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Andrew Altshuler e98347eb7b
schema-lint chassis v1.0: DropProperty Soft + code-tagged diagnostics (MR-694) (#90)
* schema-lint chassis v1 (WIP): tier surfacing + plan doc

First commit of the chassis v1 branch. Lands a small, foundational
slice without behavior change, plus a planning doc that lays out the
remaining 7 commits in sequence so the PR can be reviewed
incrementally.

This commit:

- Adds SchemaMigrationStep::diagnostic() returning the full
  &'static DiagnosticCode (family + tier + severity) for
  UnsupportedChange steps with codes. Renderers can now reach the
  tier without re-implementing the code → tier lookup.

- CLI `omnigraph schema plan` output now displays tier alongside
  code:

    unsupported change on node:Person.age [OG-DS-104, destructive]:
        removing property 'Person.age' is not supported in schema
        migration v1

  Operators see at-a-glance the kind of risk each rejection
  represents — not just the rule identifier.

- No behavior change. All 11 existing schema_apply tests still pass.

Planning doc at docs/schema-lint-v1-plan.md tracks the 7 remaining
commits to bring v1 to feature-complete:

  1. (this commit) Tier surfacing in plan output.
  2. Soft / Hard mode enum on drop steps.
  3. Tombstone fields on catalog IR.
  4. Planner emits DropProperty { Soft } by default.
  5. Apply path implements Soft mode.
  6. Convert PR #62 destructive-rejection tests.
  7. --allow-data-loss flag + Hard mode.
  8. (optional) Tombstone unhide / restore command.

Delete the planning doc when v1 lands. Intentionally checked in to
the WIP branch so the scope is reviewable; not intended as a
permanent doc.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* schema-lint v1 commit 2: DropMode + dormant Drop* variants

Second commit of the chassis v1 branch. Lands the type-level shape
of soft/hard drops without wiring them up. Variants are reachable
from emitters but the planner doesn't produce them yet; the apply
path returns an explicit not-yet-implemented error if one shows up
via deserialization.

Added:

- `DropMode { Soft, Hard }` — orthogonal to `SafetyTier`. Tier
  classifies the rule's risk class; mode is the operator's intent
  for data treatment.
    - `Soft` → catalog tombstone, data retained. Tier: safe.
    - `Hard` → Lance-level removal. Tier: destructive; will require
      --allow-data-loss to apply (commit 7).

- `SchemaMigrationStep::DropType { type_kind, name, mode }` and
  `SchemaMigrationStep::DropProperty { type_kind, type_name,
  property_name, mode }` variants.

- Re-export `DropMode` from `omnigraph_compiler::DropMode` so
  downstream crates don't reach into the catalog submodule.

- CLI `render_schema_plan_step` arms for both variants, surfacing
  the mode in plan output: `drop property 'Person.age' of node
  'Person' (soft mode)`.

- `apply_schema_with_lock` exhaustive match arm for the two new
  variants that returns `manifest_internal` with a clear
  not-yet-implemented message. If a SchemaIR JSON containing
  Drop{Type,Property} arrives (e.g. from a future tool or hand-
  written), the apply path fails explicitly rather than silently
  misclassifying.

- Two new in-source tests:
    - `drop_steps_round_trip_through_serde` — pins the wire shape
      for all four (variant × mode) combinations.
    - `drop_mode_serde_uses_snake_case` — pins external-tool-
      friendly serialization (`"soft"` / `"hard"`).

Build: clean, only pre-existing warnings.
Tests:
- omnigraph-compiler schema_plan: 6/6 (4 existing + 2 new).
- omnigraph-engine schema_apply: 11/11 (unchanged — planner still
  emits UnsupportedChange for removal paths).

Next commit (commit 3 per docs/schema-lint-v1-plan.md): add the
`tombstoned: bool` fields to NodeIR / EdgeIR / PropertyIR for the
catalog representation of soft-mode tombstones.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* plan doc: reframe v1 around Lance native drop_columns

After a substrate audit of the Lance data-evolution guide on
2026-05-13, the v1 plan was simplified. Two key findings:

1. Lance's `drop_columns()` is already metadata-only and reversible
   via time travel until cleanup. No need for a parallel
   `tombstoned: bool` field in our catalog IR — Lance's version
   graph IS the tombstone.

2. The full schema_apply substrate migration (add_columns,
   drop_columns, alter_columns vs. stage_overwrite across all step
   types) is consolidated in MR-948 as a sibling issue. v1 only
   uses the relevant slice (drop_columns for OG-DS-1XX).

Net plan changes:

- Commit 3 (original): tombstone fields on catalog IR → dropped.
  No catalog IR change needed. The Lance drop_columns commit IS the
  tombstone.

- Commit 5 (original): apply path writes tombstoned: true → replaced
  with: apply path calls Dataset::drop_columns([name]).

- Commit 7 Hard mode: stage_overwrite removing the column → replaced
  with: drop_columns + compact_files + cleanup_old_versions. Same
  APIs omnigraph cleanup already uses.

- Commit 8 (original): omnigraph schema unhide → dropped. Time
  travel is the undo (omnigraph snapshot --at <commit>).

Net result: 8 commits → 5 commits. ~250 LoC less surface. More
substrate-aligned.

The chassis types from commit 2 (DropMode enum, DropType /
DropProperty variants) are kept exactly as designed; only the
implementation strategy changed.

The Lance docs quote is included in the doc so future readers see
the substrate behavior cited verbatim.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* schema-lint v1 commit 3: emit + apply DropProperty { Soft }

Wire the dormant DropProperty variant end-to-end for the Soft case.
Per docs/schema-lint-v1-plan.md, commit #3 of the schema-lint chassis
v1 series (MR-694).

Planner (schema_plan.rs):
- plan_properties: emit DropProperty { type_kind, type_name,
  property_name, mode: Soft } instead of UnsupportedChange when a
  property exists in accepted but not in desired. Plan is now
  supported = true for drop-only changes.

Apply (schema_apply.rs):
- Route DropProperty { Soft } through rewritten_tables. The existing
  batch_for_schema_apply_rewrite path already iterates the *target*
  schema fields, so a property absent from desired_catalog is
  naturally projected away. The prior Lance version retains the
  dropped column for time-travel reversibility (until cleanup runs).
- DropType still errors (lands in commit #4 with different mechanics:
  __manifest entry removal instead of column projection).
- DropProperty { Hard } still errors (lands in commit #5 with
  --allow-data-loss CLI flag + immediate compact_files +
  cleanup_old_versions).

Tests:
- Planner unit test plan_emits_soft_drop_for_removed_nullable_property
  asserts the variant emission + supported = true + no UnsupportedChange.
- Integration test apply_schema_drops_a_nullable_property_softly_
  preserves_prior_version (replaces the former
  apply_schema_rejects_dropping_a_property_with_data) asserts:
  (a) plan contains DropProperty { Soft }
  (b) apply succeeds + manifest advances + row count unchanged
  (c) current dataset schema lacks the dropped column
  (d) snapshot_at_version(pre_drop) still has the dropped column
  (e) reopen consistency — drop preserved across engine restart

Recovery: rides on SidecarKind::SchemaApply per MR-847. No new
sidecar kind needed; the entire apply path is already sidecar-wrapped.

Substrate alignment: this commit uses the stage_overwrite full-rewrite
path (full_rewrite cost class) rather than Lance native drop_columns
(catalog_only cost class). MR-948 is the follow-up substrate-alignment
refactor that introduces a LanceColumnOp surface and switches the
metadata-only case onto drop_columns. Functional outcome is identical;
cost-class improvement deferred.

Test results:
- cargo test -p omnigraph-compiler --lib: 238 passed
- cargo test -p omnigraph-engine --test schema_apply: 11 passed

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs: move schema-lint-v1-plan into docs/dev/ + add to index

Post-rebase fixup for the docs split (#93). The plan doc was added
to docs/ at the top level before main reorganized to docs/{user,dev}/.
This moves it into docs/dev/ and adds an entry to docs/dev/index.md
under a new "Active Implementation Plans" section so the
check-agents-md.sh link check passes.

Per the original commit message (617a77d), the plan doc is intentionally
temporary — it will be deleted when v1 lands.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-16 16:30:03 +03:00
.cargo Raise LANCE_MEM_POOL_SIZE to 1 GB in .cargo/config.toml 2026-04-19 22:27:49 +03:00
.context Investigate Lance MergeInsertBuilder CAS granularity (MR-766 prereq) 2026-04-28 23:30:17 +00:00
.github branch-protection: allow admin bypass on main (#94) 2026-05-15 03:32:12 +03:00
crates schema-lint chassis v1.0: DropProperty Soft + code-tagged diagnostics (MR-694) (#90) 2026-05-16 16:30:03 +03:00
docker Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
docs schema-lint chassis v1.0: DropProperty Soft + code-tagged diagnostics (MR-694) (#90) 2026-05-16 16:30:03 +03:00
scripts docs: split user and developer docs (#93) 2026-05-15 03:45:22 +03:00
.dockerignore Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
.gitignore chore: gitignore the mdrip/ markdown snapshot cache 2026-05-12 17:02:14 -07:00
AGENTS.md docs: drop npx mdrip; use curl | pandoc for full-page fetches (#97) 2026-05-15 16:06:24 +03:00
Cargo.lock release: prepare omnigraph 0.4.2 2026-05-10 14:02:28 +00:00
Cargo.toml deps: add arc-swap to workspace for PR 2 catalog/schema_source wrapping 2026-05-07 15:25:22 +02:00
CLAUDE.md Add AGENTS.md as canonical agent guide; symlink CLAUDE.md to it 2026-04-28 23:10:09 +02:00
CODE_OF_CONDUCT.md Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
CONTRIBUTING.md Merge remote-tracking branch 'origin/main' into ragnorc/explore-api 2026-04-18 20:24:39 +02:00
Dockerfile Dockerfile: switch base from Docker Hub to ECR Public 2026-04-20 13:46:23 +03:00
LICENSE Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
og-cheet-sheet.md Add query lint and check commands 2026-04-13 00:37:44 +03:00
omnigraph.example.yaml example config: use graphs / cli.graph, matching the MR-603 rename 2026-04-18 23:40:35 +03:00
openapi.json release: prepare omnigraph 0.4.2 2026-05-10 14:02:28 +00:00
README.md Update README.md 2026-05-15 18:06:25 -07:00
rust-toolchain.toml Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
SECURITY.md Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00

Omnigraph

License: MIT Rust Crates.io CI

Object-storage native graph engine with git-style workflows. Designed for agents as first-class operators.

Branch, commit, and merge typed graph data like source code. Multi-modal, self-hosted, open source.

Built on Rust, Arrow, DataFusion and Lance.

Join the Omnigraph Slack community

Use Cases

  • Company brains / Second brains
  • Context graphs
  • Backbone for multi-agent research
  • Incident response graphs
  • Compliance & audit graphs
  • Enterprise knowledge systems

Capabilities

  • Typed schema, typed queries, and typed mutations
  • Native blob-as-data support (docs, images, videos, etc)
  • Schema-as-code, query validation and linting
  • Git-style graph workflows: branches, commits, merges, and transactional runs
  • Local, on-prem & cloud S3-native storage with snapshot-pinned reads
  • Graph traversal + text, fuzzy, BM25, vector, and RRF search in one runtime
  • Policy-as-code for server-side access control
  • Single CLI for multiple deployments

Quick Install

curl -fsSL https://raw.githubusercontent.com/ModernRelay/omnigraph/main/scripts/install.sh | bash

This installs omnigraph and omnigraph-server into ~/.local/bin from published release binaries.

Or install with Homebrew:

brew tap ModernRelay/tap
brew install ModernRelay/tap/omnigraph

For starter graphs and agent skills to bootstrap and operate Omnigraph, see ModernRelay/omnigraph-cookbooks.

One-Command Local RustFS Bootstrap

curl -fsSL https://raw.githubusercontent.com/ModernRelay/omnigraph/main/scripts/local-rustfs-bootstrap.sh | bash

That bootstrap:

  • starts RustFS on 127.0.0.1:9000
  • creates a bucket and S3-backed repo
  • loads the checked-in context fixture
  • launches omnigraph-server on 127.0.0.1:8080

Docker must be installed and running first.

The RustFS bootstrap prefers the rolling edge binaries and only falls back to source builds when release assets are unavailable.

If a previous run left objects under the same repo prefix but did not finish initializing the repo, rerun with RESET_REPO=1 or set PREFIX to a new value.

Common Commands

The same URI works for local paths, s3://…, or http://host:port.

omnigraph init   --schema ./schema.pg ./repo.omni
omnigraph load   --data   ./data.jsonl ./repo.omni
omnigraph read   --query  ./queries.gq --name get_person --params '{"name":"Alice"}' ./repo.omni
omnigraph change --query  ./queries.gq --name insert_person --params '{"name":"Mina"}' ./repo.omni
omnigraph branch create --from main feature-x ./repo.omni
omnigraph branch merge  feature-x --into main ./repo.omni

See docs/user/cli.md for schema apply, snapshots, ingest, runs, and policy commands.

Docs

Build And Test

cargo build --workspace
cargo check --workspace
cargo test --workspace

Notes:

  • Rust stable toolchain, edition 2024
  • CI runs cargo test --workspace --locked
  • Full CI and some local test flows require protobuf-compiler
  • S3 integration tests expect an S3-compatible endpoint such as RustFS

Workspace Crates

  • crates/omnigraph-compiler: shared schema/query parser, typechecker, catalog, and IR lowering
  • crates/omnigraph: storage/runtime, branching, merge, change detection, and query execution
  • crates/omnigraph-cli: CLI for init/load/ingest/read/change/branch/snapshot/export/policy operations
  • crates/omnigraph-server: Axum HTTP server for remote reads, changes, ingest, export, branches, commits, and runs

Contributing

Please open an issue, spec, or design discussion before sending large code changes. Design feedback and concrete problem statements are the fastest way to collaborate on the roadmap.

Community

Join the Omnigraph Slack community to ask questions, share feedback, and follow development.