omnigraph/docs
Ragnor Comerford a61e82f47a
MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup
Refresh user-facing and agent-facing docs for the staged-write rewire
and clean up stale Run-state-machine references that survived MR-771.

MR-794-specific updates:
* docs/runs.md — remove "Known limitation: mid-query partial failure"
  section; document the in-memory accumulator + D₂ rule + the
  LoadMode::Overwrite residual.
* docs/invariants.md §VI.25 — flip from aspirational/open to
  upheld for inserts/updates. Within-query read-your-writes is now
  load-bearing for the publisher CAS contract.
* docs/architecture.md — add "Mutation atomicity — in-memory
  accumulator (MR-794)" subsection with per-op flow; refresh the
  engine + state diagrams to drop RunRegistry and add MutationStaging.
* docs/execution.md — rewrite the mutation flow sequence diagram
  for the staged-write path; updated the LoadMode table to call
  out per-mode commit semantics; rewrote load vs ingest.
* docs/query-language.md — document the D₂ parse-time rule.
* docs/errors.md — add the D₂ BadRequest rejection path.
* docs/testing.md — extend the runs.rs row to cover the new MR-794
  contract tests; add the staged_writes.rs row.
* docs/releases/v0.4.1.md (new) — release note covering the rewire,
  test additions, residuals, and files changed.
* AGENTS.md (CLAUDE.md symlink) — update the atomic-per-query
  description and the L2 capability matrix row.

Stale-reference cleanup (MR-771 leftovers):
* docs/storage.md — drop live _graph_runs.lance / _graph_run_actors.lance
  from the layout diagram and prose; mark legacy.
* docs/branches-commits.md — move __run__<id> to a legacy note;
  remove publish_run from the publish-trigger list.
* docs/audit.md — refresh _as API list (drop begin_run_as / publish_run_as);
  legacy RunRecord.actor_id moved to a historical note.
* docs/constants.md — mark run registry / branch-prefix rows as legacy.
* docs/cli.md — replace the legacy omnigraph run * quickstart block
  with omnigraph commit list/show.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-01 10:43:19 +02:00
..
releases MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
architecture.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
audit.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
branches-commits.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
changes.md Refactor AGENTS.md from encyclopedia to map; move spec into docs/ 2026-04-28 23:31:08 +02:00
ci.md Address reviewer feedback (Cursor + cubic) on PR #60 2026-04-29 00:09:06 +02:00
cli-reference.md Address reviewer feedback (Cursor + cubic) on PR #60 2026-04-29 00:09:06 +02:00
cli.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
constants.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
deployment.md Document AWS build variant and bearer-token sources 2026-04-18 04:04:45 +03:00
embeddings.md Refactor AGENTS.md from encyclopedia to map; move spec into docs/ 2026-04-28 23:31:08 +02:00
errors.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
execution.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
indexes.md Refactor AGENTS.md from encyclopedia to map; move spec into docs/ 2026-04-28 23:31:08 +02:00
install.md Remove stale Homebrew source-build note 2026-04-11 14:12:49 +03:00
invariants.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
lance.md Add docs/lance.md — task-organized index of Lance upstream docs 2026-04-28 23:48:28 +02:00
maintenance.md Add internal-schema versioning + auto-migration for __manifest 2026-04-29 11:44:14 +00:00
merge.md Refactor AGENTS.md from encyclopedia to map; move spec into docs/ 2026-04-28 23:31:08 +02:00
policy.md Refactor AGENTS.md from encyclopedia to map; move spec into docs/ 2026-04-28 23:31:08 +02:00
query-language.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
runs.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
schema-language.md Address reviewer feedback (Cursor + cubic) on PR #60 2026-04-29 00:09:06 +02:00
server.md MR-771: demote Run to direct-publish via expected_table_versions CAS 2026-04-30 08:52:50 +02:00
storage.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00
testing.md MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup 2026-05-01 10:43:19 +02:00