Lakehouse-native graph engine with git-style workflows https://omnigraph.dev
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Ragnor Comerford e62d9166fb
fix: optimize publishes compaction; recovery roll-back converges manifest (#141)
* test(optimize): cover manifest publish + HEAD-drift reconcile

Red against the pre-fix optimize, which ran compact_files without
publishing the compacted version to __manifest:

- maintenance: optimize must publish so the manifest table_version
  tracks the compacted Lance HEAD and a later schema apply succeeds;
  and must reconcile a pre-existing manifest-behind-HEAD drift (forged
  via raw Lance compaction) so strict writes commit again.
- end_to_end + composite_flow: post-optimize query / strict update /
  reopen in the full lifecycle (the canonical flow previously omitted
  post-optimize writes as a documented "known limitation").
- failpoints: a crash between compaction and the manifest publish rolls
  forward on next open.

* fix(optimize): publish compaction to manifest and reconcile HEAD drift

optimize ran Lance compact_files without publishing the new version to
__manifest, so the manifest table_version lagged the Lance HEAD: reads
stayed pinned to the pre-compaction version, and the next schema apply or
strict update/delete failed its HEAD-vs-manifest precondition with
"stale view ... refresh and retry" (open-time recovery rollback inflated
the gap on retry).

optimize now publishes each compacted table's version under the
per-(table, main) write queue, guarded by a manifest CAS and a
SidecarKind::Optimize recovery sidecar (loose-match; roll-forward is safe
because compaction is content-preserving). When a table has nothing left
to compact but its Lance HEAD is already ahead of the manifest pin
(pre-fix drift, or a recovery restore commit), optimize reconciles the
manifest forward to HEAD (metadata-only, no sidecar). Caches and the
CSR/CSC graph index are invalidated after a publish.

Docs updated (maintenance, storage, branches-commits, writes, testing).

* test(recovery): rollback convergence + optimize-defer regressions

Red against the current code, landed before the fix:
- recovery: after the open-time sweep rolls a sidecar back, the manifest
  must track Lance HEAD (no residual drift) so a follow-up schema apply
  succeeds — the original "+1 per retry" loop. Today roll-back restores
  without publishing, so the manifest lags HEAD and the apply fails its
  HEAD-vs-manifest precondition.
- maintenance: optimize must refuse while a recovery sidecar is pending —
  operating on an unrecovered graph could publish a partial write the
  sweep would roll back.

Also removes optimize_reconciles_preexisting_manifest_head_drift: the
ad-hoc drift reconcile it covered is replaced by recovery-side convergence.

* fix(recovery): converge manifest on roll-back; optimize defers on pending recovery

Root of PR #141's review findings and the original "+1 per retry" loop:
a Lance HEAD ahead of the manifest was ambiguous (benign content-preserving
drift vs. a partial write a sidecar will roll back), and optimize's reconcile
guessed it benign. Close the class instead of guessing:

- Recovery roll-back now PUBLISHES the restored version (via a
  push_table_update_at_head helper shared with roll-forward), so the manifest
  tracks the Lance HEAD after recovery — symmetric with roll-forward. This
  fixes the +1 loop (after one roll-back the retry's HEAD-vs-manifest
  precondition passes) and removes the only remaining source of orphaned
  drift. The audit still records the logical rolled-back-to version; the
  manifest is published at the restore commit (identical content).
- optimize drops the ad-hoc drift reconcile and instead REFUSES when a
  __recovery sidecar is pending, so it only ever operates on a recovered
  graph (manifest == HEAD); its compaction publish can no longer commit a
  partial write. With the reconcile gone, the blob-skip-vs-reconcile gap is
  moot.

Updates the rollback recovery-test helper (manifest == HEAD after roll-back),
the failpoints assertions, and the user/dev docs.

* test(recovery): fix rollback assertion for manifest convergence

The roll-back-publishes change makes the manifest version advance after a
SchemaApply roll-back (to the old-schema content), so the
schema_apply_without_schema_staging_rolls_back_on_next_open assertion must
be `version > pre`, not `version == pre`. This update was dropped during
the commit churn and surfaced as a CI Test Workspace failure; the
old-schema-preserved intent stays covered by count_rows + _schema.pg + the
RolledBack convergence invariant.
2026-06-08 02:50:12 +03:00
.cargo Raise LANCE_MEM_POOL_SIZE to 1 GB in .cargo/config.toml 2026-04-19 22:27:49 +03:00
.context Investigate Lance MergeInsertBuilder CAS granularity (MR-766 prereq) 2026-04-28 23:30:17 +00:00
.github ci(codeowners): add aaltshuler to engineering role (#147) 2026-06-07 18:05:01 +03:00
crates fix: optimize publishes compaction; recovery roll-back converges manifest (#141) 2026-06-08 02:50:12 +03:00
docker feat(server): compose OMNIGRAPH_TARGET_URI with OMNIGRAPH_CONFIG in entrypoint (#129) 2026-05-30 20:17:55 +01:00
docs fix: optimize publishes compaction; recovery roll-back converges manifest (#141) 2026-06-08 02:50:12 +03:00
scripts governance: external contribution model (issues/discussions/RFCs/PRs) (#143) 2026-06-06 23:58:08 +03:00
.dockerignore Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
.gitignore release: v0.5.0 (#115) 2026-05-23 13:59:42 +01:00
AGENTS.md fix: optimize publishes compaction; recovery roll-back converges manifest (#141) 2026-06-08 02:50:12 +03:00
Cargo.lock fix(optimize): skip blob-bearing tables to avoid Lance compaction crash (#138) 2026-06-02 17:12:00 +02:00
Cargo.toml exec/query: structured Expr pushdown via Scanner::filter_expr (unblocks CompOp::Contains) (#113) 2026-05-23 12:47:33 +01:00
CLAUDE.md Add AGENTS.md as canonical agent guide; symlink CLAUDE.md to it 2026-04-28 23:10:09 +02:00
CODE_OF_CONDUCT.md Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
CONTRIBUTING.md governance: external contribution model (issues/discussions/RFCs/PRs) (#143) 2026-06-06 23:58:08 +03:00
Dockerfile Dockerfile: switch base from Docker Hub to ECR Public 2026-04-20 13:46:23 +03:00
GOVERNANCE.md governance: external contribution model (issues/discussions/RFCs/PRs) (#143) 2026-06-06 23:58:08 +03:00
LICENSE Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
og-cheet-sheet.md feat: inline query strings in CLI and HTTP server (#110) 2026-05-29 13:41:54 +02:00
omnigraph.example.yaml example config: use graphs / cli.graph, matching the MR-603 rename 2026-04-18 23:40:35 +03:00
openapi.json fix(optimize): skip blob-bearing tables to avoid Lance compaction crash (#138) 2026-06-02 17:12:00 +02:00
README.md README: link to TypeScript SDK and MCP server (#92) 2026-05-30 14:29:49 +02:00
rust-toolchain.toml Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
SECURITY.md Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00

Omnigraph

License: MIT Rust Crates.io CI

Lakehouse native graph engine built for context assembly

Omnigraph acts as operational state & coordination layer for agents

  • Git-style versioning & branching
  • Multimodal retrieval (graph+vector/fts+filters) optimized for context assembly
  • Object storage native (S3, RustFS)
  • Native blob-as-data support (docs, images, videos, etc)
  • VPC, On-prem, hybrid deployment
  • Lance format as open storage layer
AS CODE What it means
Schema AS CODE Typed .pg schemas, planned, applied, enforced
Context AS CODE Linted queries & agentic nudges, versioned and reusable
Security AS CODE Cedar policies enforced server-side on every mutation
Dashboards AS CODE Declarative views & controls over the graph (coming)

Core Use Cases

Use case What it's for
Company brain Org knowledge unified into one queryable graph
Context graph Decision traces and codified tribal knowledge
Agentic memory Durable, versioned memory for long-running agents
Dev graph Issues & dependency model for coding agents
R&D data layer Experiments & trials data written into branches
ML workflows Versioned, branchable graphs for training & eval
Karpathy's LLM wiki A living, agent-updatable knowledge base

Quick Install

curl -fsSL https://raw.githubusercontent.com/ModernRelay/omnigraph/main/scripts/install.sh | bash

This installs omnigraph and omnigraph-server into ~/.local/bin from published release binaries.

Or install with Homebrew:

brew tap ModernRelay/tap
brew install ModernRelay/tap/omnigraph

For starter graphs and agent skills to bootstrap and operate Omnigraph, see ModernRelay/omnigraph-cookbooks.

One-Command Local RustFS Bootstrap

curl -fsSL https://raw.githubusercontent.com/ModernRelay/omnigraph/main/scripts/local-rustfs-bootstrap.sh | bash

That bootstrap:

  • starts RustFS on 127.0.0.1:9000
  • creates a bucket and S3-backed graph
  • loads the checked-in context fixture
  • launches omnigraph-server on 127.0.0.1:8080

Docker must be installed and running first.

The RustFS bootstrap prefers the rolling edge binaries and only falls back to source builds when release assets are unavailable.

If a previous run left objects under the same graph prefix but did not finish initializing the graph, rerun with RESET_REPO=1 or set PREFIX to a new value.

Common Commands

The same URI works for local paths, s3://…, or http://host:port.

omnigraph init   --schema ./schema.pg ./graph.omni
omnigraph load   --data   ./data.jsonl ./graph.omni
omnigraph read   --query  ./queries.gq --name get_person --params '{"name":"Alice"}' ./graph.omni
omnigraph change --query  ./queries.gq --name insert_person --params '{"name":"Mina"}' ./graph.omni
omnigraph branch create --from main feature-x ./graph.omni
omnigraph branch merge  feature-x --into main ./graph.omni

See docs/user/cli.md for schema apply, snapshots, ingest, commits, and policy commands.

Clients

For programmatic access to a running omnigraph-server:

  • TypeScript SDK@modernrelay/omnigraph (source). Instance-per-client, typed errors, camelCase types, async-iterator streaming export.

    npm install @modernrelay/omnigraph
    
  • Model Context Protocol server@modernrelay/omnigraph-mcp (source). Bridges Omnigraph to LLM hosts (Claude Desktop, Claude Code, …) over stdio. Exposes tools and resources for schema, branches, queries, mutations, ingest, and bundles curated best-practices guidance from the cookbook.

    npm install -g @modernrelay/omnigraph-mcp
    

Both packages are versioned in lockstep with omnigraph-server on major.minor: @modernrelay/omnigraph@X.Y.* targets omnigraph-server@X.Y.*. See ModernRelay/omnigraph-ts for the monorepo.

Docs

Build And Test

cargo build --workspace
cargo check --workspace
cargo test --workspace

Notes:

  • Rust stable toolchain, edition 2024
  • CI runs cargo test --workspace --locked
  • Full CI and some local test flows require protobuf-compiler
  • S3 integration tests expect an S3-compatible endpoint such as RustFS

Workspace Crates

  • crates/omnigraph-compiler: shared schema/query parser, typechecker, catalog, and IR lowering
  • crates/omnigraph: storage/runtime, branching, merge, change detection, and query execution
  • crates/omnigraph-cli: CLI for graph lifecycle (init/load/ingest), query/mutate, branch/commit/merge, schema/lint, snapshot/export, policy, and maintenance (optimize/cleanup)
  • crates/omnigraph-server: Axum HTTP server for remote reads, changes, ingest, export, branches, and commits

Contributing

Please open an issue, spec, or design discussion before sending large code changes. Design feedback and concrete problem statements are the fastest way to collaborate on the roadmap.

Community

Join the Omnigraph Slack community to ask questions, share feedback, and follow development.