sqlite-vec/tests/test-optimize.py

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import sqlite3
import struct
import pytest
from helpers import _f32, _i64, _int8, exec
def test_optimize_basic(db):
"""Insert 16 rows (2 chunks of 8), delete 6 from chunk 1, optimize → 1 chunk."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
for i in range(1, 17):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 2
# Delete 6 from chunk 1 (rows 1-6), leaving 2 live in chunk 1
for i in range(1, 7):
db.execute("delete from v where rowid = ?", [i])
# 10 live rows: 2 in chunk 1, 8 in chunk 2
assert db.execute("select count(*) from v").fetchone()[0] == 10
db.execute("insert into v(v) values ('optimize')")
# After optimize: 10 entries should fit in 2 chunks (8+2)
# but the 8 from chunk 2 can't all be moved into 6 free slots of chunk 1,
# so we should still have at least 2 chunks.
# Actually: left=chunk1(6 free), right=chunk2(8 live)
# Move 6 entries from chunk2 → chunk1, chunk2 still has 2 live → 2 chunks remain
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 2
# All 10 rows still queryable
rows = db.execute("select rowid from v order by rowid").fetchall()
assert [r[0] for r in rows] == list(range(7, 17))
for i in range(7, 17):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
def test_optimize_full_compaction(db):
"""Insert 24 rows (3 chunks of 8), delete all but 4, optimize → 1 chunk."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
for i in range(1, 25):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 3
# Keep rows 1,2,3,4 in chunk 1, delete everything else
for i in range(5, 25):
db.execute("delete from v where rowid = ?", [i])
assert db.execute("select count(*) from v").fetchone()[0] == 4
db.execute("insert into v(v) values ('optimize')")
# Only 1 chunk should remain
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 1
assert db.execute("select count(*) from v_vector_chunks00").fetchone()[0] == 1
# All 4 rows still queryable
for i in range(1, 5):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
def test_optimize_noop_clean_table(db):
"""Insert exactly 8 rows (1 full chunk), optimize is a no-op."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
for i in range(1, 9):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
db.execute("insert into v(v) values ('optimize')")
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 1
for i in range(1, 9):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
def test_optimize_empty_table(db):
"""Optimize on empty table is a no-op."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
db.execute("insert into v(v) values ('optimize')")
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 0
def test_optimize_knn_still_works(db):
"""After optimize, KNN queries return correct results."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
for i in range(1, 17):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
# Delete first 6 rows
for i in range(1, 7):
db.execute("delete from v where rowid = ?", [i])
db.execute("insert into v(v) values ('optimize')")
# KNN query for vector closest to [7,7,7,7]
knn = db.execute(
"select rowid, distance from v where emb match ? and k = 1",
[_f32([7.0, 7.0, 7.0, 7.0])],
).fetchall()
assert len(knn) == 1
assert knn[0][0] == 7
def test_optimize_fullscan_still_works(db):
"""After optimize, SELECT * returns all rows."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
for i in range(1, 17):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
for i in range(1, 7):
db.execute("delete from v where rowid = ?", [i])
db.execute("insert into v(v) values ('optimize')")
rows = db.execute("select rowid, emb from v order by rowid").fetchall()
assert len(rows) == 10
for row in rows:
assert row[1] == _f32([float(row[0])] * 4)
def test_optimize_partitioned(db):
"""Two partitions each fragmented → optimized independently."""
db.execute(
"create virtual table v using vec0("
"part text partition key, emb float[4], chunk_size=8"
")"
)
# Partition A: 16 rows (2 chunks)
for i in range(1, 17):
db.execute(
"insert into v(rowid, part, emb) values (?, 'A', ?)",
[i, _f32([float(i)] * 4)],
)
# Partition B: 16 rows (2 chunks)
for i in range(17, 33):
db.execute(
"insert into v(rowid, part, emb) values (?, 'B', ?)",
[i, _f32([float(i)] * 4)],
)
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 4
# Delete 7 from each partition's first chunk
for i in range(1, 8):
db.execute("delete from v where rowid = ?", [i])
for i in range(17, 24):
db.execute("delete from v where rowid = ?", [i])
db.execute("insert into v(v) values ('optimize')")
# Each partition had 9 live entries: fits in 2 chunks each → 4 total
# (7 free in chunk1 + 8 live in chunk2 → move 7 → chunk2 has 1 live → still 2 chunks)
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 4
# All remaining rows still accessible
for i in range(8, 17):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
for i in range(24, 33):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
def test_optimize_with_metadata(db):
"""Optimize with integer, float, boolean, and short text metadata."""
db.execute(
"create virtual table v using vec0("
"emb float[4], "
"m_bool boolean, "
"m_int integer, "
"m_float float, "
"m_text text, "
"chunk_size=8"
")"
)
for i in range(1, 17):
db.execute(
"insert into v(rowid, emb, m_bool, m_int, m_float, m_text) "
"values (?, ?, ?, ?, ?, ?)",
[i, _f32([float(i)] * 4), i % 2 == 0, i * 10, float(i) / 2.0, f"t{i}"],
)
for i in range(1, 7):
db.execute("delete from v where rowid = ?", [i])
db.execute("insert into v(v) values ('optimize')")
# Verify metadata preserved
for i in range(7, 17):
row = db.execute(
"select m_bool, m_int, m_float, m_text from v where rowid = ?", [i]
).fetchone()
assert row[0] == (1 if i % 2 == 0 else 0), f"bool mismatch at rowid {i}"
assert row[1] == i * 10, f"int mismatch at rowid {i}"
assert abs(row[2] - float(i) / 2.0) < 1e-6, f"float mismatch at rowid {i}"
assert row[3] == f"t{i}", f"text mismatch at rowid {i}"
def test_optimize_with_auxiliary(db):
"""Aux data still accessible after optimize (keyed by rowid, no move needed)."""
db.execute(
"create virtual table v using vec0("
"emb float[4], +aux_text text, chunk_size=8"
")"
)
for i in range(1, 17):
db.execute(
"insert into v(rowid, emb, aux_text) values (?, ?, ?)",
[i, _f32([float(i)] * 4), f"aux_{i}"],
)
for i in range(1, 7):
db.execute("delete from v where rowid = ?", [i])
db.execute("insert into v(v) values ('optimize')")
for i in range(7, 17):
row = db.execute(
"select aux_text from v where rowid = ?", [i]
).fetchone()
assert row[0] == f"aux_{i}"
def test_optimize_text_pk(db):
"""Rowids correctly updated, text PKs still work after optimize."""
db.execute(
"create virtual table v using vec0("
"id text primary key, emb float[4], chunk_size=8"
")"
)
for i in range(1, 17):
db.execute(
"insert into v(id, emb) values (?, ?)",
[f"doc_{i}", _f32([float(i)] * 4)],
)
for i in range(1, 7):
db.execute("delete from v where id = ?", [f"doc_{i}"])
db.execute("insert into v(v) values ('optimize')")
for i in range(7, 17):
row = db.execute(
"select emb from v where id = ?", [f"doc_{i}"]
).fetchone()
assert row[0] == _f32([float(i)] * 4)
def _file_db(tmp_path):
"""Open a file-backed DB (required for page_count to shrink after VACUUM)."""
db = sqlite3.connect(str(tmp_path / "test.db"))
db.row_factory = sqlite3.Row
db.enable_load_extension(True)
db.load_extension("dist/vec0")
db.enable_load_extension(False)
return db
def test_optimize_disk_space_reclaimed(tmp_path):
"""PRAGMA page_count decreases after optimize + VACUUM."""
dims = 256
db = _file_db(tmp_path)
db.execute(f"create virtual table v using vec0(emb float[{dims}], chunk_size=8)")
for i in range(1, 25): # 3 full chunks of 8
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * dims)],
)
db.commit()
pages_before = db.execute("pragma page_count").fetchone()[0]
# Delete 20 of 24 rows (leaving 4 live)
for i in range(5, 25):
db.execute("delete from v where rowid = ?", [i])
db.execute("insert into v(v) values ('optimize')")
db.commit()
db.execute("vacuum")
pages_after = db.execute("pragma page_count").fetchone()[0]
assert pages_after < pages_before, (
f"page_count should shrink after optimize+vacuum: "
f"{pages_before} -> {pages_after}"
)
# Remaining rows still work
for i in range(1, 5):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * dims)
db.close()
def test_optimize_unknown_command(db):
"""Unknown command gives SQLITE_ERROR with message."""
result = exec(db, "insert into v(v) values ('bogus')")
# We need a table first
db.execute("create virtual table v2 using vec0(emb float[4], chunk_size=8)")
result = exec(db, "insert into v2(v2) values ('bogus')")
assert "error" in result
assert "Unknown" in result["message"] or "unknown" in result["message"]
def test_optimize_insert_after(db):
"""Inserting new rows after optimize still works correctly."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
for i in range(1, 17):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
for i in range(1, 7):
db.execute("delete from v where rowid = ?", [i])
db.execute("insert into v(v) values ('optimize')")
# Insert new rows after optimize
for i in range(100, 108):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
# Both old and new rows queryable
for i in range(7, 17):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
for i in range(100, 108):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
def test_optimize_multiple_moves_from_same_chunk(db):
"""Ensure multiple live entries in the same source chunk are all moved."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
# 24 rows = 3 chunks of 8
for i in range(1, 25):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
# Delete all of chunk 1 (1-8) — leaves 8 free slots
for i in range(1, 9):
db.execute("delete from v where rowid = ?", [i])
# Delete half of chunk 2 (9-12) — leaves 4 live in chunk 2, 8 live in chunk 3
for i in range(9, 13):
db.execute("delete from v where rowid = ?", [i])
# 12 live rows total: 4 in chunk 2 (offsets 4-7), 8 in chunk 3 (offsets 0-7)
assert db.execute("select count(*) from v").fetchone()[0] == 12
db.execute("insert into v(v) values ('optimize')")
# After optimize: all 12 should fit in 2 chunks, chunk 3 should be emptied
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 2
# All remaining rows still queryable with correct vectors
for i in range(13, 25):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
def test_optimize_scattered_deletes(db):
"""Delete every other row to create scattered free slots across chunks."""
db.execute("create virtual table v using vec0(emb float[4], chunk_size=8)")
for i in range(1, 25):
db.execute(
"insert into v(rowid, emb) values (?, ?)",
[i, _f32([float(i)] * 4)],
)
# Delete even rows: 2,4,6,8,10,12,14,16,18,20,22,24
for i in range(2, 25, 2):
db.execute("delete from v where rowid = ?", [i])
# 12 live rows scattered across 3 chunks
assert db.execute("select count(*) from v").fetchone()[0] == 12
db.execute("insert into v(v) values ('optimize')")
# After optimize: 12 rows should fit in 2 chunks
assert db.execute("select count(*) from v_chunks").fetchone()[0] == 2
# All remaining odd rows still queryable
for i in range(1, 25, 2):
row = db.execute("select emb from v where rowid = ?", [i]).fetchone()
assert row[0] == _f32([float(i)] * 4)
def test_optimize_with_long_text_metadata(db):
"""Long text metadata (overflow) preserved after optimize."""
db.execute(
"create virtual table v using vec0("
"emb float[4], m_text text, chunk_size=8"
")"
)
long_text = "x" * 100 # >12 chars, stored in overflow table
for i in range(1, 17):
db.execute(
"insert into v(rowid, emb, m_text) values (?, ?, ?)",
[i, _f32([float(i)] * 4), f"{long_text}_{i}"],
)
for i in range(1, 7):
db.execute("delete from v where rowid = ?", [i])
db.execute("insert into v(v) values ('optimize')")
for i in range(7, 17):
row = db.execute(
"select m_text from v where rowid = ?", [i]
).fetchone()
assert row[0] == f"{long_text}_{i}"