANSFER", "1")
os.environ["TRANSFORMERS_VERBOSITY"] = "error"
import torch
from datasets import load_dataset
T0 = time.time()
def log(m): print(f"[{time.time()-T0:7.1f}s] {m}", flush=True)
def extract_code(text):
if "```python" in text: text = text.split("```python", 1)[1]
elif "```" in text: text = text.split("```", 1)[1]
if "```" in text: text = text.split("```", 1)[0]
return text.strip()
def run_python(code, timeout=10):
with tempfile.NamedTemporaryFile("w", suffix=".py", delete=False) as f:
f.write(code); path = f.name
try:
r = subprocess.run(["python3", path], capture_output=True, timeout=timeout, text=True, cwd="/tmp")
return r.returncode == 0
except subprocess.TimeoutExpired: return False
finally:
try: os.unlink(path)
except: pass
def make_he_prompt(p):
"""Raw completion: just the docstring + 'def'."""
return p["prompt"]
def make_mbpp_prompt(p):
"""Raw completion: docstring + tests + 'def'."""
return (f"# Task: {p['prompt']}\n"
f"# Tests:\n# " + "\n# ".join(p["test_list"]) + "\n\n")
def vllm_generate(llm, prompts, max_new=400, temperature=0.0, stops=None):
from vllm import SamplingParams
sp = SamplingParams(
temperature=temperature, top_p=0.95 if temperature > 0 else 1.0,
max_tokens=max_new, stop=stops or ["\nclass ", "\nif __name__", "\nprint(", "\n#"],
)
out = llm.generate(prompts, sp, use_tqdm=False)
return [o.outputs[0].text for o in out]
def vllm_generate_lora(llm, prompts, lora_req, max_new=400, temperature=0.0, stops=None):
from vllm import SamplingParams
sp = SamplingParams(
temperature=temperature, top_p=0.95 if temperature > 0 else 1.0,
max_tokens=max_new, stop=stops or ["\nclass ", "\nif __name__", "\nprint(", "\n#"],
)
out = llm.generate(prompts, sp, lora_request=lora_req, use_tqdm=False)
return [o.outputs[0].text for o in out]
def eval_humaneval(outs_func, label):
he = list(load_dataset("openai_humaneval", split="test"))
log(f" HumanEval [{label}] ({len(he)})")
prompts = [make_he_prompt(p) for p in he]
t0 = time.time()
outs = outs_func(prompts, max_new=400)
log(f" gen done in {time.time()-t0:.1f}s")
correct = 0
for p, raw in zip(he, outs):
# construct full function: prompt + raw completion
full = p["prompt"] + raw
test_code = full + "\n\n" + p["test"] + f"\n\ncheck({p['entry_point']})"
if run_python(test_code, timeout=10): correct += 1
return correct, len(he)
def eval_mbpp(outs_func, label, n=200):
mbpp = list(load_dataset("mbpp", "sanitized", split="test"))[:n]
log(f" MBPP [{label}] ({len(mbpp)})")
prompts = [make_mbpp_prompt(p) for p in mbpp]
t0 = time.time()
outs = outs_func(prompts, max_new=400)
log(f" gen done in {time.time()-t0:.1f}s")
correct = 0
for p, raw in zip(mbpp, outs):
# raw is the function code
code = raw
if "```" in code:
code = extract_code("```python" + code if "```python" not in code else code)
test_code = code + "\n\n" + "\n".join(p["test_list"])
if run_python(test_code, timeout=10): correct += 1
return correct, len(mbpp)
def make_train_example(r, tok):
"""Raw-completion training format."""
sig = r.get("signature", "")
broken = r.get("broken", "")
fixed = r.get("fixed", "")
tests = r.get("tests", [])
err = r.get("error", "")
user = (f"# Task: implement {sig}\n"
f"# Tests:\n# " + "\n# ".join(tests) + "\n"
f"# My broken attempt:\n{broken}\n"
f"# Error: {err}\n"
f"# Corrected:\n")
target = fixed
full = user + target
full_ids = tok(full, add_special_tokens=False)["input_ids"]
user_ids = tok(user, add_special_tokens=False)["input_ids"]
MAX = 1024
full_ids = full_ids[:MAX]
labels = list(full_ids)
n_user = min(len(user_ids), len(labels))
for i in range(n_user): labels[i] = -100
pad = MAX - len(full_ids)
return {"input_ids": full_ids + [tok.pad_token_id]*pad,
"attention_mask": [1]*len(full_ids) + [0]*pad,
"labels": labels + [-100]*pad}
def main():
ap = argparse.ArgumentParser()
ap.add_argument("--model", required=True)
ap.add_argument("--pairs", default="/workspace/saved_pairs/pairs_40.jsonl")
ap.add_argument("--n_pairs", type=int, default=40)
ap.add_argument("--mbpp_n", type=int, default=200)
ap.add_argument("--tag", required=True)
ap.add_argument("--skip_train", action="store_true")
args = ap.parse_args()
out_dir = f"/workspace/dual_eval_raw/{args.tag}"
os.makedirs(out_dir, exist_ok=True)
from vllm import LLM
from transformers import AutoTokenizer
log(f"loading {args.model} into vLLM")
tok = AutoTokenizer.from_pretrained(args.model)
if tok.pad_token is None: tok.pad_token = tok.eos_token
llm = LLM(model=args.model, dtype="bfloat16", gpu_memory_utilization=0.85, max_model_len=2048)
log(f" loaded")
log("=== BASE evals ===")
base_he, _ = eval_humaneval(lambda P, max_new=400: vllm_generate(llm, P, max_new=max_new), "BASE")
base_mbpp, _ = eval_mbpp(lambda P, max_new=400: vllm_generate(llm, P, max_new=max_new), "BASE", n=args.mbpp_n)
log(f" BASE: HumanEval={base_he}/164 MBPP={base_mbpp}/{args.mbpp_n}")
if args.skip_train:
result = {"model": args.model, "base_humaneval": base_he, "base_mbpp": base_mbpp, "n_he": 164, "n_mbpp": args.mbpp_n, "elapsed_s": time.time()-T0}
with open(f"{out_dir}/result.json", "w") as fh: json.dump(result, fh, indent=2)
return
# Tear down vLLM, train LoRA
log("=== TRAINING ===")
del llm; gc.collect(); torch.cuda.empty_cache()
from transformers import AutoModelForCausalLM, TrainingArguments, Trainer
from datasets import Dataset as HFDataset
from peft import LoraConfig, get_peft_model
pairs = [json.loads(l) for l in open(args.pairs)][:args.n_pairs]
model = AutoModelForCausalLM.from_pretrained(args.model, torch_dtype=torch.bfloat16, device_map="cuda:0")
lora_cfg = LoraConfig(r=16, lora_alpha=32, lora_dropout=0.05, bias="none",
target_modules=["q_proj", "k_proj", "v_proj", "o_proj"], task_type="CAUSAL_LM")
model = get_peft_model(model, lora_cfg)
ds = HFDataset.from_list([make_train_example(r, tok) for r in pairs])
targs = TrainingArguments(
output_dir=f"{out_dir}/ckpt", num_train_epochs=2,
per_device_train_batch_size=1, gradient_accumulation_steps=4,
learning_rate=1e-4, bf16=True, logging_steps=10,
save_strategy="no", report_to="none", remove_unused_columns=False, warmup_ratio=0.05,
)
Trainer(model=model, args=targs, train_dataset=ds, tokenizer=tok).train()
log("training done")
adapter_dir = f"{out_dir}/adapter"
model.save_pretrained(adapter_dir)
del model; gc.collect(); torch.cuda.empty_cache()
from vllm import LLM
from vllm.lora.request import LoRARequest
llm = LLM(model=args.model, dtype="bfloat16", gpu_memory_utilization=0.85, max_model_len=2048,
enable_lora=True, max_lora_rank=16)
lora_req = LoRARequest("tf_adapter", 1, adapter_dir)
log("=== TRAINED evals (vLLM + LoRA) ===")
tr_he, _ = eval_humaneval(lambda P, max_new=400: vllm_generate_lora(llm, P, lora_req, max_new=max_new), "TRAINED")
tr_mbpp, _ = eval_mbpp(lambda P, max_new=400: vllm_generate_lora(llm, P, lora_req, max_new=max_new), "TRAINED", n=args.mbpp_n)
result = {
"model": args.model, "n_pairs": len(pairs),
"humaneval": {"base": base_he, "trained": tr_he, "delta": tr_he-base_he, "n": 164},
"mbpp": {"base": base_mbpp, "trained": tr_mbpp, "delta": tr_mbpp-base_mbpp, "n": args.mbpp_n},
"elapsed_s": time.time() - T0,
}
with open(f"{out_dir}/result.json", "w") as fh: json.dump(result, fh, indent=2)
print()
print("=" * 70)
print(f" {args.model} — RAW completion format")
print(f" HumanEval: base={base_he}/164 trained={tr_he}/164 Δ={tr_he-base_he:+d}")
print(f" MBPP: base={base_mbpp}/{args.mbpp_n} trained={tr_mbpp}/{args.mbpp_n} Δ={tr_mbpp-base_mbpp:+d}")
print(f" Time: {time.time()-T0:.0f}s")
print("=" * 70)
if __name__ == "__main__":
main()