#!/usr/bin/env python3 """Build base.db from downloaded parquet files. Reads train.parquet, test.parquet, neighbors.parquet and creates a SQLite database with tables: train, query_vectors, neighbors. Usage: uv run --with pandas --with pyarrow python build_base_db.py """ import json import os import sqlite3 import struct import sys import time import pandas as pd def float_list_to_blob(floats): """Pack a list of floats into a little-endian f32 blob.""" return struct.pack(f"<{len(floats)}f", *floats) def main(): seed_dir = os.path.dirname(os.path.abspath(__file__)) db_path = os.path.join(seed_dir, "base.db") train_path = os.path.join(seed_dir, "train.parquet") test_path = os.path.join(seed_dir, "test.parquet") neighbors_path = os.path.join(seed_dir, "neighbors.parquet") for p in (train_path, test_path, neighbors_path): if not os.path.exists(p): print(f"ERROR: {p} not found. Run 'make download' first.") sys.exit(1) if os.path.exists(db_path): os.remove(db_path) conn = sqlite3.connect(db_path) conn.execute("PRAGMA journal_mode=WAL") conn.execute("PRAGMA page_size=4096") # --- query_vectors (from test.parquet) --- print("Loading test.parquet (query vectors)...") t0 = time.perf_counter() df_test = pd.read_parquet(test_path) conn.execute( "CREATE TABLE query_vectors (id INTEGER PRIMARY KEY, vector BLOB)" ) rows = [] for _, row in df_test.iterrows(): rows.append((int(row["id"]), float_list_to_blob(row["emb"]))) conn.executemany("INSERT INTO query_vectors (id, vector) VALUES (?, ?)", rows) conn.commit() print(f" {len(rows)} query vectors in {time.perf_counter() - t0:.1f}s") # --- neighbors (from neighbors.parquet) --- print("Loading neighbors.parquet...") t0 = time.perf_counter() df_neighbors = pd.read_parquet(neighbors_path) conn.execute( "CREATE TABLE neighbors (" " query_vector_id INTEGER, rank INTEGER, neighbors_id TEXT," " UNIQUE(query_vector_id, rank))" ) rows = [] for _, row in df_neighbors.iterrows(): qid = int(row["id"]) # neighbors_id may be a numpy array or JSON string nids = row["neighbors_id"] if isinstance(nids, str): nids = json.loads(nids) for rank, nid in enumerate(nids): rows.append((qid, rank, str(int(nid)))) conn.executemany( "INSERT INTO neighbors (query_vector_id, rank, neighbors_id) VALUES (?, ?, ?)", rows, ) conn.commit() print(f" {len(rows)} neighbor rows in {time.perf_counter() - t0:.1f}s") # --- train (from train.parquet) --- print("Loading train.parquet (1M vectors, this takes a few minutes)...") t0 = time.perf_counter() conn.execute( "CREATE TABLE train (id INTEGER PRIMARY KEY, vector BLOB)" ) batch_size = 10000 df_iter = pd.read_parquet(train_path) total = len(df_iter) for start in range(0, total, batch_size): chunk = df_iter.iloc[start : start + batch_size] rows = [] for _, row in chunk.iterrows(): rows.append((int(row["id"]), float_list_to_blob(row["emb"]))) conn.executemany("INSERT INTO train (id, vector) VALUES (?, ?)", rows) conn.commit() done = min(start + batch_size, total) elapsed = time.perf_counter() - t0 rate = done / elapsed if elapsed > 0 else 0 eta = (total - done) / rate if rate > 0 else 0 print( f" {done:>8}/{total} {elapsed:.0f}s {rate:.0f} rows/s eta {eta:.0f}s", flush=True, ) elapsed = time.perf_counter() - t0 print(f" {total} train vectors in {elapsed:.1f}s") conn.close() size_mb = os.path.getsize(db_path) / (1024 * 1024) print(f"\nDone: {db_path} ({size_mb:.0f} MB)") if __name__ == "__main__": main()